Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Reverse (-)

12559690 .. 12562514

Gene Structure 2825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTCAGCCCTTGTGCTCAAAATGACCACAGCAACCTCTCCTATAAAACCCCACCCCCAAAATCTCCTCCTCCCCAATTGGGTCCGCCCTCGCCCTCCTTCTCGTTCTCTCTCTCCCTCCTCCTTCACAACCACCCACCACCCAACAACCCTCCAAACCCAAAACCAAAATCAGAATCTCAAATACAAGTGGTGGAGGATAACACCACCACCACCCCCGTCCTCAAGTCTCCTGCTTGGGCCCAGATTCCGCGGCCCACATAAATGCCTGGCCATTTCTCCATCTTCTTCATCTGCTAGCGGCGGTCGCTCCGAGAATCAAGGAGAGGGTTTTATGGCCGATATGGGTTCCCAGAATCATAAAGGCCATGAGTGGTTTGACAGCAAATTGTACGCTGATAAAGACGGATTGCTTTCCCCTAATCACGATGCCCAATCAACGCCGCCTCACCAATCGCCTAAATTGCTCACCTTGCCCACCATTCTCACCCTCGGCCGTGTCGCCGCCGTGCCAGTTCTCATCAGCACTTTCTATGTGGATAGTTGGTTGGGAAAAACTGCTACAACAAGTATATTCATCGCTGCAGCGATTACTGACTGGCTTGATGGCTATCTTGCTCGCAAGATGAGGTTAGGATCTGCGTTTGGTGCATTTCTGGATCCAGTCGCTGATAAGCTCATGGTTGCCGCTACACTGGTTTTATTGTGCTCCAGACCTCAAGATGTTGCTGCATTTGGGCAAGTGCCATGGCTATTGGTTGTTCCTTCAATTGCCATAATAGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCCAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCACACAGATGATTGCACTAACTATCCTCTTGGCCACCCGAGATAGCAGTCTTGGAGGGCCAGAGTTTGTCGTAGCTTCTGGGGTTGTTCTGCTTTATATATCAGCAGGGCTTGCTGTATGGTCTTTAGCTGTGTATATGAGCAAGATATGGAAGGTACTGCTGAGAACTACTTGTCAGTGCTCTGTACATGAACCCGTTGATGACCGTTATCGCACATCGGAGCAGCATTTTGCTGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

375

Amino Acids

40.87

Weight (kDa)

