pycom01g14380

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
14566015 .. 14568844
2830 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g14380.4

Sequence Viewer

Length: 1335 bp
ATGGAACCATGGAATAAACTTAGCTCTAGAATTCTCCAACCAAAATCAAAGCAACCCAACTTCCTTTCTTCCCAAACGCAACAGAAAATCAACAGCAGAAGAAGAAAGAGAGCTGCTAAAATAAGCAAACGCAGACCTCTCCAGCTTCTAGTTGTGTTAGTTTTTATAACCGTTTCACCTGAAAGTGAAGAGAGAGAGTCCTGCCGAAACTTAAAAAGCACTTTTTGTAGAAGTTGTTTTGGTTGGCCAGCCATGTCAGCCCTGGTGCTCAAAATGACCACAGCAGCCTCCTCTATATACCCCAAAAAGCCCTACCAAATCCTCTTCAATTCCATCTCCTCTCCCTCCCCTCCCCCAAATCGTAAAATCCTCGTTGCAGCATTATCGCAAACACATAAATACTCCGGCTGCAGGATAATCCCCTGCGCACCATTCCTCCCTTTTCCCCAAAACCCGTCCCCCAGATTCCCTGAATGCTTCTCCGCCTCTTCTTCCTCCCGCAACCGTAGTGACGCTAGTGGGGTTTCCTCCGAAGATCGCGGAGAGTCCTCTGGTGGGTCCGGCTCTGAGTCCGGCCCCGGTGGTGGTGGTGGTGGTGCTCTTATGGCCGATATGGGTTCGGCGAATCATAAAGGCGCCGATTGGTACGACAGCCCATTGTACCCGAACCAAGACGAATTGCTTTCTCCTCTGCAACATCAACAACAAAAACAACAGCAGCTGCAATCCCAATCCTCCTCCAAATTCCTCACCTTGCCCACCATTCTAACACTCGGCCGCGTCGCCTCCGTGCCGGTTCTCGTTAGCACTTTCTATGTCGATAGTTGGTGGGGAACAACTGCCACAACTAGTATTTTCATTGCTGCAGCAATTACTGATTGGCTCGATGGGTATATTGCTCGGAAGATGAGATCAGGATCTGCATTTGGCGCATTTTTGGATCCGGTAGCTGATAAGCTCATGGTTGCAGCGACACTGGTTTTATTGTGTTCTAGGCCTTTGGATGTTGCTATGTTTGGGCAAGTTCCATGGCTCTTTGTTGTTCCTTCAATTGCTATAATTGGTAGAGAGATAACCATGTCTGCAGTTAGAGAATGGGCTGCTTCTCAGAACGCTAAACTTTTAGAGGCTGTAGCTGTAAATAACTTGGGAAAGTGGAAAACGGCCACACAGATGATAGCACTAACTATCCTCTTGGCAACCCGAGACAACAGCCTTGGAAGACCAGAGGTTCTAGTAGCTTCTGGTGTTGTTTTGCTTTATGTTTCAGCAGGCCTTGCTGTATGGTCTTTGGTTGTGTATATGAGCAAGATATGGAAGGTACTGCTGAGGTAG

Protein Analysis

445

Amino Acids

48.39

Weight (kDa)

