Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

22916992 .. 22920636

Gene Structure 3645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1114900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCAGCCCTGGTGCTCAAAATGACCACAGCAGCCTCCTCTATATACCCCAAAAAGCCCTACCAAATCCTCTTCAATTCCATCTCCTCTCCCTCCCCTCCCTCAAATCGTAAAATCCTCATTGCAGCATTATCGCAAACACATAAATACTCCGGCTGCAGGATAACCCCCTGCGCACCATTCCTCCCTTTTCCCCAAAACCTGTCCCCCGGATTCCCTAATTGCTTCTCCGCCTCCTCTTCCTCTCGCAACCGCAGTGACGCTAGTGGGGTTTCCTCCGAAGATCGCGGAGAGTCATTTGTTGGGTCCGGCTCTGAGTCCGGCCCCGGTGGTGGTCTTATGGCCGATATGGGTTCGGCGAATCATAAAGGCGCCGATTGGTACGACAGCCCATTGTACCCGAACCAAGACGAATTGCTTTCTCCTCTGCAACATCAACAACAAAAACAACAGCAGCCGCAATCCCAATCCTCCTCCAAATTCCTCACCTTGCCCACCATTCTAACCCTCGGCCGCGTCGCCTCCGTGCCCGTTCTCATTAGCACTTTCTATGTCGATAGTTGGTGGGGAACAACTGCCACAACTAGTATTTTCATTGCTGCAGCAATTACTGATTGGCTCGATGGGTATATTGCTCGGAAGATGAGATCAGGATCTGCTTTTGGCGCATTTTTGGATCCGGTAGCTGATAAGCTCATGGTTGCAGCGACACTGGTTTTATTGTGTTCTAGGCCTTTGGATGTTGCTATGTTTGGGCAAGTTCCATGGCTATTTGTTGTTCCTTCAATTGCCATAATTGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCTAAACTTTTAGAGGCTGTAGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCACACAAATGATAGCACTAACTATCCTCTTGGCAACCCGAGACAACAGCCTTGGAAGACCAGAGGTTCTAGTAGCTTCTGGTGTTGTTTTGCTTTATGTTTCAGCAGGCCTTGCTGTGTGGTCATTGGTTGTGTACATGAGCAAGATATGGAAGGTACTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

357

Amino Acids

38.33

Weight (kDa)

