Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Reverse (-)

12143630 .. 12146416

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTCAGCCCTTGTGCTCAAAATGACCACAGCAACCTCTCCTATAAAACCCCACCCCCAAAATCTCCTCCTCCCCAATTGGGTCCGCCCTCGCCCTCCTTCTCGTTCTCTCTCTCCCTCCTCCTTCACAACCACCCACCACCCAACAACCCTCCAAACCCAAAACCAAAATCAGAATCTCAAATACAAGTGGTGGAGGATAACACCACCACCACCCCCGTCCTCAAGTCTCCTGCTTGGGCCCAGATTCCGCGGCCCACATAAATGCCTGGCCATTTCTCCATCTTCTTCATCTGCTAGCGGCGGTCGCTCCGAGAATCAAGGAGAGGGTTTTATGGCCGATATGGGTTCCCAGAATCATAAAGGCCATGAGTGGTTTGACAGCAAATTGTACGCTGATAAAGACGGATTGCTTTCCCTAATCACGATGCCCAATCAACGCCGCCTCACCAATCGCCTAAATTGCTCACCTTGCCCACCATTCTCACCCTCGGCCGTGTCGCCGCCGTGCCAGTTCTCATCAGCAGTATCTTTCTATGTGGATAGTTGGTTGGGAAAAACTGCTACAACAAGTATATTCATCGCTGCAGCGATTACTGACTGGCTTGATGGCTATCTTGCTCGCAAGATGAGGTTAGGATCTGCGTTTGGTGCATTTCTGGATCCAGTCGCTGATAAGCTCATGGTTGCCGCTACACTGGTTTTATTGTGCTCCAGACCTCAAGATGTTGCTGCATTTGGGCAAGTGCCATGGCTATTGGTTGTTCCTTCAATTGCCATAATAGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCCAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGAAAGTGGAAAACAGCCACACAGATGATTGCACTAACTATCCTCTTGGCCACCCGAGATAGCAGTCTTGGAGGGCCAGAGTTTGTCGTAGCTTCTGGGGTTGTTCTGCTTTATATATCAGCAGGGCTTGCTGTATGGTCTTTAGCTGTGTATATGAGCAAGATATGGAAGGTACTGCTGAGAACTACTTGTCAGTGCTCTGTACATGAACCCGTTGATGACCGTTATCGCACATCGGAGCAGCATTTTGCTGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

376

Amino Acids

41.09

Weight (kDa)

