Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Forward (+)

24959724 .. 24963084

Gene Structure 3361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G221600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTCAGCCCTGGTGCTCAAAATGACCACAGCAGCCTCGTCTATATACCCCAAGAAGAAGCCCTACCACCAAAAGCTCTCCAATTGGGTTTGGGTCTCCCCACAACGCCCTACCTCTTCCACCACCACCACTCCCTCTCCCTCTTCCCCTCCAGCCCTAAATACCCCCATTCAGGCATTTACGCAAACACATAATAAATACGGGTGCAGGATAACCCCATGCGCACCCCTAGCGCACCCCAACCACCCTCACCCTCCTCACATTCTTCTTCAAAACCTAGGGCCCAGATTTCTTAAATGCCTCTCCGTCTCCTCTCGCAGCAGCAGCAGCTCTAGTGGGGGTTTCTCCGAGGACAAAGGAGAGTCTTCTGGGTCTGGGTCTGGCTCTGAGCCTGGCCCTGCCGCTGGTCTTATGGCCGATATGGGTTCGGACAATAAAGGCACTGATTGGTACGAGAGCCAATTGTACCAAAACCACGACGAATTGTTATCTCCTCTGAAACAGCGCCAACAACAACAACAACAGCATTCTTCCTCCAAATTGCTCACCTTGCCCACCATTCTAACGCTCGGCCGCGTTGCCTCTGTGCCGATTCTCATTAGCACTTTCTACGTGGATAGTCGGTGGGGAACAACTGCTACAACAAGTATTTTCATTGCTGCAGCAATTACTGATTGGCTTGATGGGTACATTGCTCGAAAGATGAGGTTGGGATCTGCTTTTGGTGCTTTTTTGGATCCCGTAGCTGACAAGCTCATGGTTGCAGCCACACTGGTTTTGTTGTGTTCCAGGCCTTTGGATGTTGCTATGTTTGGGCAAGTTCCATGGTTGCTGGTTGTTCCTTCAATTGCCATAATCGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACAGTAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCACACAGATGATCGCGCTAACTGTCCTCTTGGCCACCCGAGACAGCAGTCTTGGAAGACCAGAGGCTCTAGTAGCTTCGGGTGTTGCTTTGCTTTATATTTCAGCAGGGCTTGCTGTATGGTCTTTAGTTGTGTATATGAGCAAGATATGGAAAGTACTGCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

377

Amino Acids

40.56

Weight (kDa)

