Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

20396597 .. 20398653

Gene Structure 2057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGTGAAGAAGACACCGCGACGGTGGATCAGAACAGTTTCGGTGGTGGCAAAGATTCATTGCTTCGTAATCGTCATTCGTCGCCATTGCCTTCACCGACACAGCTTTCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTTGGCCGTGTAGCTGCCGTTCCGATTCTCGTCGCCACCTTTTACGTTGATTGCTGGTGGGGAAGAACTGCTACGACAAGTATTTTCATTGCAGCAGCCATTACAGATTGGCTTGATGGATATATTGCACGGAAGATGAGATTGGGTTCTGAATTTGGTGCATTTTTGGATCCAGTGGCAGATAAGCTTATGGTAGCAGCTACATTGATATTGTTGTGCACTAAACCAATGGTCGCCGTTGTCTTAGGACCAGTTCCATGGTTAGTGACAGTACCTTCAATCGCCATCATTGGTAGAGAGATTACTATGTCTGCAGTAAGAGAATGGGCTGCATCTCAAAACGGCAAGCTTTCAGAGGCTGTTGCTGTAAATAGCTTGGGAAAGTGGAAAACTGCAACGCAGATGATAGCGCTAACCATACTTCTTGCAAGCCGGGATAGCAGTTTTGAGAGACTATTACCGTCGGGTATTGGGTTGCTCTATGTATCTGCAGGGCTCTCTATATGGTCTTTAGTTGTTTATATGAGGAAGATATGGAGAGTACTGCTAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009668 GO:0009941 GO:0009987 GO:0010027 GO:0016043 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0061024 GO:0071704 GO:0071840 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

233

Amino Acids

25.22

Weight (kDa)