9.51

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	157 - 335	1.6e-29	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	252
AciI	CCGC	8 cut(s)	85, 250, 252, 300, 303, 443, 504, 687
AclWI	GGATC	3 cut(s)	643, 653, 666
AcoI	YGGCCR	4 cut(s)	270, 336, 493, 915
AfaI	GTAC	3 cut(s)	392, 1041, 1071
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	768
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	4 cut(s)	676, 838, 959, 1013
AluI	AGCT	4 cut(s)	676, 838, 959, 1013
Alw21I	GWGCWC	3 cut(s)	18, 710, 1067
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	643, 653, 666
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	921
AoxI	GGCC	8 cut(s)	239, 253, 270, 336, 364, 493, 915, 941
ApaI	GGGCCC	1 cut(s)	243
ApeKI	GCWGC	5 cut(s)	581, 584, 728, 818, 1108
AspS9I	GGNCC	5 cut(s)	82, 239, 240, 254, 941
AsuHPI	GGTGA	3 cut(s)	440, 460, 478
AsuNHI	GCTAGC	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	921
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	2 cut(s)	272, 917
BamHI	GGATCC	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	3 cut(s)	18, 710, 1067
BbvI	GCAGC	5 cut(s)	568, 596, 715, 805, 1120
BccI	CCATC	2 cut(s)	289, 599
BceAI	ACGGC	2 cut(s)	480, 491
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	582, 801
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	921
BmgT120I	GGNCC	5 cut(s)	82, 239, 240, 254, 941
BmiI	GGNNCC	4 cut(s)	83, 241, 349, 660
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	418
BmtI	GCTAGC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	694
BpuEI	CTTGAG	2 cut(s)	208, 702
BsaBI	GATNNNNATC	1 cut(s)	609
BsaJI	CCNNGG	3 cut(s)	250, 490, 746
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	4 cut(s)	512, 602, 662, 699
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	250, 490, 746
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	839, 1037
BseNI	ACTGG	4 cut(s)	512, 602, 662, 699
BseRI	GAGGAG	3 cut(s)	56, 59, 109
BseSI	GKGCMC	1 cut(s)	243
BseX3I	CGGCCG	1 cut(s)	493
BseXI	GCAGC	5 cut(s)	568, 596, 715, 805, 1120
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	2 cut(s)	307, 496
BshFI	GGCC	8 cut(s)	241, 255, 272, 338, 366, 495, 917, 943
BsiEI	CGRYCG	2 cut(s)	307, 496
BsiHKAI	GWGCWC	3 cut(s)	18, 710, 1067
BsiHKCI	CYCGRG	1 cut(s)	921
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	8 cut(s)	241, 255, 272, 338, 366, 495, 917, 943
BsoBI	CYCGRG	1 cut(s)	921
Bsp120I	GGGCCC	1 cut(s)	239
Bsp1286I	GDGCHC	4 cut(s)	18, 243, 710, 1067
Bsp1407I	TGTACA	1 cut(s)	1069
Bsp143I	GATC	2 cut(s)	635, 658
Bsp19I	CCATGG	1 cut(s)	746
BspACI	CCGC	8 cut(s)	85, 250, 252, 300, 303, 443, 504, 687
BspANI	GGCC	8 cut(s)	241, 255, 272, 338, 366, 495, 917, 943
BspCNI	CTCAG	2 cut(s)	838, 1038
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	83, 241, 349, 660
BspMAI	CTGCAG	2 cut(s)	586, 805
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	3 cut(s)	643, 653, 666
BsrGI	TGTACA	1 cut(s)	1069
BsrI	ACTGG	4 cut(s)	512, 602, 662, 699
BssECI	CCNNGG	3 cut(s)	250, 490, 746
BssMI	GATC	2 cut(s)	635, 658
BssT1I	CCWWGG	1 cut(s)	746
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	1091
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstAUI	TGTACA	1 cut(s)	1069
BstC8I	GCNNGC	3 cut(s)	298, 619, 996
BstDEI	CTNAG	2 cut(s)	825, 1046
BstDSI	CCRYGG	2 cut(s)	250, 746
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	638, 661
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	635, 658
BstMCI	CGRYCG	2 cut(s)	307, 496
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 463, 472, 647, 995
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	2 cut(s)	582, 801
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	5 cut(s)	568, 596, 715, 805, 1120
BstX2I	RGATCY	2 cut(s)	635, 658
BstYI	RGATCY	2 cut(s)	635, 658
BstZI	CGGCCG	1 cut(s)	493
BsuRI	GGCC	8 cut(s)	241, 255, 272, 338, 366, 495, 917, 943
BtgI	CCRYGG	2 cut(s)	250, 746