9.33

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	163 - 341	5.6e-30	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	371
AccII	CGCG	2 cut(s)	288, 516
AciI	CCGC	5 cut(s)	231, 253, 288, 458, 514
AclWI	GGATC	3 cut(s)	661, 671, 684
AcoI	YGGCCR	2 cut(s)	342, 511
AcsI	RAATTY	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	4 cut(s)	383, 398, 1037, 1059
AfiI	CCNNNNNNNGG	2 cut(s)	159, 332
AgsI	TTSAA	2 cut(s)	76, 786
AhlI	ACTAGT	1 cut(s)	584
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	4 cut(s)	686, 694, 872, 977
AluI	AGCT	4 cut(s)	686, 694, 872, 977
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	936
AlwI	GGATC	3 cut(s)	661, 671, 684
AlwNI	CAGNNNCTG	1 cut(s)	656
Ama87I	CYCGRG	1 cut(s)	939
AoxI	GGCC	5 cut(s)	322, 342, 511, 731, 1009
ApeKI	GCWGC	8 cut(s)	32, 125, 156, 454, 599, 602, 704, 836
ApoI	RAATTY	1 cut(s)	479
AspLEI	GCGC	3 cut(s)	176, 374, 668
AspS9I	GGNCC	2 cut(s)	306, 323
AsuC2I	CCSGG	2 cut(s)	210, 327
AsuHPI	GGTGA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	939
AvaII	GGWCC	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	964
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	1064
BbvI	GCAGC	8 cut(s)	44, 137, 143, 466, 586, 614, 716, 823
BccI	CCATC	2 cut(s)	89, 617
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BciT130I	CCWGG	1 cut(s)	11
BcnI	CCSGG	2 cut(s)	210, 327
BcoDI	GTCTC	1 cut(s)	936
BcuI	ACTAGT	1 cut(s)	584
BfaI	CTAG	4 cut(s)	264, 585, 729, 971
BfmI	CTRYAG	4 cut(s)	157, 600, 819, 867
BfoI	RGCGCY	1 cut(s)	375
Bme1390I	CCNGG	3 cut(s)	11, 210, 327
Bme18I	GGWCC	1 cut(s)	306
BmeT110I	CYCGRG	1 cut(s)	939
BmgT120I	GGNCC	2 cut(s)	306, 323
BmiI	GGNNCC	4 cut(s)	307, 325, 373, 678
BmrFI	CCNGG	3 cut(s)	11, 210, 327
BpiI	GAAGAC	1 cut(s)	964
Bpu10I	CCTNAGC	1 cut(s)	1064
BpuMI	CCSGG	2 cut(s)	210, 327
BsaBI	GATNNNNATC	1 cut(s)	652
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	6 cut(s)	9, 208, 325, 508, 764, 952
BsaWI	WCCGGW	1 cut(s)	679
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 332
Bse1I	ACTGG	1 cut(s)	717
Bse3DI	GCAATG	2 cut(s)	120, 594
Bse8I	GATNNNNATC	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	6 cut(s)	9, 208, 325, 508, 764, 952
BseGI	GGATG	1 cut(s)	745
BseJI	GATNNNNATC	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	159, 332
BseMI	GCAATG	2 cut(s)	120, 594
BseMII	CTCAG	3 cut(s)	306, 857, 1055
BseNI	ACTGG	1 cut(s)	717
BseRI	GAGGAG	5 cut(s)	28, 76, 226, 414, 463
BseSI	GKGCMC	1 cut(s)	531
BseX3I	CGGCCG	1 cut(s)	511
BseXI	GCAGC	8 cut(s)	44, 137, 143, 466, 586, 614, 716, 823
Bsh1236I	CGCG	2 cut(s)	288, 516
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	5 cut(s)	324, 344, 513, 733, 1011
BshNI	GGYRCC	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	939
BsiSI	CCGG	6 cut(s)	153, 210, 309, 321, 327, 680
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	159, 332
BsmAI	GTCTC	1 cut(s)	936
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	5 cut(s)	324, 344, 513, 733, 1011
BsoBI	CYCGRG	1 cut(s)	939
Bsp1286I	GDGCHC	2 cut(s)	18, 531
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp143I	GATC	4 cut(s)	283, 647, 653, 676
Bsp19I	CCATGG	1 cut(s)	764
BspACI	CCGC	5 cut(s)	231, 253, 288, 458, 514
BspANI	GGCC	5 cut(s)	324, 344, 513, 733, 1011
