Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

26319973 .. 26323535

Gene Structure 3563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1182900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCACCCCTGGTGCTCAAAATGACCACAGCAGCCTCCTGTATATACCCCAAAAAGCCCTACCAAATTCTCTTCAATTCCATCTTCTCCTCCACCTCCACCTCCACCTCCACCCCCTCCTCCTTCTCTCCCTCTTCACCCCCATTTGGTAAAAACTTCATCGAGGCATTAACGCACACGCGTAAATACTCCGGGTGCAGGATAACCCCCTGCGCACCCCTCCCGCCCCCAATTCTCCCTCTTCCCCTAAACCTAGCCCCCAGATTCCCTAAATGCTTCTCCGCCTCCTCCTCCTCCCGCAGCCGCAGCAACGCTAGTGGCGGTTCCTTCGAAGATCGCGGAGAGTCCTCTGGTGGGTCCGGCTCCGAGTCCGGCACCGGTGGTGTTGGTGGTCTTATGGCCGACATGGGTTCGGAGAATCATAAGGGCACCGATTGGTACGACAGCCAATTGTACCCGAACCAAGACGAATTGCTTTCTCCTCTGACACATCAACAAAAACAACAGCAGCAGCAATCCGAATCCTCCTCCAAATTCCTCACCTTGCCCACCATTCTGACTCTCGGCCGCGTCGCCGCCGTGCCGGTTCTCATTAGCACTTTCTACATCGATAGTTGGTGGGGAACAACTGCCACAACAAGTATTTTCATTGCTGCAGCAATTACTGATTGGCTCGATGGGTATATTGCTCGGAAGATGAAATTAGGATCTGCTTTTGGCGCATTTTTGGATCCGGTGGCTGATAAGCTCATGGTTGCAGCCACACTGGTTTTATTGTGTTCTAGGCCTTTGGACGTTGCCATGTTTGGGCAAGTTCCATGGCTGTTTGTCGTTCCTTCAATTGCCATAATTGGTAGAGAGATAACCATGTCAGCAGTTAGAGAATGGGCTGCTTCTCAGAACACTAAACTTTTAGAGGCTGTAGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCACACAGATGATAGCACTGACTATCCTCTTGGCAACCCGAGACAACAGTTTTGGAAGACCAGATGTTATCGTAGCTTCTGGTGTTTTTTTGCTTTATGTTTCAGCGGGGCTTGCCGTGTGGTCTTTGATCATGTATATGAGCAAGATATGGAAAGTACTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

375

Amino Acids

40.36

Weight (kDa)

