Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

55749995 .. 55753347

Gene Structure 3353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCAGCCCTTGTGCTCAAAATGACCACAGCAACCTCTCCTATAAAACCCCACCCCCAAAATCTCCTCCTCCCCAATTGGGTCCGCCCTCGTTCTCTCTCTCGCTCCTCCTTCACAACCACCCACCACCCAACAACCCTCCAGACCCAAACCCAAAATCAGAATCGCAAATACAAGTGGTGGAGGATAGCACCACCACTACCCTCACCCTCCTCGACTCCCCTGCTTGGGCCCAGATTCCGCGGCCCATATAAATGCCTGGCCATTTATCCCTCCTCTTCATCTGCTAGCGGCGGTCGCTCCGAGAATCAAGGAGAGGGTGGTCTTATGGCCGATATGGGTTCCCAGAATCATAAAGGCCATGAGTGGTTCGACGGCAAATTGTACGCTGATAAAGACGGATTGCTTTCCCCTAATCACGATGCCCAATCAACGCCGCCTCATCAATCCCCTAAATTGCTCACCTTGCCCACCATTCTCACCCTCGGCCGCGTCGCCGCCGTCCCCGTTCTCATCAGCACTTTCTATGTGGATAGTTGGTTGGGAAAAACTGCTACAACAAGTATATTCATAGCTGCAGCGATTACCGACTGGCTTGATGGCTATCTTGCTCGCAAGATGAGGTTAGGGTCGGCTTTTGGTGCATTTCTGGATCCAGTCGCTGATAAGCTCATGGTTGCTGCTACACTGGTTTTATTGTGCTCCAGACCTCAAGATGTTGCTGCATTTGGGCAAGTGCCATGGCTGTTGGTTGTTCCTTCAATTGCCATAATAGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCCAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCACACAGATGATCGCACTAACTATCCTCTTGGCCACCCGAGATAGCAGTCTTGGAGGGCCAGAGTTTGTAGTAGCCTCTGGGGTTGTTCTGCTTTATATATCAGCAGGGCTTGCTGTATGGTCTTTAGCTGTGTATATGAGCAAGATATGGAAAGTACTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

348

Amino Acids

37.8

Weight (kDa)

