Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Reverse (-)

11940096 .. 11943681

Gene Structure 3586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCAGCCCTTGTGCTCAAAATGACCACAGCAACCTCTCCTATAAAACCCCACCCCCAAAATCTCCTCCTCCCCAATTGGGTCCGCCCTCGTCCTCGCCCTCGTTCTCTCTCTCGCTCCTCCTTCACAGCCACCCACCACCCAATAACCCTCCAAACCCAAAACCAAAATCAGAATCTCAAACACAAGTGGTGGAGGATAACACCACCACCCTCACCCTCATCAAGTCTCCTGCTTGGGCCCAGATTCCGCGGCCCATATAAATGCCCGGCCATTTCTCCATCTTCTTCATCTGCTAGCGGCGGTCGCTCCGAGAATCAAGGAGAGGGTTTTATGGGCGATATGGGTTCCCAGAATCATAAAGGCCATGAGTGGTTCGACAGCAAATTGTACGCTGATAAAGACGGATTGCTTTCCCCTAATCATGATGCCCGATCAACGCCGCCGCCTCATCAATCGCCTAAATTGCTCACCTTGCCCACCATTCTCACCCTCGGCCGCGTCGCCGCCGTGCCCGTTCTCATCAGCACTTTCTATGTGGATAGTTGGTTGGGAAAAACTGCTACAACAAGTATATTCATCGCTGCAGCAATTACTGATTGGCTTGATGGCTATCTTGCTCGCAAGATGAGGTTAGGATCAGCTTTTGGTGCATTTCTGGATCCAGTCGCTGATAAGCTCATGGTTGCTGCTACACTGGTTTTATTGTGCTCCAGACCTCAAGATGTTGCTGCATTTGGGCAAGTGCCATGGCTATTGGTTGTTCCTTCAATTGCCATAATAGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCCAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGAAAGTGGAAAACTGCCACACAGATGATCGCACTAACTATCCTCTTGGCCACCCGAGATAGCAGTCTTGGAGGGCCAGAGTTTGTAGTAGCTTCTGGGGTTGTTCTGCTTTATATATCAGCAGGGCTTGCTGTATGGTCTTTAGCTGTGTATATGAGCAAGATATGGAAAGTACTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

352

Amino Acids

38.17

Weight (kDa)

