Rh1DG319200

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009393
Physical Location & Seq
Forward (+)
54516715 .. 54519350
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG319200.1

Sequence Viewer

Length: 1053 bp
ATGTCAGCCCTTGTGCTCAAAATGACCACAGCAACCTCTCCTATAAATCCCCACCCCCAAAATCTCCTCCTCCCCAATTGGGTCCGCCCTCGCCCTCGTTCTCGTTCTCTCTCTCCCTCCTCCTTCACAACCACCCACCACCCAATAACCCTCCAAACCCAAAACCAAAATCAGAATCTCAAATACAAGTGGTGGAGGATAACACCACCACCACCCTCCTCGACTCTCCTGATTGGGCCCAGATTCCGCGGCCCATATAAATGCCTGGCCATTTCTCCATCTTCTTCATCTGCTAGCGGCGGTCGCTCCGAGAATCAAGGAGAGGGTCTTATGGCCGATATGGGTTCCCAGAATCATAAAGGCCATGAGTGGTTCGACAGCAAATTGTACGCTGATAAAGACGGATTGCTTTCCCCTAATCACGATGCCCAATCAACGCCGCCGCCTCATCAATCCCCTAAATTGCTCACCTTGCCCACCATTCTCACCCTCGGCCGCGTCGCCGCCGTGCCCCTTCTCATCACCACTTTCTATGTGGATAGTTGGTTGGGAAAAACTGCTACAACAAGTATATTCATCGCTGCAGCGATTACTGACTGGCTTGATGGCTATCTTGCTCGCAAGATGAGGTTAGGATCTGCTTTTGGTGCATTTCTGGATCCAGTCGCTGATAAGCTCATGGTTGCTGCTACACTGGTTTTATTGTGCTCCAGACCTCAAGATGTTGCTGCATTTGGGCAAGTGCCATGGCTATTGGTTGTTCCTTCAATTGCCATAATAGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCCAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCACACAGATGATCGCACTAACTATCCTCTTGGCCACCCGAGATAGCAGTCTTGGAGGGCCAGAGTTTGTAGTAGCTTCTGGGGTTGTTCTGCTTTATATATCAGCAGGGCTTGCTGTATGGTCTTTAGCTGTGTATATGAGCAAGATATGGAAAGTACTGCTGAGGTAG

Protein Analysis

350

Amino Acids

38.07

Weight (kDa)