9.51

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	187 - 336	2.1e-25	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	252
AciI	CCGC	8 cut(s)	85, 250, 252, 300, 303, 442, 503, 690
AclWI	GGATC	3 cut(s)	646, 656, 669
AcoI	YGGCCR	4 cut(s)	270, 336, 492, 918
AfaI	GTAC	3 cut(s)	392, 1044, 1074
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	771
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	4 cut(s)	679, 841, 962, 1016
AluI	AGCT	4 cut(s)	679, 841, 962, 1016
Alw21I	GWGCWC	3 cut(s)	18, 713, 1070
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	646, 656, 669
AlwNI	CAGNNNCTG	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	924
AoxI	GGCC	8 cut(s)	239, 253, 270, 336, 364, 492, 918, 944
ApaI	GGGCCC	1 cut(s)	243
ApeKI	GCWGC	5 cut(s)	584, 587, 731, 821, 1111
AspS9I	GGNCC	5 cut(s)	82, 239, 240, 254, 944
AsuHPI	GGTGA	3 cut(s)	439, 459, 477
AsuNHI	GCTAGC	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	924
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	2 cut(s)	272, 920
BamHI	GGATCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	3 cut(s)	18, 713, 1070
BbvI	GCAGC	5 cut(s)	571, 599, 718, 808, 1123
BccI	CCATC	2 cut(s)	289, 602
BceAI	ACGGC	2 cut(s)	479, 490
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	585, 804
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	924
BmgT120I	GGNCC	5 cut(s)	82, 239, 240, 254, 944
BmiI	GGNNCC	4 cut(s)	83, 241, 349, 663
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	417
BmtI	GCTAGC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	697
BpuEI	CTTGAG	2 cut(s)	208, 705
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	3 cut(s)	250, 489, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	4 cut(s)	511, 605, 665, 702
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	250, 489, 749
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	842, 1040
BseNI	ACTGG	4 cut(s)	511, 605, 665, 702
BseRI	GAGGAG	3 cut(s)	56, 59, 109
BseSI	GKGCMC	1 cut(s)	243
BseX3I	CGGCCG	1 cut(s)	492
BseXI	GCAGC	5 cut(s)	571, 599, 718, 808, 1123
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	2 cut(s)	307, 495
BshFI	GGCC	8 cut(s)	241, 255, 272, 338, 366, 494, 920, 946
BsiEI	CGRYCG	2 cut(s)	307, 495
BsiHKAI	GWGCWC	3 cut(s)	18, 713, 1070
BsiHKCI	CYCGRG	1 cut(s)	924
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	8 cut(s)	241, 255, 272, 338, 366, 494, 920, 946
BsoBI	CYCGRG	1 cut(s)	924
Bsp120I	GGGCCC	1 cut(s)	239
Bsp1286I	GDGCHC	4 cut(s)	18, 243, 713, 1070
Bsp1407I	TGTACA	1 cut(s)	1072
Bsp143I	GATC	2 cut(s)	638, 661
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	8 cut(s)	85, 250, 252, 300, 303, 442, 503, 690
BspANI	GGCC	8 cut(s)	241, 255, 272, 338, 366, 494, 920, 946
BspCNI	CTCAG	2 cut(s)	841, 1041
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	83, 241, 349, 663
BspMAI	CTGCAG	2 cut(s)	589, 808
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	3 cut(s)	646, 656, 669
BsrGI	TGTACA	1 cut(s)	1072
BsrI	ACTGG	4 cut(s)	511, 605, 665, 702
BssECI	CCNNGG	3 cut(s)	250, 489, 749
BssMI	GATC	2 cut(s)	638, 661
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	1094
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstAUI	TGTACA	1 cut(s)	1072
BstC8I	GCNNGC	3 cut(s)	298, 622, 999
BstDEI	CTNAG	2 cut(s)	828, 1049
BstDSI	CCRYGG	2 cut(s)	250, 749
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	641, 664
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	638, 661
BstMCI	CGRYCG	2 cut(s)	307, 495
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 462, 471, 650, 998
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	2 cut(s)	585, 804
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	5 cut(s)	571, 599, 718, 808, 1123
BstX2I	RGATCY	2 cut(s)	638, 661
BstYI	RGATCY	2 cut(s)	638, 661
BstZI	CGGCCG	1 cut(s)	492
BsuRI	GGCC	8 cut(s)	241, 255, 272, 338, 366, 494, 920, 946