9.9

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	155 - 333	8.9e-30	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	243, 492
AciI	CCGC	8 cut(s)	85, 241, 243, 291, 294, 437, 490, 498
AclWI	GGATC	2 cut(s)	647, 660
AcoI	YGGCCR	4 cut(s)	261, 330, 487, 909
AfaI	GTAC	2 cut(s)	386, 1035
AfiI	CCNNNNNNNGG	3 cut(s)	79, 227, 228
AgsI	TTSAA	1 cut(s)	762
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	4 cut(s)	575, 670, 832, 1007
AluI	AGCT	4 cut(s)	575, 670, 832, 1007
Alw21I	GWGCWC	2 cut(s)	18, 704
AlwI	GGATC	2 cut(s)	647, 660
AlwNI	CAGNNNCTG	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	915
AoxI	GGCC	8 cut(s)	230, 244, 261, 330, 358, 487, 909, 935
ApaI	GGGCCC	1 cut(s)	234
ApeKI	GCWGC	5 cut(s)	575, 578, 680, 722, 812
AspS9I	GGNCC	5 cut(s)	82, 230, 231, 245, 935
AsuHPI	GGTGA	3 cut(s)	198, 454, 472
AsuNHI	GCTAGC	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	915
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	234
BalI	TGGCCA	2 cut(s)	263, 911
BamHI	GGATCC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	18, 704
BbvCI	CCTCAGC	1 cut(s)	1040
BbvI	GCAGC	5 cut(s)	562, 590, 667, 709, 799
BccI	CCATC	1 cut(s)	593
BceAI	ACGGC	2 cut(s)	391, 485
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	260
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	576, 795
BmcAI	AGTACT	1 cut(s)	1035
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	915
BmgT120I	GGNCC	5 cut(s)	82, 230, 231, 245, 935
BmiI	GGNNCC	4 cut(s)	83, 232, 343, 654
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	412
BmtI	GCTAGC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	125, 688
Bpu10I	CCTNAGC	1 cut(s)	1040
BpuEI	CTTGAG	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	3 cut(s)	241, 484, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 227, 228
Bse1I	ACTGG	3 cut(s)	596, 656, 693
Bse8I	GATNNNNATC	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	3 cut(s)	241, 484, 740
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	3 cut(s)	79, 227, 228
BseMII	CTCAG	2 cut(s)	833, 1031
BseNI	ACTGG	3 cut(s)	596, 656, 693
BseRI	GAGGAG	5 cut(s)	56, 59, 97, 202, 265
BseSI	GKGCMC	1 cut(s)	234
BseX3I	CGGCCG	1 cut(s)	487
BseXI	GCAGC	5 cut(s)	562, 590, 667, 709, 799
Bsh1236I	CGCG	2 cut(s)	243, 492
Bsh1285I	CGRYCG	2 cut(s)	298, 490
BshFI	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
BsiEI	CGRYCG	2 cut(s)	298, 490
BsiHKAI	GWGCWC	2 cut(s)	18, 704
BsiHKCI	CYCGRG	1 cut(s)	915
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	3 cut(s)	79, 227, 228
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
BsoBI	CYCGRG	1 cut(s)	915
Bsp120I	GGGCCC	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	18, 234, 704
Bsp143I	GATC	2 cut(s)	652, 888
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	8 cut(s)	85, 241, 243, 291, 294, 437, 490, 498
BspANI	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
BspCNI	CTCAG	2 cut(s)	832, 1032
BspFNI	CGCG	2 cut(s)	243, 492
BspLI	GGNNCC	4 cut(s)	83, 232, 343, 654
BspMAI	CTGCAG	2 cut(s)	580, 799
BspOI	GCTAGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	647, 660
BsrI	ACTGG	3 cut(s)	596, 656, 693
BssECI	CCNNGG	3 cut(s)	241, 484, 740
BssMI	GATC	2 cut(s)	652, 888
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstC8I	GCNNGC	3 cut(s)	289, 613, 990
BstDEI	CTNAG	2 cut(s)	819, 1040
BstDSI	CCRYGG	2 cut(s)	241, 740
BstFNI	CGCG	2 cut(s)	243, 492
BstKTI	GATC	2 cut(s)	655, 891
BstMBI	GATC	2 cut(s)	652, 888
BstMCI	CGRYCG	2 cut(s)	298, 490
BstMWI	GCNNNNNNNGC	4 cut(s)	297, 466, 641, 989
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	2 cut(s)	576, 795
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	2 cut(s)	243, 492
BstV1I	GCAGC	5 cut(s)	562, 590, 667, 709, 799
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BstZI	CGGCCG	1 cut(s)	487
BsuRI	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
