Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

16715953 .. 16719505

Gene Structure 3553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCAGCCCTTGTGGTGCTCAAAATGACCACAGCAACCTCTCCTATAAAACCCATAATCCCCCAAAATCTCCTCCTTCTTCCCATTCGCTCTCTCTCTCGCTCCTCCTTCACCACCACCCGCCCCTTAACCTCATCATTAACCCCCAAAACCCAAATTCACAGTCTCAATCCCAAACACGCCTGGCTGAGGACAACAATACCCTCAGCTCTCCCTCATCATCATAAACCGTTTGGGCCCAGATTCCGCCGCGGCCCATTTAAATGCGTGTCTGTATTTTCTTCCTCGTCGTCTGCTAGCGGTGGTGGTGGTCGCTCCGAGAATCAAGGAGAGGAGGTTTCCGGTCTTATGGCCGATATGGGTTCCGAGAATCATAAAGGCCATGAGTGGTTTGATAGCAAATTGTACCCTGATCATCATCATGACCGTTCACAGCCGCCGCCTCCTCATCAATCGACTAAGTTGCTCACCTTGCCCACCATTCTCACCCTCGGCCGCGTCGCCGCCGTGCCTCTCCTCATCAGCACTTTCTATGTGGATAGTTGGTTGGGAAAGACTGCTACGACAAGTATATTTATCGCTGCAGCGATTACTGATTGGCTCGATGGCTATCTTGCTCGCAAGATGAGGTTAGGATCTGCTTTTGGCGCATTTCTGGATCCGGTAGCTGATAAGCTCATGGTTGCAGCCACACTGGTATTGTTGTGCTCCAGACCTCAAGATGTTGCTGCATTTGGGCAAGTTCAATGGCTTTTGGTTGTTCCTTCAATTGCCATAATAGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCATCTCAGAACACCAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCGCACAGATGATTGCGTTAACTATCCTCTTGGCCACCCGAGACAGCAGTCTTGGAGGGTCAGAGTTTGTAGTAGCTTCTGGGGTTGTTCTGCTGTATATATCAGCAGGGCTTGCTGTATGGTCTTTAGTTGTGTATATGAGCAAGATATGGAAAGTACTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

351

Amino Acids

38.01

Weight (kDa)