BtgI	CCRYGG	2 cut(s)	250, 749
BtgZI	GCGATG	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	695, 1070
Cac8I	GCNNGC	3 cut(s)	298, 622, 999
CaiI	CAGNNNCTG	1 cut(s)	671
Cfr13I	GGNCC	5 cut(s)	82, 239, 240, 254, 944
Cfr42I	CCGCGG	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	391, 1043, 1073
CviAII	CATG	5 cut(s)	368, 682, 750, 799, 1076
CviQI	GTAC	3 cut(s)	391, 1043, 1073
DdeI	CTNAG	2 cut(s)	828, 1049
DpnI	GATC	2 cut(s)	640, 663
DpnII	GATC	2 cut(s)	638, 661
EaeI	YGGCCR	4 cut(s)	270, 336, 492, 918
EagI	CGGCCG	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	924
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	749
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	5 cut(s)	371, 685, 753, 802, 1079
FatI	CATG	5 cut(s)	367, 681, 749, 798, 1075
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	697
HaeIII	GGCC	8 cut(s)	241, 255, 272, 338, 366, 494, 920, 946
Hin1II	CATG	5 cut(s)	371, 685, 753, 802, 1079
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	4 cut(s)	175, 246, 316, 355
HphI	GGTGA	3 cut(s)	439, 459, 477
Hpy188I	TCNGA	4 cut(s)	174, 313, 831, 1108
Hpy188III	TCNNGA	4 cut(s)	424, 659, 714, 722
HpyAV	CCTTC	4 cut(s)	108, 133, 777, 1033
HpyCH4III	ACNGT	1 cut(s)	1094
HpyCH4V	TGCA	5 cut(s)	587, 653, 734, 806, 902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 462, 471, 650, 998
HpyF3I	CTNAG	2 cut(s)	828, 1049
Hsp92II	CATG	5 cut(s)	371, 685, 753, 802, 1079
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	638, 661
LmnI	GCTCC	3 cut(s)	314, 716, 1108
Lsp1109I	GCAGC	5 cut(s)	571, 599, 718, 808, 1123
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	297
MalI	GATC	2 cut(s)	640, 663
MboI	GATC	2 cut(s)	638, 661
MboII	GAAGA	2 cut(s)	276, 279
MfeI	CAATTG	2 cut(s)	76, 771
MflI	RGATCY	2 cut(s)	638, 661
MhlI	GDGCHC	4 cut(s)	18, 243, 713, 1070
MlsI	TGGCCA	2 cut(s)	272, 920
MluCI	AATT	4 cut(s)	76, 386, 460, 771
MluNI	TGGCCA	2 cut(s)	272, 920
Mox20I	TGGCCA	2 cut(s)	272, 920
MscI	TGGCCA	2 cut(s)	272, 920
MslI	CAYNNNNRTG	2 cut(s)	262, 893
Msp20I	TGGCCA	2 cut(s)	272, 920
MspA1I	CMGCKG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	269
MunI	CAATTG	2 cut(s)	76, 771
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	5 cut(s)	306, 462, 471, 650, 998
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	2 cut(s)	638, 661
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	5 cut(s)	371, 685, 753, 802, 1079
NlaIV	GGNNCC	4 cut(s)	83, 241, 349, 663
NmeAIII	GCCGAG	1 cut(s)	470
PfeI	GAWTC	4 cut(s)	175, 246, 316, 355
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	4 cut(s)	83, 241, 349, 663
PspOMI	GGGCCC	1 cut(s)	239
PspPI	GGNCC	5 cut(s)	82, 239, 240, 254, 944
PstI	CTGCAG	2 cut(s)	589, 808
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	2 cut(s)	638, 661
RsaI	GTAC	3 cut(s)	392, 1044, 1074
RsaNI	GTAC	3 cut(s)	391, 1043, 1073
RseI	CAYNNNNRTG	2 cut(s)	262, 893
SacII	CCGCGG	1 cut(s)	253
Sau3AI	GATC	2 cut(s)	638, 661
Sau96I	GGNCC	5 cut(s)	82, 239, 240, 254, 944
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	4 cut(s)	18, 243, 713, 1070
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	2 cut(s)	585, 804
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	262, 893
SmlI	CTYRAG	2 cut(s)	223, 720
SmoI	CTYRAG	2 cut(s)	223, 720
Sse9I	AATT	4 cut(s)	76, 386, 460, 771
SsiI	CCGC	8 cut(s)	85, 250, 252, 300, 303, 442, 503, 690
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	1 cut(s)	1094
TasI	AATT	4 cut(s)	76, 386, 460, 771
TatI	WGTACW	1 cut(s)	1072
TauI	GCSGC	5 cut(s)	255, 303, 444, 505, 692
TfiI	GAWTC	4 cut(s)	175, 246, 316, 355
TscAI	CASTG	2 cut(s)	702, 1070
TseI	GCWGC	5 cut(s)	584, 587, 731, 821, 1111
TspDTI	ATGAA	3 cut(s)	279, 568, 1092
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	2 cut(s)	702, 1070
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.