9.58

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	223
AccII	CGCG	2 cut(s)	576, 977
AciI	CCGC	2 cut(s)	402, 574
AclWI	GGATC	3 cut(s)	721, 731, 744
AcoI	YGGCCR	3 cut(s)	414, 571, 993
AfaI	GTAC	4 cut(s)	452, 467, 689, 1119
AfiI	CCNNNNNNNGG	2 cut(s)	172, 404
AgsI	TTSAA	2 cut(s)	272, 846
AjnI	CCWGG	3 cut(s)	9, 391, 788
AluBI	AGCT	6 cut(s)	76, 330, 746, 754, 916, 1037
AluI	AGCT	6 cut(s)	76, 330, 746, 754, 916, 1037
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	3 cut(s)	100, 313, 996
AlwI	GGATC	3 cut(s)	721, 731, 744
Ama87I	CYCGRG	1 cut(s)	999
AoxI	GGCC	6 cut(s)	281, 394, 414, 571, 791, 993
ApaI	GGGCCC	1 cut(s)	285
ApeKI	GCWGC	9 cut(s)	32, 318, 321, 324, 327, 659, 662, 764, 896
AspA2I	CCTAGG	1 cut(s)	277
AspLEI	GCGC	4 cut(s)	224, 235, 507, 979
AspS9I	GGNCC	3 cut(s)	281, 282, 395
AsuHPI	GGTGA	2 cut(s)	242, 538
AvaI	CYCGRG	1 cut(s)	999
AvrII	CCTAGG	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	995
BamHI	GGATCC	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
BbsI	GAAGAC	2 cut(s)	357, 1024
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	9 cut(s)	44, 330, 333, 336, 339, 646, 674, 776, 883
BccI	CCATC	1 cut(s)	677
BciT130I	CCWGG	3 cut(s)	11, 393, 790
BcoDI	GTCTC	3 cut(s)	100, 313, 996
BfaI	CTAG	4 cut(s)	230, 278, 333, 1031
BfmI	CTRYAG	2 cut(s)	660, 879
BfoI	RGCGCY	1 cut(s)	508
BlnI	CCTAGG	1 cut(s)	277
BmcAI	AGTACT	1 cut(s)	1119
Bme1390I	CCNGG	3 cut(s)	11, 393, 790
BmeT110I	CYCGRG	1 cut(s)	999
BmgT120I	GGNCC	3 cut(s)	281, 282, 395
BmiI	GGNNCC	2 cut(s)	283, 738
BmrFI	CCNGG	3 cut(s)	11, 393, 790
BoxI	GACNNNNGTC	1 cut(s)	1008
BpiI	GAAGAC	2 cut(s)	357, 1024
BpmI	CTGGAG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	613
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	4 cut(s)	9, 277, 348, 824
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 121, 145, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 404
Bse1I	ACTGG	1 cut(s)	777
Bse3DI	GCAATG	2 cut(s)	654, 690
BseBI	CCWGG	3 cut(s)	11, 393, 790
BseDI	CCNNGG	4 cut(s)	9, 277, 348, 824
BseGI	GGATG	1 cut(s)	805
BseLI	CCNNNNNNNGG	2 cut(s)	172, 404
BseMI	GCAATG	2 cut(s)	654, 690
BseMII	CTCAG	2 cut(s)	378, 917
BseNI	ACTGG	1 cut(s)	777
BseRI	GAGGAG	3 cut(s)	246, 301, 483
BseSI	GKGCMC	1 cut(s)	285
BseX3I	CGGCCG	1 cut(s)	571
BseXI	GCAGC	9 cut(s)	44, 330, 333, 336, 339, 646, 674, 776, 883
BsgI	GTGCAG	1 cut(s)	226
Bsh1236I	CGCG	2 cut(s)	576, 977
Bsh1285I	CGRYCG	1 cut(s)	574
BshFI	GGCC	6 cut(s)	283, 396, 416, 573, 793, 995
BsiEI	CGRYCG	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	999
BslI	CCNNNNNNNGG	2 cut(s)	172, 404
BsmAI	GTCTC	3 cut(s)	100, 313, 996
BsmBI	CGTCTC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	6 cut(s)	283, 396, 416, 573, 793, 995
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	999
Bsp120I	GGGCCC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	18, 285
Bsp143I	GATC	3 cut(s)	713, 736, 972
Bsp19I	CCATGG	1 cut(s)	824
BspACI	CCGC	2 cut(s)	402, 574
BspANI	GGCC	6 cut(s)	283, 396, 416, 573, 793, 995
BspCNI	CTCAG	2 cut(s)	379, 916
BspFNI	CGCG	2 cut(s)	576, 977
BspLI	GGNNCC	2 cut(s)	283, 738