10.0

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	157 - 252	9.9e-21	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	252, 498
AclWI	GGATC	3 cut(s)	643, 653, 666
AcoI	YGGCCR	3 cut(s)	351, 493, 915
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	2 cut(s)	407, 1041
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	746, 768
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	5 cut(s)	209, 668, 676, 838, 959
AluI	AGCT	5 cut(s)	209, 668, 676, 838, 959
Alw21I	GWGCWC	2 cut(s)	21, 710
Alw26I	GTCTC	2 cut(s)	170, 918
AlwI	GGATC	3 cut(s)	643, 653, 666
Ama87I	CYCGRG	1 cut(s)	921
AoxI	GGCC	6 cut(s)	236, 253, 351, 379, 493, 915
ApaI	GGGCCC	1 cut(s)	240
ApeKI	GCWGC	5 cut(s)	581, 584, 686, 728, 818
ApoI	RAATTY	1 cut(s)	156
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	236, 237, 254
AsuHPI	GGTGA	3 cut(s)	103, 460, 478
AsuNHI	GCTAGC	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	921
BaeGI	GKGCMC	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	917
BamHI	GGATCC	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	21, 710
BbvCI	CCTCAGC	3 cut(s)	188, 205, 1046
BbvI	GCAGC	5 cut(s)	568, 596, 698, 715, 805
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BciT130I	CCWGG	1 cut(s)	184
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	170, 918
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	582, 801
BmcAI	AGTACT	1 cut(s)	1041
Bme1390I	CCNGG	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	921
BmgT120I	GGNCC	3 cut(s)	236, 237, 254
BmiI	GGNNCC	3 cut(s)	238, 364, 660
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	830
BmtI	GCTAGC	1 cut(s)	300
BoxI	GACNNNNGTC	1 cut(s)	930
BpmI	CTGGAG	1 cut(s)	694
Bpu10I	CCTNAGC	3 cut(s)	188, 205, 1046
BpuEI	CTTGAG	1 cut(s)	702
BsaBI	GATNNNNATC	2 cut(s)	417, 609
BsaJI	CCNNGG	2 cut(s)	250, 490
BsaWI	WCCGGW	2 cut(s)	341, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	699
Bse8I	GATNNNNATC	2 cut(s)	417, 609
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	250, 490
BseJI	GATNNNNATC	2 cut(s)	417, 609
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	4 cut(s)	179, 219, 839, 1037
BseNI	ACTGG	1 cut(s)	699
BseRI	GAGGAG	5 cut(s)	62, 94, 347, 435, 506
BseSI	GKGCMC	1 cut(s)	240
BseX3I	CGGCCG	1 cut(s)	493
BseXI	GCAGC	5 cut(s)	568, 596, 698, 715, 805
Bsh1236I	CGCG	2 cut(s)	252, 498
Bsh1285I	CGRYCG	1 cut(s)	496
BshFI	GGCC	6 cut(s)	238, 255, 353, 381, 495, 917
BsiEI	CGRYCG	1 cut(s)	496
BsiHKAI	GWGCWC	2 cut(s)	21, 710
BsiHKCI	CYCGRG	1 cut(s)	921
BsiSI	CCGG	2 cut(s)	342, 662
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	170, 918
BsnI	GGCC	6 cut(s)	238, 255, 353, 381, 495, 917
BsoBI	CYCGRG	1 cut(s)	921
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	3 cut(s)	21, 240, 710
Bsp143I	GATC	3 cut(s)	412, 635, 658
BspANI	GGCC	6 cut(s)	238, 255, 353, 381, 495, 917
BspCNI	CTCAG	4 cut(s)	180, 218, 838, 1038
BspFNI	CGCG	2 cut(s)	252, 498
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	238, 364, 660
BspMAI	CTGCAG	2 cut(s)	586, 805
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	3 cut(s)	643, 653, 666
BsrI	ACTGG	1 cut(s)	699
BssECI	CCNNGG	2 cut(s)	250, 490
BssMI	GATC	3 cut(s)	412, 635, 658
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	3 cut(s)	164, 231, 428
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstC8I	GCNNGC	3 cut(s)	298, 619, 996
BstDEI	CTNAG	5 cut(s)	188, 205, 459, 825, 1046
BstDSI	CCRYGG	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	187
BstFNI	CGCG	2 cut(s)	252, 498
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	3 cut(s)	415, 638, 661
BstMAI	GTCTC	2 cut(s)	170, 918
BstMBI	GATC	3 cut(s)	412, 635, 658
BstMCI	CGRYCG	1 cut(s)	496
BstMWI	GCNNNNNNNGC	3 cut(s)	472, 647, 995
BstNI	CCWGG	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	930
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	582, 801
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	2 cut(s)	252, 498
BstV1I	GCAGC	5 cut(s)	568, 596, 698, 715, 805
BstX2I	RGATCY	2 cut(s)	635, 658
BstYI	RGATCY	2 cut(s)	635, 658
BstZI	CGGCCG	1 cut(s)	493
BsuRI	GGCC	6 cut(s)	238, 255, 353, 381, 495, 917
BtgI	CCRYGG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	692
Cac8I	GCNNGC	3 cut(s)	298, 619, 996
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	3 cut(s)	236, 237, 254
