Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

55967332 .. 55970467

Gene Structure 3136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG326300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCGATATGGGTTCCCAGAATCATAAAGGCCATGAGTGGTTCGACGGCAAATTGTACGCTGATAAAGACGGATTGCTTTCCCCTAATCACGATGCCCAATCAACGCCGCCTCATCAATCCCCTAAATTGCTCACCTTGCCCACCATTCTCACCCTCGGCCGCGTCGCCGCCGTGCCTCTTCTCATCAGCACTTTCTATGTGGATAGTTGGTTGGGAAAAACTGCTACAACAAGTATATTCATCGCTGCAGCGATTACTGACTGGCTTGATGGCTATCTTGCTCGCAAGATGAGGTTAGGATCGGCTTTTGGTGCATTTCTGGATCCAGTCGCTGATAAGCTCATGGTTGCTGCTACGCTGGTTTTATTGTGCTCCAGACCTCAAGATGTTGCTGCATTTGGGCAAGTGCCATGGCTATTGGTTGTTCCTTCAATTGCCATAATAGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCCAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCACACAGATGATCGCACTAACTATCCTCTTGGCCACCCGAGATAGCAGTCTTGGAGGACCAGAGTTTGTAGTAGCCTCTGGGGTTGTTCTGCTTTATATATCAGCAGGGCTTGCTGTATGGTCTTTAGCTGTGTATATGAGCAAGATATGGAAAGTACTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

239

Amino Acids

25.77

Weight (kDa)