BspCNI	CTCAG	3 cut(s)	307, 856, 1056
BspFNI	CGCG	2 cut(s)	288, 516
BspLI	GGNNCC	4 cut(s)	307, 325, 373, 678
BspMAI	CTGCAG	3 cut(s)	161, 604, 823
BspPI	GGATC	3 cut(s)	661, 671, 684
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	120, 594
BsrGI	TGTACA	1 cut(s)	1035
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	6 cut(s)	9, 208, 325, 508, 764, 952
BssMI	GATC	4 cut(s)	283, 647, 653, 676
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	764, 952
Bst2UI	CCWGG	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	77, 244
BstACI	GRCGYC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstAUI	TGTACA	1 cut(s)	1035
BstC8I	GCNNGC	1 cut(s)	1009
BstDEI	CTNAG	3 cut(s)	315, 843, 1064
BstDSI	CCRYGG	1 cut(s)	764
BstF5I	GGATG	1 cut(s)	745
BstFNI	CGCG	2 cut(s)	288, 516
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	3 cut(s)	176, 374, 668
BstKTI	GATC	4 cut(s)	286, 650, 656, 679
BstMAI	GTCTC	1 cut(s)	936
BstMBI	GATC	4 cut(s)	283, 647, 653, 676
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	2 cut(s)	665, 1013
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	3 cut(s)	9, 208, 325
BstSFI	CTRYAG	4 cut(s)	157, 600, 819, 867
BstSLI	GKGCMC	1 cut(s)	531
BstUI	CGCG	2 cut(s)	288, 516
BstV1I	GCAGC	8 cut(s)	44, 137, 143, 466, 586, 614, 716, 823
BstV2I	GAAGAC	1 cut(s)	964
BstX2I	RGATCY	2 cut(s)	653, 676
BstYI	RGATCY	2 cut(s)	653, 676
BstZI	CGGCCG	1 cut(s)	511
BsuRI	GGCC	5 cut(s)	324, 344, 513, 733, 1011
BtgI	CCRYGG	1 cut(s)	764
BtsCI	GGATG	1 cut(s)	745
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 710
Cac8I	GCNNGC	1 cut(s)	1009
CaiI	CAGNNNCTG	1 cut(s)	656
CfoI	GCGC	3 cut(s)	176, 374, 668
Cfr13I	GGNCC	2 cut(s)	306, 323
CseI	GACGC	2 cut(s)	269, 505
Csp6I	GTAC	4 cut(s)	382, 397, 1036, 1058
CviAII	CATG	4 cut(s)	697, 765, 814, 1039
CviQI	GTAC	4 cut(s)	382, 397, 1036, 1058
DdeI	CTNAG	3 cut(s)	315, 843, 1064
DinI	GGCGCC	1 cut(s)	373
DpnI	GATC	4 cut(s)	285, 649, 655, 678
DpnII	GATC	4 cut(s)	283, 647, 653, 676
EaeI	YGGCCR	2 cut(s)	342, 511
EagI	CGGCCG	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	77, 244
EarI	CTCTTC	2 cut(s)	77, 244
EciI	GGCGGA	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	511
Eco130I	CCWWGG	2 cut(s)	764, 952
Eco147I	AGGCCT	2 cut(s)	733, 1011
Eco47I	GGWCC	1 cut(s)	306
Eco52I	CGGCCG	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	939
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	2 cut(s)	764, 952
EgeI	GGCGCC	1 cut(s)	373
EheI	GGCGCC	1 cut(s)	373
ErhI	CCWWGG	2 cut(s)	764, 952
FaeI	CATG	4 cut(s)	700, 768, 817, 1042
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	4 cut(s)	696, 764, 813, 1038
FokI	GGATG	1 cut(s)	752
FspBI	CTAG	4 cut(s)	264, 585, 729, 971
FspI	TGCGCA	1 cut(s)	175
GlaI	GCGC	3 cut(s)	175, 373, 667
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	5 cut(s)	324, 344, 513, 733, 1011
HapII	CCGG	6 cut(s)	153, 210, 309, 321, 327, 680
HgaI	GACGC	2 cut(s)	269, 505
HhaI	GCGC	3 cut(s)	176, 374, 668
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	4 cut(s)	700, 768, 817, 1042
Hin6I	GCGC	3 cut(s)	174, 372, 666
HinP1I	GCGC	3 cut(s)	174, 372, 666
HinfI	GANTC	4 cut(s)	213, 293, 317, 361
HpaII	CCGG	6 cut(s)	153, 210, 309, 321, 327, 680
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	1036