9.24

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	181 - 358	4.5e-30	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	214
AccB1I	GGYRCC	2 cut(s)	374, 428
AccII	CGCG	3 cut(s)	181, 339, 570
AciI	CCGC	9 cut(s)	224, 282, 298, 304, 321, 339, 568, 576, 1061
AclWI	GGATC	3 cut(s)	715, 725, 738
AcoI	YGGCCR	2 cut(s)	399, 565
AcsI	RAATTY	2 cut(s)	66, 533
AfaI	GTAC	3 cut(s)	440, 455, 1113
AfiI	CCNNNNNNNGG	4 cut(s)	146, 198, 354, 807
AflIII	ACRYGT	1 cut(s)	179
AgeI	ACCGGT	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	76, 840
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	748, 926, 1031
AluI	AGCT	3 cut(s)	748, 926, 1031
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	990
AlwI	GGATC	3 cut(s)	715, 725, 738
Ama87I	CYCGRG	1 cut(s)	993
AoxI	GGCC	3 cut(s)	399, 565, 785
ApeKI	GCWGC	9 cut(s)	32, 300, 306, 508, 511, 653, 656, 758, 890
ApoI	RAATTY	2 cut(s)	66, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	989, 1021
AsiGI	ACCGGT	1 cut(s)	377
AspLEI	GCGC	2 cut(s)	215, 722
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	129, 532
AsuII	TTCGAA	1 cut(s)	330
AvaI	CYCGRG	1 cut(s)	993
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	730
BanI	GGYRCC	2 cut(s)	374, 428
BbsI	GAAGAC	1 cut(s)	1018
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	1118
BbvI	GCAGC	9 cut(s)	44, 312, 318, 520, 523, 640, 668, 770, 877
BccI	CCATC	2 cut(s)	89, 671
BceAI	ACGGC	2 cut(s)	563, 1055
BciT130I	CCWGG	1 cut(s)	11
BclI	TGATCA	1 cut(s)	1083
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	990
BfaI	CTAG	3 cut(s)	254, 315, 783
BfmI	CTRYAG	2 cut(s)	654, 921
BmcAI	AGTACT	1 cut(s)	1113
Bme1390I	CCNGG	2 cut(s)	11, 193
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	993
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	6 cut(s)	325, 358, 364, 376, 430, 732
BmrFI	CCNGG	2 cut(s)	11, 193
BpiI	GAAGAC	1 cut(s)	1018
Bpu10I	CCTNAGC	1 cut(s)	1118
Bpu14I	TTCGAA	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	193
Bsa29I	ATCGAT	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	9, 818
BsaWI	WCCGGW	2 cut(s)	377, 733
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 198, 354, 807
Bse118I	RCCGGY	2 cut(s)	377, 583
Bse1I	ACTGG	1 cut(s)	771
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	11
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	9, 818
BseLI	CCNNNNNNNGG	4 cut(s)	146, 198, 354, 807
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	2 cut(s)	911, 1109
BseNI	ACTGG	1 cut(s)	771
BseRI	GAGGAG	7 cut(s)	79, 109, 277, 280, 283, 471, 517
BseSI	GKGCMC	1 cut(s)	431
BseX3I	CGGCCG	1 cut(s)	565
BseXI	GCAGC	9 cut(s)	44, 312, 318, 520, 523, 640, 668, 770, 877
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	3 cut(s)	181, 339, 570
Bsh1285I	CGRYCG	1 cut(s)	568
BshFI	GGCC	3 cut(s)	401, 567, 787
BshNI	GGYRCC	2 cut(s)	374, 428
BshTI	ACCGGT	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	609
BsiEI	CGRYCG	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	993
BsiSI	CCGG	6 cut(s)	192, 360, 372, 378, 584, 734
BslI	CCNNNNNNNGG	4 cut(s)	146, 198, 354, 807
BsmAI	GTCTC	1 cut(s)	990
BsnI	GGCC	3 cut(s)	401, 567, 787
BsoBI	CYCGRG	1 cut(s)	993
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	18, 431