10.11

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	158 - 336	9.1e-30	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	252, 501
AciI	CCGC	9 cut(s)	85, 250, 252, 300, 303, 443, 446, 499, 507
AclWI	GGATC	3 cut(s)	646, 656, 669
AcoI	YGGCCR	3 cut(s)	270, 496, 918
AfaI	GTAC	2 cut(s)	392, 1044
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	771
AluBI	AGCT	5 cut(s)	644, 679, 841, 962, 1016
AluI	AGCT	5 cut(s)	644, 679, 841, 962, 1016
Alw21I	GWGCWC	2 cut(s)	18, 713
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	646, 656, 669
AlwNI	CAGNNNCTG	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	924
AoxI	GGCC	7 cut(s)	239, 253, 270, 364, 496, 918, 944
ApaI	GGGCCC	1 cut(s)	243
ApeKI	GCWGC	5 cut(s)	584, 587, 689, 731, 821
AspS9I	GGNCC	5 cut(s)	82, 239, 240, 254, 944
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	3 cut(s)	207, 463, 481
AsuNHI	GCTAGC	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	924
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	2 cut(s)	243, 516
BalI	TGGCCA	1 cut(s)	920
BamHI	GGATCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	18, 713
BbvCI	CCTCAGC	1 cut(s)	1049
BbvI	GCAGC	5 cut(s)	571, 599, 676, 718, 808
BccI	CCATC	2 cut(s)	289, 602
BceAI	ACGGC	1 cut(s)	494
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	585, 804
BmcAI	AGTACT	1 cut(s)	1044
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	924
BmgT120I	GGNCC	5 cut(s)	82, 239, 240, 254, 944
BmiI	GGNNCC	4 cut(s)	83, 241, 349, 663
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	418
BmtI	GCTAGC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	697
Bpu10I	CCTNAGC	1 cut(s)	1049
BpuEI	CTTGAG	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	3 cut(s)	250, 493, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	665, 702
Bse8I	GATNNNNATC	1 cut(s)	612
BseDI	CCNNGG	3 cut(s)	250, 493, 749
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	842, 1040
BseNI	ACTGG	2 cut(s)	665, 702
BseRI	GAGGAG	3 cut(s)	56, 59, 109
BseSI	GKGCMC	2 cut(s)	243, 516
BseX3I	CGGCCG	1 cut(s)	496
BseXI	GCAGC	5 cut(s)	571, 599, 676, 718, 808
Bsh1236I	CGCG	2 cut(s)	252, 501
Bsh1285I	CGRYCG	2 cut(s)	307, 499
BshFI	GGCC	7 cut(s)	241, 255, 272, 366, 498, 920, 946
BsiEI	CGRYCG	2 cut(s)	307, 499
BsiHKAI	GWGCWC	2 cut(s)	18, 713
BsiHKCI	CYCGRG	1 cut(s)	924
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	7 cut(s)	241, 255, 272, 366, 498, 920, 946
BsoBI	CYCGRG	1 cut(s)	924
Bsp120I	GGGCCC	1 cut(s)	239
Bsp1286I	GDGCHC	4 cut(s)	18, 243, 516, 713
Bsp143I	GATC	4 cut(s)	434, 638, 661, 897
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	9 cut(s)	85, 250, 252, 300, 303, 443, 446, 499, 507
BspANI	GGCC	7 cut(s)	241, 255, 272, 366, 498, 920, 946
BspCNI	CTCAG	2 cut(s)	841, 1041
BspFNI	CGCG	2 cut(s)	252, 501
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	4 cut(s)	83, 241, 349, 663
BspMAI	CTGCAG	2 cut(s)	589, 808
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	3 cut(s)	646, 656, 669
BsrI	ACTGG	2 cut(s)	665, 702
BssECI	CCNNGG	3 cut(s)	250, 493, 749
BssMI	GATC	4 cut(s)	434, 638, 661, 897
BssT1I	CCWWGG	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstC8I	GCNNGC	3 cut(s)	298, 622, 999
BstDEI	CTNAG	2 cut(s)	828, 1049
BstDSI	CCRYGG	2 cut(s)	250, 749
BstFNI	CGCG	2 cut(s)	252, 501
BstKTI	GATC	4 cut(s)	437, 641, 664, 900
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	4 cut(s)	434, 638, 661, 897
BstMCI	CGRYCG	2 cut(s)	307, 499
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 466, 475, 650, 998
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	2 cut(s)	585, 804
BstSLI	GKGCMC	2 cut(s)	243, 516
BstUI	CGCG	2 cut(s)	252, 501
BstV1I	GCAGC	5 cut(s)	571, 599, 676, 718, 808
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BstZI	CGGCCG	1 cut(s)	496
BsuRI	GGCC	7 cut(s)	241, 255, 272, 366, 498, 920, 946
BtgI	CCRYGG	2 cut(s)	250, 749