BspMAI	CTGCAG	2 cut(s)	664, 883
BspPI	GGATC	3 cut(s)	721, 731, 744
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	2 cut(s)	654, 690
BsrI	ACTGG	1 cut(s)	777
BssECI	CCNNGG	4 cut(s)	9, 277, 348, 824
BssMI	GATC	3 cut(s)	713, 736, 972
BssT1I	CCWWGG	2 cut(s)	277, 824
Bst2UI	CCWGG	3 cut(s)	11, 393, 790
Bst4CI	ACNGT	2 cut(s)	911, 985
Bst6I	CTCTTC	2 cut(s)	121, 148
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstBAI	YACGTR	1 cut(s)	613
BstC8I	GCNNGC	1 cut(s)	1074
BstDEI	CTNAG	2 cut(s)	387, 903
BstDSI	CCRYGG	1 cut(s)	824
BstF5I	GGATG	1 cut(s)	805
BstFNI	CGCG	2 cut(s)	576, 977
BstH2I	RGCGCY	1 cut(s)	508
BstHHI	GCGC	4 cut(s)	224, 235, 507, 979
BstKTI	GATC	3 cut(s)	716, 739, 975
BstMAI	GTCTC	3 cut(s)	100, 313, 996
BstMBI	GATC	3 cut(s)	713, 736, 972
BstMCI	CGRYCG	1 cut(s)	574
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 324, 327, 550, 725, 1034, 1073
BstNI	CCWGG	3 cut(s)	11, 393, 790
BstPAI	GACNNNNGTC	1 cut(s)	1008
BstSCI	CCNGG	3 cut(s)	9, 391, 788
BstSFI	CTRYAG	2 cut(s)	660, 879
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	2 cut(s)	576, 977
BstV1I	GCAGC	9 cut(s)	44, 330, 333, 336, 339, 646, 674, 776, 883
BstV2I	GAAGAC	2 cut(s)	357, 1024
BstX2I	RGATCY	2 cut(s)	713, 736
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstYI	RGATCY	2 cut(s)	713, 736
BstZI	CGGCCG	1 cut(s)	571
BsuRI	GGCC	6 cut(s)	283, 396, 416, 573, 793, 995
BtgI	CCRYGG	1 cut(s)	824
BtsCI	GGATG	1 cut(s)	805
BtsIMutI	CAGTG	2 cut(s)	441, 770
Cac8I	GCNNGC	1 cut(s)	1074
CfoI	GCGC	4 cut(s)	224, 235, 507, 979
Cfr13I	GGNCC	3 cut(s)	281, 282, 395
Csp6I	GTAC	4 cut(s)	451, 466, 688, 1118
CviAII	CATG	4 cut(s)	219, 757, 825, 874
CviQI	GTAC	4 cut(s)	451, 466, 688, 1118
DdeI	CTNAG	2 cut(s)	387, 903
DpnI	GATC	3 cut(s)	715, 738, 974
DpnII	GATC	3 cut(s)	713, 736, 972
EaeI	YGGCCR	3 cut(s)	414, 571, 993
EagI	CGGCCG	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	121, 148
EarI	CTCTTC	2 cut(s)	121, 148
EclXI	CGGCCG	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	277, 824
Eco147I	AGGCCT	1 cut(s)	793
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	100
Eco52I	CGGCCG	1 cut(s)	571
Eco88I	CYCGRG	1 cut(s)	999
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	3 cut(s)	9, 391, 788
EcoT14I	CCWWGG	2 cut(s)	277, 824
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	277, 824
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	4 cut(s)	222, 760, 828, 877
FatI	CATG	4 cut(s)	218, 756, 824, 873
FokI	GGATG	1 cut(s)	812
FriOI	GRGCYC	1 cut(s)	285
FspAI	RTGCGCAY	1 cut(s)	223
FspBI	CTAG	4 cut(s)	230, 278, 333, 1031
FspI	TGCGCA	1 cut(s)	223
GlaI	GCGC	4 cut(s)	223, 234, 506, 978
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	508
HaeIII	GGCC	6 cut(s)	283, 396, 416, 573, 793, 995
HhaI	GCGC	4 cut(s)	224, 235, 507, 979
Hin1II	CATG	4 cut(s)	222, 760, 828, 877
Hin6I	GCGC	4 cut(s)	222, 233, 505, 977
HinP1I	GCGC	4 cut(s)	222, 233, 505, 977
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	2 cut(s)	362, 592
HphI	GGTGA	2 cut(s)	242, 538
Hpy188I	TCNGA	5 cut(s)	349, 388, 430, 498, 906
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	852