8.99

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	46 - 224	4.5e-30	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	165
AciI	CCGC	3 cut(s)	110, 163, 171
AclWI	GGATC	3 cut(s)	310, 320, 333
AcoI	YGGCCR	3 cut(s)	3, 160, 582
AfaI	GTAC	2 cut(s)	59, 708
AgsI	TTSAA	1 cut(s)	435
AluBI	AGCT	3 cut(s)	343, 505, 680
AluI	AGCT	3 cut(s)	343, 505, 680
Alw21I	GWGCWC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	310, 320, 333
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	588
AoxI	GGCC	4 cut(s)	3, 31, 160, 582
ApeKI	GCWGC	5 cut(s)	248, 251, 353, 395, 485
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	2 cut(s)	127, 145
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	608
BalI	TGGCCA	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	377
BbvCI	CCTCAGC	1 cut(s)	713
BbvI	GCAGC	5 cut(s)	235, 263, 340, 382, 472
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	2 cut(s)	64, 158
BfmI	CTRYAG	2 cut(s)	249, 468
BisI	GCNGC	8 cut(s)	110, 163, 171, 249, 252, 354, 396, 486
BlsI	GCNGC	8 cut(s)	111, 164, 172, 250, 253, 355, 397, 487
BmcAI	AGTACT	1 cut(s)	708
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	16, 327
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	361
Bpu10I	CCTNAGC	1 cut(s)	713
BpuEI	CTTGAG	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	157, 413
Bse1I	ACTGG	2 cut(s)	269, 329
Bse8I	GATNNNNATC	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	157, 413
BseJI	GATNNNNATC	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	506, 704
BseNI	ACTGG	2 cut(s)	269, 329
BseX3I	CGGCCG	1 cut(s)	160
BseXI	GCAGC	5 cut(s)	235, 263, 340, 382, 472
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	4 cut(s)	5, 33, 162, 584
BsiEI	CGRYCG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	588
BsnI	GGCC	4 cut(s)	5, 33, 162, 584
BsoBI	CYCGRG	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	302, 325, 561
Bsp19I	CCATGG	1 cut(s)	413
BspACI	CCGC	3 cut(s)	110, 163, 171
BspANI	GGCC	4 cut(s)	5, 33, 162, 584
BspCNI	CTCAG	2 cut(s)	505, 705
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	16, 327
BspMAI	CTGCAG	2 cut(s)	253, 472
BspPI	GGATC	3 cut(s)	310, 320, 333
BsrI	ACTGG	2 cut(s)	269, 329
BssECI	CCNNGG	2 cut(s)	157, 413
BssMI	GATC	3 cut(s)	302, 325, 561
BssT1I	CCWWGG	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	286, 663
BstDEI	CTNAG	2 cut(s)	492, 713
BstDSI	CCRYGG	1 cut(s)	413
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	3 cut(s)	305, 328, 564
BstMBI	GATC	3 cut(s)	302, 325, 561
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 314, 662
BstSFI	CTRYAG	2 cut(s)	249, 468
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	5 cut(s)	235, 263, 340, 382, 472
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZI	CGGCCG	1 cut(s)	160
BsuRI	GGCC	4 cut(s)	5, 33, 162, 584
BtgI	CCRYGG	1 cut(s)	413
BtgZI	GCGATG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	286, 663
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	608
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	58, 707
CviAII	CATG	4 cut(s)	35, 346, 414, 463
CviQI	GTAC	2 cut(s)	58, 707
DdeI	CTNAG	2 cut(s)	492, 713
DpnI	GATC	3 cut(s)	304, 327, 563
DpnII	GATC	3 cut(s)	302, 325, 561
EaeI	YGGCCR	3 cut(s)	3, 160, 582
EagI	CGGCCG	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EclXI	CGGCCG	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	608
Eco52I	CGGCCG	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	588
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	4 cut(s)	38, 349, 417, 466
FatI	CATG	4 cut(s)	34, 345, 413, 462
Fnu4HI	GCNGC	8 cut(s)	110, 163, 171, 249, 252, 354, 396, 486
Fsp4HI	GCNGC	8 cut(s)	110, 163, 171, 249, 252, 354, 396, 486
GluI	GCNGC	8 cut(s)	110, 163, 171, 249, 252, 354, 396, 486
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	4 cut(s)	5, 33, 162, 584
HgaI	GACGC	1 cut(s)	154
Hin1II	CATG	4 cut(s)	38, 349, 417, 466
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	22
HphI	GGTGA	2 cut(s)	127, 145
Hpy188I	TCNGA	1 cut(s)	495
Hpy188III	TCNNGA	4 cut(s)	92, 323, 378, 386
Hpy99I	CGWCG	2 cut(s)	50, 170
HpyAV	CCTTC	1 cut(s)	441
HpyCH4V	TGCA	4 cut(s)	251, 317, 398, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 314, 662
HpyF3I	CTNAG	2 cut(s)	492, 713
Hsp92II	CATG	4 cut(s)	38, 349, 417, 466
Kzo9I	GATC	3 cut(s)	302, 325, 561
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	9 cut(s)	32, 250, 308, 342, 347, 391, 615, 624, 642
Lsp1109I	GCAGC	5 cut(s)	235, 263, 340, 382, 472
LweI	GCATC	1 cut(s)	85
MalI	GATC	3 cut(s)	304, 327, 563
MboI	GATC	3 cut(s)	302, 325, 561
MboII	GAAGA	1 cut(s)	173
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	377
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	3 cut(s)	53, 128, 435
MluNI	TGGCCA	1 cut(s)	584
Mox20I	TGGCCA	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	584
MslI	CAYNNNNRTG	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	584
MunI	CAATTG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	139, 314, 662
NcoI	CCATGG	1 cut(s)	413
NdeII	GATC	3 cut(s)	302, 325, 561
NlaIII	CATG	4 cut(s)	38, 349, 417, 466
NlaIV	GGNNCC	2 cut(s)	16, 327
NmeAIII	GCCGAG	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	8 cut(s)	111, 164, 172, 250, 253, 355, 397, 487
PspN4I	GGNNCC	2 cut(s)	16, 327
PspPI	GGNCC	1 cut(s)	608
PstI	CTGCAG	2 cut(s)	253, 472
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	59, 708
RsaNI	GTAC	2 cut(s)	58, 707
RseI	CAYNNNNRTG	1 cut(s)	557
SatI	GCNGC	8 cut(s)	110, 163, 171, 249, 252, 354, 396, 486
Sau3AI	GATC	3 cut(s)	302, 325, 561
Sau96I	GGNCC	1 cut(s)	608
ScaI	AGTACT	1 cut(s)	708
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	8 cut(s)	140, 299, 345, 385, 451, 507, 682, 719
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	2 cut(s)	249, 468
SinI	GGWCC	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	53, 128, 435
SsiI	CCGC	3 cut(s)	110, 163, 171
StyI	CCWWGG	1 cut(s)	413
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	53, 128, 435
TatI	WGTACW	1 cut(s)	706
TauI	GCSGC	3 cut(s)	112, 165, 173
TfiI	GAWTC	1 cut(s)	22
TseI	GCWGC	5 cut(s)	248, 251, 353, 395, 485
TspDTI	ATGAA	1 cut(s)	232
TspGWI	ACGGA	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	608
ZrmI	AGTACT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.