Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

16407135 .. 16409156

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCTCAGATCCGGTCTGGCTTCGTTAATCGTCGATGTCAATTTGCGGCGCACGTTACGTCCATCCCCAACCTTTTCTTTTCCGGCGCATCTTAGCCGTTGCATTATCACTTCCCGTTACTCCTCCCGTACATCTCTAAGGTTTCCGATTCAAATATCTCGCCACCAACACCGTCTATCCTACTTTTCTTCATCCTCTTCGTCGGAGCAAAGCAGACCAACTTCCTCTTCCCGAAACAGTTTCAGTGGTCACGGTCAGCTTGATAGTGATGATAATTCTTCACCGCCTCCGTCGCAATCATCTTCCAAAGTTCTTACATTGCCTACCGTATTAACACTTGGTCGTGTCGCCGCCGTCCCGCTTCTCGTCGCAACCTTTTACGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCATTTTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTTAGGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCTGATAAGCTTATGGTTGCAGCTACATTGATTTTACTGTGTACAAAACCTATCCAAGTTGCTGAATTAGGACCACTTCCATGGTTATTGACCGTACCTTCTATTGCAATCATTGGTAGGGAGATTACTATGTCCGCAGTAAGAGAATGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTGGGCAAGTGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGATAGCAATGTTGGATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTATCTGTTTGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACTAATGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009668 GO:0009941 GO:0009987 GO:0010027 GO:0016043 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0061024 GO:0071704 GO:0071840 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

296

Amino Acids

32.16

Weight (kDa)