Bsp143I	GATC	4 cut(s)	334, 707, 730, 1083
Bsp19I	CCATGG	1 cut(s)	818
BspACI	CCGC	9 cut(s)	224, 282, 298, 304, 321, 339, 568, 576, 1061
BspANI	GGCC	3 cut(s)	401, 567, 787
BspCNI	CTCAG	2 cut(s)	910, 1110
BspDI	ATCGAT	1 cut(s)	609
BspFNI	CGCG	3 cut(s)	181, 339, 570
BspLI	GGNNCC	6 cut(s)	325, 358, 364, 376, 430, 732
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	3 cut(s)	715, 725, 738
BspT104I	TTCGAA	1 cut(s)	330
BspT107I	GGYRCC	2 cut(s)	374, 428
BsrDI	GCAATG	1 cut(s)	648
BsrFI	RCCGGY	2 cut(s)	377, 583
BsrI	ACTGG	1 cut(s)	771
BssAI	RCCGGY	2 cut(s)	377, 583
BssECI	CCNNGG	2 cut(s)	9, 818
BssMI	GATC	4 cut(s)	334, 707, 730, 1083
BssT1I	CCWWGG	1 cut(s)	818
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	1004
Bst6I	CTCTTC	3 cut(s)	77, 139, 246
BstBI	TTCGAA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	1068
BstDEI	CTNAG	2 cut(s)	897, 1118
BstDSI	CCRYGG	1 cut(s)	818
BstFNI	CGCG	3 cut(s)	181, 339, 570
BstHHI	GCGC	2 cut(s)	215, 722
BstKTI	GATC	4 cut(s)	337, 710, 733, 1086
BstMAI	GTCTC	1 cut(s)	990
BstMBI	GATC	4 cut(s)	334, 707, 730, 1083
BstMCI	CGRYCG	1 cut(s)	568
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 719, 1067
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	9, 191
BstSFI	CTRYAG	2 cut(s)	654, 921
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	3 cut(s)	181, 339, 570
BstV1I	GCAGC	9 cut(s)	44, 312, 318, 520, 523, 640, 668, 770, 877
BstV2I	GAAGAC	1 cut(s)	1018
BstX2I	RGATCY	2 cut(s)	707, 730
BstYI	RGATCY	2 cut(s)	707, 730
BstZI	CGGCCG	1 cut(s)	565
Bsu15I	ATCGAT	1 cut(s)	609
BsuRI	GGCC	3 cut(s)	401, 567, 787
BsuTUI	ATCGAT	1 cut(s)	609
BtgI	CCRYGG	1 cut(s)	818
BtsIMutI	CAGTG	2 cut(s)	764, 971
Cac8I	GCNNGC	1 cut(s)	1068
CfoI	GCGC	2 cut(s)	215, 722
Cfr10I	RCCGGY	2 cut(s)	377, 583
Cfr13I	GGNCC	1 cut(s)	357
ClaI	ATCGAT	1 cut(s)	609
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	3 cut(s)	439, 454, 1112
CspAI	ACCGGT	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	6 cut(s)	406, 751, 802, 819, 868, 1087
CviQI	GTAC	3 cut(s)	439, 454, 1112
DdeI	CTNAG	2 cut(s)	897, 1118
DpnI	GATC	4 cut(s)	336, 709, 732, 1085
DpnII	GATC	4 cut(s)	334, 707, 730, 1083
EaeI	YGGCCR	2 cut(s)	399, 565
EagI	CGGCCG	1 cut(s)	565
Eam1104I	CTCTTC	3 cut(s)	77, 139, 246
EarI	CTCTTC	3 cut(s)	77, 139, 246
EciI	GGCGGA	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	818
Eco147I	AGGCCT	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	357
Eco52I	CGGCCG	1 cut(s)	565
Eco88I	CYCGRG	1 cut(s)	993
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	818
ErhI	CCWWGG	1 cut(s)	818
FaeI	CATG	6 cut(s)	409, 754, 805, 822, 871, 1090
FatI	CATG	6 cut(s)	405, 750, 801, 818, 867, 1086
FauI	CCCGC	3 cut(s)	231, 305, 1054
FbaI	TGATCA	1 cut(s)	1083
FspBI	CTAG	3 cut(s)	254, 315, 783
FspI	TGCGCA	1 cut(s)	214
GlaI	GCGC	2 cut(s)	214, 721
HaeIII	GGCC	3 cut(s)	401, 567, 787
HapII	CCGG	6 cut(s)	192, 360, 372, 378, 584, 734
HgaI	GACGC	1 cut(s)	559
HhaI	GCGC	2 cut(s)	215, 722
Hin1II	CATG	6 cut(s)	409, 754, 805, 822, 871, 1090
Hin6I	GCGC	2 cut(s)	213, 720
HinP1I	GCGC	2 cut(s)	213, 720
HinfI	GANTC	6 cut(s)	264, 344, 368, 418, 521, 559
HpaII	CCGG	6 cut(s)	192, 360, 372, 378, 584, 734
HphI	GGTGA	2 cut(s)	129, 532
Hpy188I	TCNGA	7 cut(s)	367, 415, 486, 520, 558, 693, 900