HpyCH4III	ACNGT	2 cut(s)	911, 985
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	4 cut(s)	207, 662, 764, 881
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 324, 327, 550, 725, 1034, 1073
HpyF3I	CTNAG	2 cut(s)	387, 903
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	4 cut(s)	222, 760, 828, 877
HspAI	GCGC	4 cut(s)	222, 233, 505, 977
Kzo9I	GATC	3 cut(s)	713, 736, 972
Lsp1109I	GCAGC	9 cut(s)	44, 330, 333, 336, 339, 646, 674, 776, 883
MaeI	CTAG	4 cut(s)	230, 278, 333, 1031
MaeII	ACGT	1 cut(s)	612
MalI	GATC	3 cut(s)	715, 738, 974
MboI	GATC	3 cut(s)	713, 736, 972
MboII	GAAGA	8 cut(s)	67, 108, 135, 257, 260, 357, 522, 1029
MfeI	CAATTG	3 cut(s)	82, 461, 846
MflI	RGATCY	2 cut(s)	713, 736
MhlI	GDGCHC	2 cut(s)	18, 285
MlsI	TGGCCA	1 cut(s)	995
MluCI	AATT	6 cut(s)	82, 461, 482, 539, 666, 846
MluNI	TGGCCA	1 cut(s)	995
MlyI	GAGTC	1 cut(s)	371
Mox20I	TGGCCA	1 cut(s)	995
MscI	TGGCCA	1 cut(s)	995
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	968
Msp20I	TGGCCA	1 cut(s)	995
MspA1I	CMGCKG	1 cut(s)	404
MspR9I	CCNGG	3 cut(s)	11, 393, 790
MunI	CAATTG	3 cut(s)	82, 461, 846
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	3 cut(s)	11, 393, 790
MvnI	CGCG	2 cut(s)	576, 977
MwoI	GCNNNNNNNGC	7 cut(s)	230, 324, 327, 550, 725, 1034, 1073
NcoI	CCATGG	1 cut(s)	824
NdeII	GATC	3 cut(s)	713, 736, 972
NlaIII	CATG	4 cut(s)	222, 760, 828, 877
NlaIV	GGNNCC	2 cut(s)	283, 738
NmeAIII	GCCGAG	1 cut(s)	549
NsbI	TGCGCA	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	793
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	592
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	613
PshAI	GACNNNNGTC	1 cut(s)	1008
Psp6I	CCWGG	3 cut(s)	9, 391, 788
PspGI	CCWGG	3 cut(s)	9, 391, 788
PspN4I	GGNNCC	2 cut(s)	283, 738
PspOMI	GGGCCC	1 cut(s)	281
PspPI	GGNCC	3 cut(s)	281, 282, 395
PsrI	GAACNNNNNNTAC	2 cut(s)	622, 654
PstI	CTGCAG	2 cut(s)	664, 883
PsuI	RGATCY	2 cut(s)	713, 736
RsaI	GTAC	4 cut(s)	452, 467, 689, 1119
RsaNI	GTAC	4 cut(s)	451, 466, 688, 1118
RseI	CAYNNNNRTG	1 cut(s)	968
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	713, 736, 972
Sau96I	GGNCC	3 cut(s)	281, 282, 395
ScaI	AGTACT	1 cut(s)	1119
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	3 cut(s)	11, 393, 790
SduI	GDGCHC	2 cut(s)	18, 285
SfcI	CTRYAG	2 cut(s)	660, 879
SmiMI	CAYNNNNRTG	1 cut(s)	968
Sse9I	AATT	6 cut(s)	82, 461, 482, 539, 666, 846
SseBI	AGGCCT	1 cut(s)	793
SsiI	CCGC	2 cut(s)	402, 574
SspMI	CTAG	4 cut(s)	230, 278, 333, 1031
StuI	AGGCCT	1 cut(s)	793
StyD4I	CCNGG	3 cut(s)	9, 391, 788
StyI	CCWWGG	2 cut(s)	277, 824
TaaI	ACNGT	2 cut(s)	911, 985
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	1 cut(s)	697
TasI	AATT	6 cut(s)	82, 461, 482, 539, 666, 846
TatI	WGTACW	1 cut(s)	1117
TauI	GCSGC	2 cut(s)	404, 576
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	448, 777
TseI	GCWGC	9 cut(s)	32, 318, 321, 324, 327, 659, 662, 764, 896
TspDTI	ATGAA	1 cut(s)	643
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	448, 777
XmaJI	CCTAGG	1 cut(s)	277
XspI	CTAG	4 cut(s)	230, 278, 333, 1031
ZrmI	AGTACT	1 cut(s)	1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.