9.61

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	42 - 214	5.5e-31	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	3 cut(s)	36, 308, 321
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	296
AfaI	GTAC	2 cut(s)	417, 687
AfeI	AGCGCT	1 cut(s)	555
AgsI	TTSAA	1 cut(s)	423
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	6 cut(s)	106, 158, 331, 344, 493, 519
AluI	AGCT	6 cut(s)	106, 158, 331, 344, 493, 519
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	1 cut(s)	589
Alw44I	GTGCAC	1 cut(s)	361
AlwI	GGATC	3 cut(s)	36, 308, 321
AlwNI	CAGNNNCTG	1 cut(s)	503
Aor51HI	AGCGCT	1 cut(s)	555
AoxI	GGCC	1 cut(s)	148
ApaLI	GTGCAC	1 cut(s)	361
ApeKI	GCWGC	5 cut(s)	158, 236, 239, 341, 473
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	17, 87
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	642
BarI	GAAGNNNNNNTAC	2 cut(s)	199, 231
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	5 cut(s)	145, 248, 251, 353, 460
BccI	CCATC	2 cut(s)	254, 437
BceAI	ACGGC	4 cut(s)	135, 146, 365, 502
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	589
BfmI	CTRYAG	2 cut(s)	456, 633
BfoI	RGCGCY	1 cut(s)	557
BisI	GCNGC	5 cut(s)	159, 237, 240, 342, 474
BlsI	GCNGC	5 cut(s)	160, 238, 241, 343, 475
BmcAI	AGTACT	1 cut(s)	687
Bme1390I	CCNGG	1 cut(s)	578
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	578
BsaJI	CCNNGG	2 cut(s)	145, 401
Bse1I	ACTGG	2 cut(s)	317, 395
Bse3DI	GCAATG	4 cut(s)	59, 86, 125, 231
BseDI	CCNNGG	2 cut(s)	145, 401
BseMI	GCAATG	4 cut(s)	59, 86, 125, 231
BseNI	ACTGG	2 cut(s)	317, 395
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	5 cut(s)	145, 248, 251, 353, 460
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	577
BsmAI	GTCTC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	365, 642
Bsp143I	GATC	2 cut(s)	28, 313
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	2 cut(s)	460, 637
BspPI	GGATC	3 cut(s)	36, 308, 321
BsrDI	GCAATG	4 cut(s)	59, 86, 125, 231
BsrI	ACTGG	2 cut(s)	317, 395
BssECI	CCNNGG	2 cut(s)	145, 401
BssMI	GATC	2 cut(s)	28, 313
BssT1I	CCWWGG	2 cut(s)	145, 401
Bst4CI	ACNGT	5 cut(s)	25, 38, 136, 415, 606
BstC8I	GCNNGC	2 cut(s)	491, 574
BstDEI	CTNAG	1 cut(s)	388
BstDSI	CCRYGG	1 cut(s)	401
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	2 cut(s)	31, 316
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	2 cut(s)	28, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstSCI	CCNGG	1 cut(s)	576
BstSFI	CTRYAG	2 cut(s)	456, 633
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	5 cut(s)	145, 248, 251, 353, 460
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	491, 574
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	416, 686
CviAII	CATG	1 cut(s)	402
CviQI	GTAC	2 cut(s)	416, 686
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	2 cut(s)	30, 315
DpnII	GATC	2 cut(s)	28, 313
EaeI	YGGCCR	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	145, 401
Eco24I	GRGCYC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	392
Eco47III	AGCGCT	1 cut(s)	555
EcoT14I	CCWWGG	2 cut(s)	145, 401
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	2 cut(s)	145, 401
FaeI	CATG	1 cut(s)	405
FatI	CATG	1 cut(s)	401
Fnu4HI	GCNGC	5 cut(s)	159, 237, 240, 342, 474
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	5 cut(s)	159, 237, 240, 342, 474
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	5 cut(s)	159, 237, 240, 342, 474
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	577
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	1 cut(s)	405
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HindIII	AAGCTT	2 cut(s)	329, 491
HinfI	GANTC	2 cut(s)	56, 169
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	2 cut(s)	17, 87
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	4 cut(s)	33, 168, 295, 499
Hpy8I	GTNNAC	1 cut(s)	363
Hpy99I	CGWCG	4 cut(s)	25, 85, 179, 610
HpyAV	CCTTC	2 cut(s)	102, 429
HpyCH4III	ACNGT	5 cut(s)	25, 38, 136, 415, 606
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	9 cut(s)	236, 272, 305, 363, 458, 476, 539, 572, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpyF3I	CTNAG	1 cut(s)	388
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	405
HspAI	GCGC	1 cut(s)	554
Kzo9I	GATC	2 cut(s)	28, 313
LpnPI	CCDG	5 cut(s)	184, 330, 408, 590, 621
Lsp1109I	GCAGC	5 cut(s)	145, 248, 251, 353, 460
LweI	GCATC	1 cut(s)	485
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	30, 315
MboI	GATC	2 cut(s)	28, 313
MboII	GAAGA	6 cut(s)	20, 23, 102, 219, 289, 685
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	365, 642
MluCI	AATT	1 cut(s)	296
MnlI	CCTC	2 cut(s)	493, 663
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	140
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	582
NciI	CCSGG	1 cut(s)	578
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	2 cut(s)	28, 313
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	56, 169
PkrI	GCNGC	5 cut(s)	160, 238, 241, 343, 475
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	392
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PstI	CTGCAG	2 cut(s)	460, 637
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	2 cut(s)	417, 687
RsaNI	GTAC	2 cut(s)	416, 686
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	5 cut(s)	159, 237, 240, 342, 474
Sau3AI	GATC	2 cut(s)	28, 313
Sau96I	GGNCC	1 cut(s)	392
ScaI	AGTACT	1 cut(s)	687
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	2 cut(s)	365, 642
SetI	ASST	9 cut(s)	108, 160, 185, 192, 333, 346, 421, 495, 521
SfaNI	GCATC	1 cut(s)	485
SfcI	CTRYAG	2 cut(s)	456, 633
SinI	GGWCC	1 cut(s)	392
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	2 cut(s)	145, 401
TaaI	ACNGT	5 cut(s)	25, 38, 136, 415, 606
TaiI	ACGT	1 cut(s)	192
TasI	AATT	1 cut(s)	296
TatI	WGTACW	1 cut(s)	685
TfiI	GAWTC	2 cut(s)	56, 169
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	5 cut(s)	158, 236, 239, 341, 473
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	48, 220
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	324
VneI	GTGCAC	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.