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	3 cut(s)	133, 337, 846
HpyCH4III	ACNGT	1 cut(s)	1004
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	3 cut(s)	198, 656, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 719, 1067
HpyF3I	CTNAG	2 cut(s)	897, 1118
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	6 cut(s)	409, 754, 805, 822, 871, 1090
HspAI	GCGC	2 cut(s)	213, 720
Ksp22I	TGATCA	1 cut(s)	1083
Kzo9I	GATC	4 cut(s)	334, 707, 730, 1083
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	9 cut(s)	44, 312, 318, 520, 523, 640, 668, 770, 877
MaeI	CTAG	3 cut(s)	254, 315, 783
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	4 cut(s)	336, 709, 732, 1085
MboI	GATC	4 cut(s)	334, 707, 730, 1083
MboII	GAAGA	7 cut(s)	64, 76, 126, 233, 344, 706, 1023
MfeI	CAATTG	2 cut(s)	449, 840
MflI	RGATCY	2 cut(s)	707, 730
MhlI	GDGCHC	2 cut(s)	18, 431
MluI	ACGCGT	1 cut(s)	179
MlyI	GAGTC	3 cut(s)	353, 377, 553
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	2 cut(s)	962, 1091
MspA1I	CMGCKG	1 cut(s)	1061
MspI	CCGG	6 cut(s)	192, 360, 372, 378, 584, 734
MspR9I	CCNGG	2 cut(s)	11, 193
MunI	CAATTG	2 cut(s)	449, 840
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	3 cut(s)	181, 339, 570
MwoI	GCNNNNNNNGC	3 cut(s)	306, 719, 1067
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	818
NdeII	GATC	4 cut(s)	334, 707, 730, 1083
NlaIII	CATG	6 cut(s)	409, 754, 805, 822, 871, 1090
NlaIV	GGNNCC	6 cut(s)	325, 358, 364, 376, 430, 732
NmeAIII	GCCGAG	1 cut(s)	543
NmuCI	GTSAC	1 cut(s)	3
NsbI	TGCGCA	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	787
PfeI	GAWTC	3 cut(s)	264, 418, 521
PinAI	ACCGGT	1 cut(s)	377
PleI	GAGTC	3 cut(s)	352, 376, 553
PpsI	GAGTC	3 cut(s)	352, 376, 553
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	6 cut(s)	325, 358, 364, 376, 430, 732
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	658
PsuI	RGATCY	2 cut(s)	707, 730
RsaI	GTAC	3 cut(s)	440, 455, 1113
RsaNI	GTAC	3 cut(s)	439, 454, 1112
RseI	CAYNNNNRTG	2 cut(s)	962, 1091
SaqAI	TTAA	1 cut(s)	170
Sau3AI	GATC	4 cut(s)	334, 707, 730, 1083
Sau96I	GGNCC	1 cut(s)	357
ScaI	AGTACT	1 cut(s)	1113
SchI	GAGTC	3 cut(s)	353, 377, 553
ScrFI	CCNGG	2 cut(s)	11, 193
SduI	GDGCHC	2 cut(s)	18, 431
SfcI	CTRYAG	2 cut(s)	654, 921
SfuI	TTCGAA	1 cut(s)	330
SgrAI	CRCCGGYG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	962, 1091
SseBI	AGGCCT	1 cut(s)	787
SsiI	CCGC	9 cut(s)	224, 282, 298, 304, 321, 339, 568, 576, 1061
SspMI	CTAG	3 cut(s)	254, 315, 783
StuI	AGGCCT	1 cut(s)	787
StyD4I	CCNGG	2 cut(s)	9, 191
StyI	CCWWGG	1 cut(s)	818
TaaI	ACNGT	1 cut(s)	1004
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	4 cut(s)	162, 330, 609, 675
TatI	WGTACW	1 cut(s)	1111
TauI	GCSGC	3 cut(s)	306, 570, 578
TfiI	GAWTC	3 cut(s)	264, 418, 521
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	2 cut(s)	771, 978
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	9 cut(s)	32, 300, 306, 508, 511, 653, 656, 758, 890
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	148, 637, 713
TspRI	CASTG	2 cut(s)	771, 978
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	2 cut(s)	66, 533
XspI	CTAG	3 cut(s)	254, 315, 783
ZrmI	AGTACT	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.