Cfr42I	CCGCGG	1 cut(s)	253
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	406, 1040
CviAII	CATG	4 cut(s)	383, 422, 679, 796
CviQI	GTAC	2 cut(s)	406, 1040
DdeI	CTNAG	5 cut(s)	188, 205, 459, 825, 1046
DpnI	GATC	3 cut(s)	414, 637, 660
DpnII	GATC	3 cut(s)	412, 635, 658
DraI	TTTAAA	1 cut(s)	262
EaeI	YGGCCR	3 cut(s)	351, 493, 915
EagI	CGGCCG	1 cut(s)	493
EciI	GGCGGA	1 cut(s)	236
EclXI	CGGCCG	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	240
Eco52I	CGGCCG	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	921
EcoNI	CCTNNNNNAGG	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	4 cut(s)	386, 425, 682, 799
FatI	CATG	4 cut(s)	382, 421, 678, 795
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	649
GsuI	CTGGAG	1 cut(s)	694
HaeIII	GGCC	6 cut(s)	238, 255, 353, 381, 495, 917
HapII	CCGG	2 cut(s)	342, 662
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	4 cut(s)	386, 425, 682, 799
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HindIII	AAGCTT	1 cut(s)	836
HinfI	GANTC	3 cut(s)	243, 322, 370
HpaI	GTTAAC	1 cut(s)	903
HpaII	CCGG	2 cut(s)	342, 662
HphI	GGTGA	3 cut(s)	103, 460, 478
Hpy166II	GTNNAC	2 cut(s)	431, 903
Hpy188I	TCNGA	4 cut(s)	319, 367, 828, 946
Hpy188III	TCNNGA	4 cut(s)	422, 656, 711, 719
Hpy8I	GTNNAC	2 cut(s)	431, 903
Hpy99I	CGWCG	2 cut(s)	292, 503
HpyAV	CCTTC	3 cut(s)	86, 118, 774
HpyCH4III	ACNGT	3 cut(s)	164, 231, 428
HpyCH4V	TGCA	5 cut(s)	584, 686, 731, 803, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	472, 647, 995
HpyF3I	CTNAG	5 cut(s)	188, 205, 459, 825, 1046
Hsp92II	CATG	4 cut(s)	386, 425, 682, 799
HspAI	GCGC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	903
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	412, 635, 658
LmnI	GCTCC	3 cut(s)	107, 320, 713
Lsp1109I	GCAGC	5 cut(s)	568, 596, 698, 715, 805
LweI	GCATC	1 cut(s)	830
MaeI	CTAG	1 cut(s)	297
MalI	GATC	3 cut(s)	414, 637, 660
MboI	GATC	3 cut(s)	412, 635, 658
MboII	GAAGA	2 cut(s)	71, 273
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	2 cut(s)	635, 658
MhlI	GDGCHC	3 cut(s)	21, 240, 710
MlsI	TGGCCA	1 cut(s)	917
MluCI	AATT	3 cut(s)	156, 401, 768
MluNI	TGGCCA	1 cut(s)	917
Mox20I	TGGCCA	1 cut(s)	917
MscI	TGGCCA	1 cut(s)	917
MseI	TTAA	4 cut(s)	128, 140, 261, 902
MslI	CAYNNNNRTG	2 cut(s)	262, 420
Msp20I	TGGCCA	1 cut(s)	917
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	2 cut(s)	342, 662
MspR9I	CCNGG	1 cut(s)	184
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	252, 498
MwoI	GCNNNNNNNGC	3 cut(s)	472, 647, 995
NdeII	GATC	3 cut(s)	412, 635, 658
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	4 cut(s)	386, 425, 682, 799
NlaIV	GGNNCC	3 cut(s)	238, 364, 660
NmeAIII	GCCGAG	1 cut(s)	471
PagI	TCATGA	1 cut(s)	421
PfeI	GAWTC	3 cut(s)	243, 322, 370
PshAI	GACNNNNGTC	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	238, 364, 660
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	3 cut(s)	236, 237, 254
PstI	CTGCAG	2 cut(s)	586, 805
PsuI	RGATCY	2 cut(s)	635, 658
RsaI	GTAC	2 cut(s)	407, 1041
RsaNI	GTAC	2 cut(s)	406, 1040
RseI	CAYNNNNRTG	2 cut(s)	262, 420
SacII	CCGCGG	1 cut(s)	253
SaqAI	TTAA	4 cut(s)	128, 140, 261, 902
Sau3AI	GATC	3 cut(s)	412, 635, 658
Sau96I	GGNCC	3 cut(s)	236, 237, 254
ScaI	AGTACT	1 cut(s)	1041
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	3 cut(s)	21, 240, 710
SfaNI	GCATC	1 cut(s)	830
SfcI	CTRYAG	2 cut(s)	582, 801
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SmiI	ATTTAAAT	1 cut(s)	262
SmiMI	CAYNNNNRTG	2 cut(s)	262, 420
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
Sse9I	AATT	3 cut(s)	156, 401, 768
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	182
SwaI	ATTTAAAT	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	164, 231, 428
TaqI	TCGA	2 cut(s)	455, 603
TasI	AATT	3 cut(s)	156, 401, 768
TatI	WGTACW	1 cut(s)	1039
TauI	GCSGC	7 cut(s)	252, 255, 439, 442, 498, 506, 887
TfiI	GAWTC	3 cut(s)	243, 322, 370
Tru1I	TTAA	4 cut(s)	128, 140, 261, 902
Tru9I	TTAA	4 cut(s)	128, 140, 261, 902
TscAI	CASTG	1 cut(s)	699
TseI	GCWGC	5 cut(s)	581, 584, 686, 728, 818
TspRI	CASTG	1 cut(s)	699
XagI	CCTNNNNNAGG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	156
XspI	CTAG	1 cut(s)	297
ZrmI	AGTACT	1 cut(s)	1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.