9.89

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 157 - 335 2.4e-29 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 249, 498
AciI CCGC 9 cut(s) 85, 247, 249, 297, 300, 440, 443, 496, 504
AclWI GGATC 3 cut(s) 643, 653, 666
AcoI YGGCCR 4 cut(s) 267, 333, 493, 915
AfaI GTAC 2 cut(s) 389, 1041
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 1 cut(s) 768
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 4 cut(s) 676, 838, 959, 1013
AluI AGCT 4 cut(s) 676, 838, 959, 1013
Alw21I GWGCWC 2 cut(s) 18, 710
AlwI GGATC 3 cut(s) 643, 653, 666
AlwNI CAGNNNCTG 1 cut(s) 668
Ama87I CYCGRG 1 cut(s) 921
AoxI GGCC 8 cut(s) 236, 250, 267, 333, 361, 493, 915, 941
ApaI GGGCCC 1 cut(s) 240
ApeKI GCWGC 5 cut(s) 581, 584, 686, 728, 818
AspS9I GGNCC 5 cut(s) 82, 236, 237, 251, 941
AsuHPI GGTGA 3 cut(s) 460, 478, 514
AsuNHI GCTAGC 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 921
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 2 cut(s) 240, 513
BalI TGGCCA 2 cut(s) 269, 917
BamHI GGATCC 1 cut(s) 658
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 2 cut(s) 18, 710
BbvCI CCTCAGC 1 cut(s) 1046
BbvI GCAGC 5 cut(s) 568, 596, 673, 715, 805
BccI CCATC 2 cut(s) 286, 599
BceAI ACGGC 1 cut(s) 491
BciT130I CCWGG 1 cut(s) 266
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 2 cut(s) 582, 801
BmcAI AGTACT 1 cut(s) 1041
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 921
BmgT120I GGNCC 5 cut(s) 82, 236, 237, 251, 941
BmiI GGNNCC 4 cut(s) 83, 238, 346, 660
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 415
BmtI GCTAGC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 694
Bpu10I CCTNAGC 1 cut(s) 1046
BpuEI CTTGAG 1 cut(s) 702
BsaBI GATNNNNATC 1 cut(s) 609
BsaJI CCNNGG 3 cut(s) 247, 490, 746
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 3 cut(s) 602, 662, 699
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 247, 490, 746
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 839, 1037
BseNI ACTGG 3 cut(s) 602, 662, 699
BseRI GAGGAG 4 cut(s) 56, 59, 109, 208
BseSI GKGCMC 2 cut(s) 240, 513
BseX3I CGGCCG 1 cut(s) 493
BseXI GCAGC 5 cut(s) 568, 596, 673, 715, 805
Bsh1236I CGCG 2 cut(s) 249, 498
Bsh1285I CGRYCG 2 cut(s) 304, 496
BshFI GGCC 8 cut(s) 238, 252, 269, 335, 363, 495, 917, 943
BsiEI CGRYCG 2 cut(s) 304, 496
BsiHKAI GWGCWC 2 cut(s) 18, 710
BsiHKCI CYCGRG 1 cut(s) 921
BslI CCNNNNNNNGG 1 cut(s) 79
BsnI GGCC 8 cut(s) 238, 252, 269, 335, 363, 495, 917, 943
BsoBI CYCGRG 1 cut(s) 921
Bsp120I GGGCCC 1 cut(s) 236
Bsp1286I GDGCHC 4 cut(s) 18, 240, 513, 710
Bsp143I GATC 3 cut(s) 635, 658, 894
Bsp19I CCATGG 1 cut(s) 746
BspACI CCGC 9 cut(s) 85, 247, 249, 297, 300, 440, 443, 496, 504
BspANI GGCC 8 cut(s) 238, 252, 269, 335, 363, 495, 917, 943
BspCNI CTCAG 2 cut(s) 838, 1038
BspFNI CGCG 2 cut(s) 249, 498
BspLI GGNNCC 4 cut(s) 83, 238, 346, 660
BspMAI CTGCAG 2 cut(s) 586, 805
BspOI GCTAGC 1 cut(s) 297
BspPI GGATC 3 cut(s) 643, 653, 666
BsrI ACTGG 3 cut(s) 602, 662, 699
BssECI CCNNGG 3 cut(s) 247, 490, 746
BssMI GATC 3 cut(s) 635, 658, 894
BssT1I CCWWGG 1 cut(s) 746
Bst2UI CCWGG 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 995
BstC8I GCNNGC 3 cut(s) 295, 619, 996
BstDEI CTNAG 2 cut(s) 825, 1046
BstDSI CCRYGG 2 cut(s) 247, 746
BstFNI CGCG 2 cut(s) 249, 498
BstKTI GATC 3 cut(s) 638, 661, 897
BstMBI GATC 3 cut(s) 635, 658, 894
BstMCI CGRYCG 2 cut(s) 304, 496
BstMWI GCNNNNNNNGC 4 cut(s) 303, 472, 647, 995
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 2 cut(s) 582, 801
BstSLI GKGCMC 2 cut(s) 240, 513
BstUI CGCG 2 cut(s) 249, 498
BstV1I GCAGC 5 cut(s) 568, 596, 673, 715, 805
BstX2I RGATCY 2 cut(s) 635, 658
BstYI RGATCY 2 cut(s) 635, 658
BstZI CGGCCG 1 cut(s) 493
BsuRI GGCC 8 cut(s) 238, 252, 269, 335, 363, 495, 917, 943
BtgI CCRYGG 2 cut(s) 247, 746
BtgZI GCGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 692
Cac8I GCNNGC 3 cut(s) 295, 619, 996
CaiI CAGNNNCTG 1 cut(s) 668