BtgI	CCRYGG	2 cut(s)	241, 740
BtsIMutI	CAGTG	1 cut(s)	686
Cac8I	GCNNGC	3 cut(s)	289, 613, 990
CaiI	CAGNNNCTG	1 cut(s)	662
Cfr13I	GGNCC	5 cut(s)	82, 230, 231, 245, 935
Cfr42I	CCGCGG	1 cut(s)	244
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	385, 1034
CviAII	CATG	4 cut(s)	362, 673, 741, 790
CviQI	GTAC	2 cut(s)	385, 1034
DdeI	CTNAG	2 cut(s)	819, 1040
DpnI	GATC	2 cut(s)	654, 890
DpnII	GATC	2 cut(s)	652, 888
EaeI	YGGCCR	4 cut(s)	261, 330, 487, 909
EagI	CGGCCG	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	487
Eco88I	CYCGRG	1 cut(s)	915
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	740
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	4 cut(s)	365, 676, 744, 793
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	4 cut(s)	361, 672, 740, 789
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	288
GsuI	CTGGAG	2 cut(s)	125, 688
HaeIII	GGCC	8 cut(s)	232, 246, 263, 332, 360, 489, 911, 937
HgaI	GACGC	1 cut(s)	481
Hin1II	CATG	4 cut(s)	365, 676, 744, 793
HindIII	AAGCTT	1 cut(s)	830
HinfI	GANTC	5 cut(s)	163, 217, 237, 307, 349
HphI	GGTGA	3 cut(s)	198, 454, 472
Hpy188I	TCNGA	3 cut(s)	162, 304, 822
Hpy188III	TCNNGA	5 cut(s)	142, 419, 650, 705, 713
Hpy99I	CGWCG	2 cut(s)	377, 497
HpyAV	CCTTC	2 cut(s)	121, 768
HpyCH4V	TGCA	4 cut(s)	578, 644, 725, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	297, 466, 641, 989
HpyF3I	CTNAG	2 cut(s)	819, 1040
Hsp92II	CATG	4 cut(s)	365, 676, 744, 793
KspI	CCGCGG	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	652, 888
LmnI	GCTCC	3 cut(s)	110, 305, 707
Lsp1109I	GCAGC	5 cut(s)	562, 590, 667, 709, 799
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	288
MalI	GATC	2 cut(s)	654, 890
MboI	GATC	2 cut(s)	652, 888
MboII	GAAGA	1 cut(s)	270
MfeI	CAATTG	2 cut(s)	76, 762
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	3 cut(s)	18, 234, 704
MlsI	TGGCCA	2 cut(s)	263, 911
MluCI	AATT	4 cut(s)	76, 380, 455, 762
MluNI	TGGCCA	2 cut(s)	263, 911
MlyI	GAGTC	1 cut(s)	211
Mox20I	TGGCCA	2 cut(s)	263, 911
MscI	TGGCCA	2 cut(s)	263, 911
MslI	CAYNNNNRTG	2 cut(s)	253, 884
Msp20I	TGGCCA	2 cut(s)	263, 911
MspA1I	CMGCKG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	2 cut(s)	76, 762
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	243, 492
MwoI	GCNNNNNNNGC	4 cut(s)	297, 466, 641, 989
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	2 cut(s)	652, 888
NheI	GCTAGC	1 cut(s)	287
NlaIII	CATG	4 cut(s)	365, 676, 744, 793
NlaIV	GGNNCC	4 cut(s)	83, 232, 343, 654
NmeAIII	GCCGAG	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	163, 237, 307, 349
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	4 cut(s)	83, 232, 343, 654
PspOMI	GGGCCC	1 cut(s)	230
PspPI	GGNCC	5 cut(s)	82, 230, 231, 245, 935
PstI	CTGCAG	2 cut(s)	580, 799
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	2 cut(s)	386, 1035
RsaNI	GTAC	2 cut(s)	385, 1034
RseI	CAYNNNNRTG	2 cut(s)	253, 884
SacII	CCGCGG	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	652, 888
Sau96I	GGNCC	5 cut(s)	82, 230, 231, 245, 935
ScaI	AGTACT	1 cut(s)	1035
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	3 cut(s)	18, 234, 704
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	2 cut(s)	576, 795
Sfr303I	CCGCGG	1 cut(s)	244
SgrBI	CCGCGG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	253, 884
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	4 cut(s)	76, 380, 455, 762
SsiI	CCGC	8 cut(s)	85, 241, 243, 291, 294, 437, 490, 498
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	740
TaqI	TCGA	2 cut(s)	215, 372
TasI	AATT	4 cut(s)	76, 380, 455, 762
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	5 cut(s)	246, 294, 439, 492, 500
TfiI	GAWTC	4 cut(s)	163, 237, 307, 349
TscAI	CASTG	1 cut(s)	693
TseI	GCWGC	5 cut(s)	575, 578, 680, 722, 812
TspDTI	ATGAA	2 cut(s)	270, 559
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.