Hpy188I	TCNGA	4 cut(s)	280, 316, 639, 846
Hpy188III	TCNNGA	1 cut(s)	651
Hpy8I	GTNNAC	1 cut(s)	1036
Hpy99I	CGWCG	1 cut(s)	521
HpyAV	CCTTC	2 cut(s)	792, 1048
HpyCH4V	TGCA	6 cut(s)	125, 159, 430, 602, 704, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	665, 1013
HpyF3I	CTNAG	3 cut(s)	315, 843, 1064
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	700, 768, 817, 1042
HspAI	GCGC	3 cut(s)	174, 372, 666
KasI	GGCGCC	1 cut(s)	371
Kzo9I	GATC	4 cut(s)	283, 647, 653, 676
Lsp1109I	GCAGC	8 cut(s)	44, 137, 143, 466, 586, 614, 716, 823
MaeI	CTAG	4 cut(s)	264, 585, 729, 971
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	4 cut(s)	285, 649, 655, 678
MboI	GATC	4 cut(s)	283, 647, 653, 676
MboII	GAAGA	5 cut(s)	64, 231, 293, 652, 969
MfeI	CAATTG	1 cut(s)	786
MflI	RGATCY	2 cut(s)	653, 676
MhlI	GDGCHC	2 cut(s)	18, 531
MluCI	AATT	7 cut(s)	76, 220, 413, 479, 606, 786, 795
Mly113I	GGCGCC	1 cut(s)	372
MlyI	GAGTC	2 cut(s)	302, 326
MslI	CAYNNNNRTG	1 cut(s)	908
MspI	CCGG	6 cut(s)	153, 210, 309, 321, 327, 680
MspR9I	CCNGG	3 cut(s)	11, 210, 327
MunI	CAATTG	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	2 cut(s)	288, 516
MwoI	GCNNNNNNNGC	2 cut(s)	665, 1013
NarI	GGCGCC	1 cut(s)	372
NciI	CCSGG	2 cut(s)	210, 327
NcoI	CCATGG	1 cut(s)	764
NdeII	GATC	4 cut(s)	283, 647, 653, 676
NlaIII	CATG	4 cut(s)	700, 768, 817, 1042
NlaIV	GGNNCC	4 cut(s)	307, 325, 373, 678
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	257
NsbI	TGCGCA	1 cut(s)	175
PceI	AGGCCT	2 cut(s)	733, 1011
PfeI	GAWTC	2 cut(s)	213, 361
PleI	GAGTC	2 cut(s)	301, 325
PluTI	GGCGCC	1 cut(s)	375
PpsI	GAGTC	2 cut(s)	301, 325
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	4 cut(s)	307, 325, 373, 678
PspPI	GGNCC	2 cut(s)	306, 323
PstI	CTGCAG	3 cut(s)	161, 604, 823
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	2 cut(s)	653, 676
RsaI	GTAC	4 cut(s)	383, 398, 1037, 1059
RsaNI	GTAC	4 cut(s)	382, 397, 1036, 1058
RseI	CAYNNNNRTG	1 cut(s)	908
Sau3AI	GATC	4 cut(s)	283, 647, 653, 676
Sau96I	GGNCC	2 cut(s)	306, 323
SchI	GAGTC	2 cut(s)	302, 326
ScrFI	CCNGG	3 cut(s)	11, 210, 327
SduI	GDGCHC	2 cut(s)	18, 531
SetI	ASST	9 cut(s)	204, 491, 688, 696, 874, 969, 979, 1059, 1070
SfcI	CTRYAG	4 cut(s)	157, 600, 819, 867
SfoI	GGCGCC	1 cut(s)	373
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	908
SpeI	ACTAGT	1 cut(s)	584
Sse9I	AATT	7 cut(s)	76, 220, 413, 479, 606, 786, 795
SseBI	AGGCCT	2 cut(s)	733, 1011
SsiI	CCGC	5 cut(s)	231, 253, 288, 458, 514
SspDI	GGCGCC	1 cut(s)	371
SspMI	CTAG	4 cut(s)	264, 585, 729, 971
StuI	AGGCCT	2 cut(s)	733, 1011
StyD4I	CCNGG	3 cut(s)	9, 208, 325
StyI	CCWWGG	2 cut(s)	764, 952
TaqI	TCGA	2 cut(s)	555, 621
TasI	AATT	7 cut(s)	76, 220, 413, 479, 606, 786, 795
TatI	WGTACW	1 cut(s)	1035
TauI	GCSGC	2 cut(s)	460, 516
TfiI	GAWTC	2 cut(s)	213, 361
TscAI	CASTG	2 cut(s)	262, 717
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	8 cut(s)	32, 125, 156, 454, 599, 602, 704, 836
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	583
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	2 cut(s)	262, 717
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	479
XspI	CTAG	4 cut(s)	264, 585, 729, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.