Cfr13I GGNCC 5 cut(s) 82, 236, 237, 251, 941
Cfr42I CCGCGG 1 cut(s) 250
CseI GACGC 1 cut(s) 487
Csp6I GTAC 2 cut(s) 388, 1040
CviAII CATG 4 cut(s) 365, 679, 747, 796
CviQI GTAC 2 cut(s) 388, 1040
DdeI CTNAG 2 cut(s) 825, 1046
DpnI GATC 3 cut(s) 637, 660, 896
DpnII GATC 3 cut(s) 635, 658, 894
EaeI YGGCCR 4 cut(s) 267, 333, 493, 915
EagI CGGCCG 1 cut(s) 493
EciI GGCGGA 1 cut(s) 74
EclXI CGGCCG 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 746
Eco24I GRGCYC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 82
Eco52I CGGCCG 1 cut(s) 493
Eco88I CYCGRG 1 cut(s) 921
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 746
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 746
FaeI CATG 4 cut(s) 368, 682, 750, 799
FatI CATG 4 cut(s) 364, 678, 746, 795
FriOI GRGCYC 1 cut(s) 240
FspBI CTAG 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 694
HaeIII GGCC 8 cut(s) 238, 252, 269, 335, 363, 495, 917, 943
HgaI GACGC 1 cut(s) 487
Hin1II CATG 4 cut(s) 368, 682, 750, 799
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 5 cut(s) 175, 223, 243, 313, 352
HphI GGTGA 3 cut(s) 460, 478, 514
Hpy188I TCNGA 3 cut(s) 174, 310, 828
Hpy188III TCNNGA 5 cut(s) 229, 422, 656, 711, 719
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 3 cut(s) 133, 524, 774
HpyCH4V TGCA 4 cut(s) 584, 650, 731, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 303, 472, 647, 995
HpyF3I CTNAG 2 cut(s) 825, 1046
Hsp92II CATG 4 cut(s) 368, 682, 750, 799
KspI CCGCGG 1 cut(s) 250
Kzo9I GATC 3 cut(s) 635, 658, 894
LmnI GCTCC 2 cut(s) 311, 713
Lsp1109I GCAGC 5 cut(s) 568, 596, 673, 715, 805
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 294
MalI GATC 3 cut(s) 637, 660, 896
MboI GATC 3 cut(s) 635, 658, 894
MboII GAAGA 2 cut(s) 273, 276
MfeI CAATTG 2 cut(s) 76, 768
MflI RGATCY 2 cut(s) 635, 658
MhlI GDGCHC 4 cut(s) 18, 240, 513, 710
MlsI TGGCCA 2 cut(s) 269, 917
MluCI AATT 4 cut(s) 76, 383, 461, 768
MluNI TGGCCA 2 cut(s) 269, 917
MlyI GAGTC 1 cut(s) 217
Mox20I TGGCCA 2 cut(s) 269, 917
MscI TGGCCA 2 cut(s) 269, 917
MslI CAYNNNNRTG 2 cut(s) 259, 890
Msp20I TGGCCA 2 cut(s) 269, 917
MspA1I CMGCKG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 266
MunI CAATTG 2 cut(s) 76, 768
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 2 cut(s) 249, 498
MwoI GCNNNNNNNGC 4 cut(s) 303, 472, 647, 995
NcoI CCATGG 1 cut(s) 746
NdeII GATC 3 cut(s) 635, 658, 894
NheI GCTAGC 1 cut(s) 293
NlaIII CATG 4 cut(s) 368, 682, 750, 799
NlaIV GGNNCC 4 cut(s) 83, 238, 346, 660
NmeAIII GCCGAG 1 cut(s) 471
PfeI GAWTC 4 cut(s) 175, 243, 313, 352
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 4 cut(s) 83, 238, 346, 660
PspOMI GGGCCC 1 cut(s) 236
PspPI GGNCC 5 cut(s) 82, 236, 237, 251, 941
PstI CTGCAG 2 cut(s) 586, 805
PstNI CAGNNNCTG 1 cut(s) 668
PsuI RGATCY 2 cut(s) 635, 658
RsaI GTAC 2 cut(s) 389, 1041
RsaNI GTAC 2 cut(s) 388, 1040
RseI CAYNNNNRTG 2 cut(s) 259, 890
SacII CCGCGG 1 cut(s) 250
Sau3AI GATC 3 cut(s) 635, 658, 894
Sau96I GGNCC 5 cut(s) 82, 236, 237, 251, 941
ScaI AGTACT 1 cut(s) 1041
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 4 cut(s) 18, 240, 513, 710
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 2 cut(s) 582, 801
Sfr303I CCGCGG 1 cut(s) 250
SgrBI CCGCGG 1 cut(s) 250
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 259, 890
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
Sse9I AATT 4 cut(s) 76, 383, 461, 768
SsiI CCGC 9 cut(s) 85, 247, 249, 297, 300, 440, 443, 496, 504
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 746
TaqI TCGA 2 cut(s) 221, 375
TasI AATT 4 cut(s) 76, 383, 461, 768
TatI WGTACW 1 cut(s) 1039
TauI GCSGC 6 cut(s) 252, 300, 442, 445, 498, 506
TfiI GAWTC 4 cut(s) 175, 243, 313, 352
TscAI CASTG 1 cut(s) 699
TseI GCWGC 5 cut(s) 581, 584, 686, 728, 818
TspDTI ATGAA 2 cut(s) 276, 565
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 1 cut(s) 699
VpaK11BI GGWCC 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.