BtgZI	GCGATG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	695
Cac8I	GCNNGC	3 cut(s)	298, 622, 999
CaiI	CAGNNNCTG	1 cut(s)	671
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	5 cut(s)	82, 239, 240, 254, 944
Cfr42I	CCGCGG	1 cut(s)	253
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	391, 1043
CviAII	CATG	5 cut(s)	368, 425, 682, 750, 799
CviQI	GTAC	2 cut(s)	391, 1043
DdeI	CTNAG	2 cut(s)	828, 1049
DpnI	GATC	4 cut(s)	436, 640, 663, 899
DpnII	GATC	4 cut(s)	434, 638, 661, 897
EaeI	YGGCCR	3 cut(s)	270, 496, 918
EagI	CGGCCG	1 cut(s)	496
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	924
EcoT14I	CCWWGG	1 cut(s)	749
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	5 cut(s)	371, 428, 685, 753, 802
FatI	CATG	5 cut(s)	367, 424, 681, 749, 798
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	697
HaeIII	GGCC	7 cut(s)	241, 255, 272, 366, 498, 920, 946
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	490
Hin1II	CATG	5 cut(s)	371, 428, 685, 753, 802
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	4 cut(s)	175, 246, 316, 355
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	207, 463, 481
Hpy188I	TCNGA	3 cut(s)	174, 313, 831
Hpy188III	TCNNGA	4 cut(s)	425, 659, 714, 722
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	2 cut(s)	133, 777
HpyCH4V	TGCA	4 cut(s)	587, 653, 734, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 466, 475, 650, 998
HpyF3I	CTNAG	2 cut(s)	828, 1049
Hsp92II	CATG	5 cut(s)	371, 428, 685, 753, 802
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	434, 638, 661, 897
LmnI	GCTCC	3 cut(s)	122, 314, 716
Lsp1109I	GCAGC	5 cut(s)	571, 599, 676, 718, 808
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	297
MalI	GATC	4 cut(s)	436, 640, 663, 899
MboI	GATC	4 cut(s)	434, 638, 661, 897
MboII	GAAGA	2 cut(s)	276, 279
MfeI	CAATTG	2 cut(s)	76, 771
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	4 cut(s)	18, 243, 516, 713
MlsI	TGGCCA	1 cut(s)	920
MluCI	AATT	5 cut(s)	76, 386, 464, 591, 771
MluNI	TGGCCA	1 cut(s)	920
Mox20I	TGGCCA	1 cut(s)	920
MscI	TGGCCA	1 cut(s)	920
MslI	CAYNNNNRTG	2 cut(s)	262, 893
Msp20I	TGGCCA	1 cut(s)	920
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	269
MunI	CAATTG	2 cut(s)	76, 771
MvnI	CGCG	2 cut(s)	252, 501
MwoI	GCNNNNNNNGC	5 cut(s)	306, 466, 475, 650, 998
NciI	CCSGG	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	4 cut(s)	434, 638, 661, 897
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	5 cut(s)	371, 428, 685, 753, 802
NlaIV	GGNNCC	4 cut(s)	83, 241, 349, 663
NmeAIII	GCCGAG	1 cut(s)	474
PagI	TCATGA	1 cut(s)	424
PfeI	GAWTC	4 cut(s)	175, 246, 316, 355
PspN4I	GGNNCC	4 cut(s)	83, 241, 349, 663
PspOMI	GGGCCC	1 cut(s)	239
PspPI	GGNCC	5 cut(s)	82, 239, 240, 254, 944
PstI	CTGCAG	2 cut(s)	589, 808
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	2 cut(s)	392, 1044
RsaNI	GTAC	2 cut(s)	391, 1043
RseI	CAYNNNNRTG	2 cut(s)	262, 893
SacII	CCGCGG	1 cut(s)	253
Sau3AI	GATC	4 cut(s)	434, 638, 661, 897
Sau96I	GGNCC	5 cut(s)	82, 239, 240, 254, 944
ScaI	AGTACT	1 cut(s)	1044
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	4 cut(s)	18, 243, 516, 713
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	585, 804
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	262, 893
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
Sse9I	AATT	5 cut(s)	76, 386, 464, 591, 771
SsiI	CCGC	9 cut(s)	85, 250, 252, 300, 303, 443, 446, 499, 507
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	749
TaqI	TCGA	1 cut(s)	378
TasI	AATT	5 cut(s)	76, 386, 464, 591, 771
TatI	WGTACW	1 cut(s)	1042
TauI	GCSGC	6 cut(s)	255, 303, 445, 448, 501, 509
TfiI	GAWTC	4 cut(s)	175, 246, 316, 355
TscAI	CASTG	1 cut(s)	702
TseI	GCWGC	5 cut(s)	584, 587, 689, 731, 821
TspDTI	ATGAA	2 cut(s)	279, 568
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	1 cut(s)	297
ZrmI	AGTACT	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.