10.31

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	106 - 274	5.6e-30	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AciI	CCGC	7 cut(s)	46, 284, 351, 359, 466, 648, 729
AclWI	GGATC	3 cut(s)	3, 500, 513
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	4 cut(s)	130, 556, 609, 879
AgsI	TTSAA	1 cut(s)	152
AjuI	GAANNNNNNNTTGG	2 cut(s)	211, 243
AluBI	AGCT	5 cut(s)	259, 523, 536, 685, 797
AluI	AGCT	5 cut(s)	259, 523, 536, 685, 797
AlwI	GGATC	3 cut(s)	3, 500, 513
AlwNI	CAGNNNCTG	3 cut(s)	515, 701, 806
ApeKI	GCWGC	4 cut(s)	428, 431, 533, 665
ArsI	GACNNNNNNTTYG	2 cut(s)	822, 854
AspLEI	GCGC	2 cut(s)	51, 88
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	494
BbvI	GCAGC	4 cut(s)	440, 443, 545, 652
BccI	CCATC	2 cut(s)	70, 780
BceAI	ACGGC	4 cut(s)	81, 338, 469, 836
BisI	GCNGC	6 cut(s)	47, 351, 429, 432, 534, 666
BlsI	GCNGC	6 cut(s)	48, 352, 430, 433, 535, 667
BmcAI	AGTACT	1 cut(s)	879
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	496, 507
BmsI	GCATC	2 cut(s)	97, 677
BsaJI	CCNNGG	1 cut(s)	593
BsaWI	WCCGGW	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	449, 509
Bse3DI	GCAATG	3 cut(s)	317, 423, 784
BseDI	CCNNGG	1 cut(s)	593
BseGI	GGATG	3 cut(s)	62, 191, 791
BseMI	GCAATG	3 cut(s)	317, 423, 784
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	2 cut(s)	449, 509
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	4 cut(s)	440, 443, 545, 652
BshNI	GGYRCC	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	12, 83
BslFI	GGGAC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	341
Bsp1407I	TGTACA	1 cut(s)	554
Bsp143I	GATC	2 cut(s)	8, 505
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	7 cut(s)	46, 284, 351, 359, 466, 648, 729
BspCNI	CTCAG	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	496, 507
BspPI	GGATC	3 cut(s)	3, 500, 513
BspT107I	GGYRCC	1 cut(s)	494
BsrDI	GCAATG	3 cut(s)	317, 423, 784
BsrGI	TGTACA	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	449, 509
BssECI	CCNNGG	1 cut(s)	593
BssMI	GATC	2 cut(s)	8, 505
BssT1I	CCWWGG	1 cut(s)	593
Bst4CI	ACNGT	6 cut(s)	173, 239, 254, 328, 552, 607
Bst6I	CTCTTC	2 cut(s)	202, 232
BstAUI	TGTACA	1 cut(s)	554
BstC8I	GCNNGC	4 cut(s)	466, 766, 808, 812
BstDEI	CTNAG	3 cut(s)	5, 92, 137
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	3 cut(s)	62, 191, 791
BstHHI	GCGC	2 cut(s)	51, 88
BstKTI	GATC	2 cut(s)	11, 508
BstMBI	GATC	2 cut(s)	8, 505
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 494, 774, 803
BstV1I	GCAGC	4 cut(s)	440, 443, 545, 652
BstX2I	RGATCY	2 cut(s)	8, 505
BstXI	CCANNNNNNTGG	1 cut(s)	594
BstYI	RGATCY	2 cut(s)	8, 505
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	3 cut(s)	62, 191, 791
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	4 cut(s)	466, 766, 808, 812
CaiI	CAGNNNCTG	3 cut(s)	515, 701, 806
CfoI	GCGC	2 cut(s)	51, 88
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	4 cut(s)	129, 555, 608, 878
CviAII	CATG	1 cut(s)	594
CviQI	GTAC	4 cut(s)	129, 555, 608, 878
DdeI	CTNAG	3 cut(s)	5, 92, 137
DpnI	GATC	2 cut(s)	10, 507
DpnII	GATC	2 cut(s)	8, 505
Eam1104I	CTCTTC	2 cut(s)	202, 232
EarI	CTCTTC	2 cut(s)	202, 232
Eco130I	CCWWGG	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	783
EcoT14I	CCWWGG	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	1 cut(s)	597
FaiI	YATR	8 cut(s)	527, 595, 644, 755, 819, 858, 860, 871
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	1 cut(s)	593
FauI	CCCGC	2 cut(s)	366, 473
Fnu4HI	GCNGC	6 cut(s)	47, 351, 429, 432, 534, 666
FokI	GGATG	3 cut(s)	49, 178, 798
Fsp4HI	GCNGC	6 cut(s)	47, 351, 429, 432, 534, 666
GlaI	GCGC	2 cut(s)	50, 87
GluI	GCNGC	6 cut(s)	47, 351, 429, 432, 534, 666
HapII	CCGG	2 cut(s)	12, 83
HhaI	GCGC	2 cut(s)	51, 88
Hin1II	CATG	1 cut(s)	597
Hin6I	GCGC	2 cut(s)	49, 86
HinP1I	GCGC	2 cut(s)	49, 86
HindIII	AAGCTT	2 cut(s)	521, 683
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	12, 83
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	8, 147, 205
Hpy188III	TCNNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	555
Hpy99I	CGWCG	4 cut(s)	35, 205, 295, 371
HpyAV	CCTTC	1 cut(s)	621
HpyCH4III	ACNGT	6 cut(s)	173, 239, 254, 328, 552, 607
HpyCH4IV	ACGT	3 cut(s)	53, 58, 381
HpyCH4V	TGCA	6 cut(s)	102, 428, 533, 620, 668, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 494, 774, 803
HpyF3I	CTNAG	3 cut(s)	5, 92, 137
HpySE526I	ACGT	3 cut(s)	53, 58, 381
Hsp92II	CATG	1 cut(s)	597
HspAI	GCGC	2 cut(s)	49, 86
Kzo9I	GATC	2 cut(s)	8, 505
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	8 cut(s)	2, 25, 96, 430, 522, 786, 792, 813
Lsp1109I	GCAGC	4 cut(s)	440, 443, 545, 652
LweI	GCATC	2 cut(s)	97, 677
MaeII	ACGT	3 cut(s)	53, 58, 381
MaeIII	GTNAC	3 cut(s)	54, 116, 248
MalI	GATC	2 cut(s)	10, 507
MboI	GATC	2 cut(s)	8, 505
MboII	GAAGA	6 cut(s)	180, 189, 219, 270, 294, 877
MflI	RGATCY	2 cut(s)	8, 505
MluCI	AATT	3 cut(s)	40, 274, 578
MmeI	TCCRAC	2 cut(s)	183, 763
MnlI	CCTC	7 cut(s)	133, 205, 235, 297, 468, 685, 855
MseI	TTAA	2 cut(s)	26, 332
MslI	CAYNNNNRTG	2 cut(s)	592, 737
MspI	CCGG	2 cut(s)	12, 83
MwoI	GCNNNNNNNGC	4 cut(s)	292, 494, 774, 803
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	2 cut(s)	8, 505
NlaIII	CATG	1 cut(s)	597
NlaIV	GGNNCC	2 cut(s)	496, 507
NmeAIII	GCCGAG	1 cut(s)	794
NmuCI	GTSAC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	6 cut(s)	48, 352, 430, 433, 535, 667
PspN4I	GGNNCC	2 cut(s)	496, 507
PspPI	GGNCC	1 cut(s)	584
PsrI	GAACNNNNNNTAC	2 cut(s)	391, 423
PstNI	CAGNNNCTG	3 cut(s)	515, 701, 806
PsuI	RGATCY	2 cut(s)	8, 505
RsaI	GTAC	4 cut(s)	130, 556, 609, 879
RsaNI	GTAC	4 cut(s)	129, 555, 608, 878
RseI	CAYNNNNRTG	2 cut(s)	592, 737
SaqAI	TTAA	2 cut(s)	26, 332
SatI	GCNGC	6 cut(s)	47, 351, 429, 432, 534, 666
Sau3AI	GATC	2 cut(s)	8, 505
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	879
SfaNI	GCATC	2 cut(s)	97, 677
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	2 cut(s)	592, 737
Sse9I	AATT	3 cut(s)	40, 274, 578
SsiI	CCGC	7 cut(s)	46, 284, 351, 359, 466, 648, 729
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	6 cut(s)	173, 239, 254, 328, 552, 607
TaiI	ACGT	3 cut(s)	56, 61, 384
TaqI	TCGA	1 cut(s)	33
TasI	AATT	3 cut(s)	40, 274, 578
TatI	WGTACW	2 cut(s)	554, 877
TauI	GCSGC	2 cut(s)	49, 353
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	26, 332
Tru9I	TTAA	2 cut(s)	26, 332
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	4 cut(s)	428, 431, 533, 665
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	180, 412
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	584
ZrmI	AGTACT	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.