BtgZI	GCGATG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	692, 1067
Cac8I	GCNNGC	3 cut(s)	298, 619, 996
CaiI	CAGNNNCTG	1 cut(s)	668
Cfr13I	GGNCC	5 cut(s)	82, 239, 240, 254, 941
Cfr42I	CCGCGG	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	391, 1040, 1070
CviAII	CATG	5 cut(s)	368, 679, 747, 796, 1073
CviQI	GTAC	3 cut(s)	391, 1040, 1070
DdeI	CTNAG	2 cut(s)	825, 1046
DpnI	GATC	2 cut(s)	637, 660
DpnII	GATC	2 cut(s)	635, 658
EaeI	YGGCCR	4 cut(s)	270, 336, 493, 915
EagI	CGGCCG	1 cut(s)	493
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	746
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	921
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	746
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	746
FaeI	CATG	5 cut(s)	371, 682, 750, 799, 1076
FatI	CATG	5 cut(s)	367, 678, 746, 795, 1072
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	694
HaeIII	GGCC	8 cut(s)	241, 255, 272, 338, 366, 495, 917, 943
Hin1II	CATG	5 cut(s)	371, 682, 750, 799, 1076
HindIII	AAGCTT	1 cut(s)	836
HinfI	GANTC	4 cut(s)	175, 246, 316, 355
HphI	GGTGA	3 cut(s)	440, 460, 478
Hpy188I	TCNGA	4 cut(s)	174, 313, 828, 1105
Hpy188III	TCNNGA	4 cut(s)	425, 656, 711, 719
HpyAV	CCTTC	4 cut(s)	108, 133, 774, 1030
HpyCH4III	ACNGT	1 cut(s)	1091
HpyCH4V	TGCA	5 cut(s)	584, 650, 731, 803, 899
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 463, 472, 647, 995
HpyF3I	CTNAG	2 cut(s)	825, 1046
Hsp92II	CATG	5 cut(s)	371, 682, 750, 799, 1076
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	635, 658
LmnI	GCTCC	3 cut(s)	314, 713, 1105
Lsp1109I	GCAGC	5 cut(s)	568, 596, 715, 805, 1120
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	297
MalI	GATC	2 cut(s)	637, 660
MboI	GATC	2 cut(s)	635, 658
MboII	GAAGA	2 cut(s)	276, 279
MfeI	CAATTG	2 cut(s)	76, 768
MflI	RGATCY	2 cut(s)	635, 658
MhlI	GDGCHC	4 cut(s)	18, 243, 710, 1067
MlsI	TGGCCA	2 cut(s)	272, 917
MluCI	AATT	4 cut(s)	76, 386, 461, 768
MluNI	TGGCCA	2 cut(s)	272, 917
Mox20I	TGGCCA	2 cut(s)	272, 917
MscI	TGGCCA	2 cut(s)	272, 917
MslI	CAYNNNNRTG	2 cut(s)	262, 890
Msp20I	TGGCCA	2 cut(s)	272, 917
MspA1I	CMGCKG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	269
MunI	CAATTG	2 cut(s)	76, 768
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	5 cut(s)	306, 463, 472, 647, 995
NcoI	CCATGG	1 cut(s)	746
NdeII	GATC	2 cut(s)	635, 658
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	5 cut(s)	371, 682, 750, 799, 1076
NlaIV	GGNNCC	4 cut(s)	83, 241, 349, 660
NmeAIII	GCCGAG	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	175, 246, 316, 355
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	4 cut(s)	83, 241, 349, 660
PspOMI	GGGCCC	1 cut(s)	239
PspPI	GGNCC	5 cut(s)	82, 239, 240, 254, 941
PstI	CTGCAG	2 cut(s)	586, 805
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	2 cut(s)	635, 658
RsaI	GTAC	3 cut(s)	392, 1041, 1071
RsaNI	GTAC	3 cut(s)	391, 1040, 1070
RseI	CAYNNNNRTG	2 cut(s)	262, 890
SacII	CCGCGG	1 cut(s)	253
Sau3AI	GATC	2 cut(s)	635, 658
Sau96I	GGNCC	5 cut(s)	82, 239, 240, 254, 941
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	4 cut(s)	18, 243, 710, 1067
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	582, 801
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	262, 890
SmlI	CTYRAG	2 cut(s)	223, 717
SmoI	CTYRAG	2 cut(s)	223, 717
Sse9I	AATT	4 cut(s)	76, 386, 461, 768
SsiI	CCGC	8 cut(s)	85, 250, 252, 300, 303, 443, 504, 687
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	746
TaaI	ACNGT	1 cut(s)	1091
TasI	AATT	4 cut(s)	76, 386, 461, 768
TatI	WGTACW	1 cut(s)	1069
TauI	GCSGC	5 cut(s)	255, 303, 445, 506, 689
TfiI	GAWTC	4 cut(s)	175, 246, 316, 355
TscAI	CASTG	2 cut(s)	699, 1067
TseI	GCWGC	5 cut(s)	581, 584, 728, 818, 1108
TspDTI	ATGAA	3 cut(s)	279, 565, 1089
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	2 cut(s)	699, 1067
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.