9.87

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
Acc16I TGCGCA 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 635
AccII CGCG 2 cut(s) 540, 780
AciI CCGC 4 cut(s) 483, 499, 540, 778
AclWI GGATC 3 cut(s) 925, 935, 948
AcoI YGGCCR 4 cut(s) 245, 606, 775, 1164
AcsI RAATTY 2 cut(s) 30, 743
AcyI GRCGYC 1 cut(s) 636
AfaI GTAC 3 cut(s) 647, 662, 1323
AfiI CCNNNNNNNGG 3 cut(s) 411, 555, 584
AgsI TTSAA 2 cut(s) 328, 1050
AhlI ACTAGT 1 cut(s) 848
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 8 cut(s) 24, 113, 145, 721, 950, 958, 1136, 1241
AluI AGCT 8 cut(s) 24, 113, 145, 721, 950, 958, 1136, 1241
Alw21I GWGCWC 2 cut(s) 270, 601
Alw26I GTCTC 1 cut(s) 1200
AlwI GGATC 3 cut(s) 925, 935, 948
AlwNI CAGNNNCTG 2 cut(s) 721, 920
Ama87I CYCGRG 1 cut(s) 1203
AoxI GGCC 7 cut(s) 245, 574, 606, 775, 995, 1164, 1273
ApoI RAATTY 2 cut(s) 30, 743
AspLEI GCGC 3 cut(s) 428, 638, 932
AspS9I GGNCC 2 cut(s) 558, 575
AsuC2I CCSGG 1 cut(s) 579
AsuHPI GGTGA 2 cut(s) 168, 742
AvaI CYCGRG 1 cut(s) 1203
AvaII GGWCC 1 cut(s) 558
BalI TGGCCA 1 cut(s) 247
BamHI GGATCC 1 cut(s) 940
BanI GGYRCC 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 1228
Bbv12I GWGCWC 2 cut(s) 270, 601
BbvCI CCTCAGC 1 cut(s) 1328
BccI CCATC 2 cut(s) 341, 881
BceAI ACGGC 1 cut(s) 1179
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 1 cut(s) 579
BcoDI GTCTC 1 cut(s) 1200
BcuI ACTAGT 1 cut(s) 848
BfaI CTAG 6 cut(s) 27, 149, 516, 849, 993, 1235
BfmI CTRYAG 4 cut(s) 409, 864, 1083, 1131
BfoI RGCGCY 1 cut(s) 639
Bme1390I CCNGG 2 cut(s) 263, 579
Bme18I GGWCC 1 cut(s) 558
BmeT110I CYCGRG 1 cut(s) 1203
BmgT120I GGNCC 2 cut(s) 558, 575
BmiI GGNNCC 5 cut(s) 6, 559, 577, 637, 942
BmrFI CCNGG 2 cut(s) 263, 579
BpiI GAAGAC 1 cut(s) 1228
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 1328
BpuMI CCSGG 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 916
BsaHI GRCGYC 1 cut(s) 636
BsaJI CCNNGG 5 cut(s) 8, 261, 577, 1028, 1216
BsaWI WCCGGW 1 cut(s) 943
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 411, 555, 584
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 1 cut(s) 981
Bse3DI GCAATG 1 cut(s) 858
Bse8I GATNNNNATC 1 cut(s) 916
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 5 cut(s) 8, 261, 577, 1028, 1216
BseGI GGATG 1 cut(s) 1009
BseJI GATNNNNATC 1 cut(s) 916
BseLI CCNNNNNNNGG 3 cut(s) 411, 555, 584
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 3 cut(s) 558, 1121, 1319
BseNI ACTGG 1 cut(s) 981
BseRI GAGGAG 4 cut(s) 280, 328, 678, 727
BseX3I CGGCCG 1 cut(s) 775
Bsh1236I CGCG 2 cut(s) 540, 780
Bsh1285I CGRYCG 1 cut(s) 778
BshFI GGCC 7 cut(s) 247, 576, 608, 777, 997, 1166, 1275
BshNI GGYRCC 1 cut(s) 635
BsiEI CGRYCG 1 cut(s) 778
BsiHKAI GWGCWC 2 cut(s) 270, 601
BsiHKCI CYCGRG 1 cut(s) 1203
BsiSI CCGG 6 cut(s) 405, 561, 573, 579, 794, 944
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 3 cut(s) 411, 555, 584
BsmAI GTCTC 1 cut(s) 1200
BsmFI GGGAC 1 cut(s) 442
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 7 cut(s) 247, 576, 608, 777, 997, 1166, 1275
BsoBI CYCGRG 1 cut(s) 1203
Bsp1286I GDGCHC 2 cut(s) 270, 601
Bsp143I GATC 4 cut(s) 535, 911, 917, 940
Bsp19I CCATGG 2 cut(s) 8, 1028
BspACI CCGC 4 cut(s) 483, 499, 540, 778
BspANI GGCC 7 cut(s) 247, 576, 608, 777, 997, 1166, 1275
BspCNI CTCAG 3 cut(s) 559, 1120, 1320
BspFNI CGCG 2 cut(s) 540, 780
BspLI GGNNCC 5 cut(s) 6, 559, 577, 637, 942
BspMAI CTGCAG 3 cut(s) 413, 868, 1087
BspPI GGATC 3 cut(s) 925, 935, 948
BspT107I GGYRCC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 858
BsrFI RCCGGY 1 cut(s) 793
BsrI ACTGG 1 cut(s) 981
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 5 cut(s) 8, 261, 577, 1028, 1216
BssMI GATC 4 cut(s) 535, 911, 917, 940
BssNI GRCGYC 1 cut(s) 636
BssT1I CCWWGG 3 cut(s) 8, 1028, 1216
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 172, 506
Bst6I CTCTTC 3 cut(s) 183, 329, 493
BstACI GRCGYC 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 1277
BstC8I GCNNGC 2 cut(s) 249, 1273
BstDEI CTNAG 4 cut(s) 20, 567, 1107, 1328
BstDSI CCRYGG 2 cut(s) 8, 1028
BstF5I GGATG 1 cut(s) 1009
BstFNI CGCG 2 cut(s) 540, 780
BstH2I RGCGCY 1 cut(s) 639
BstHHI GCGC 3 cut(s) 428, 638, 932
BstKTI GATC 4 cut(s) 538, 914, 920, 943
BstMAI GTCTC 1 cut(s) 1200
BstMBI GATC 4 cut(s) 535, 911, 917, 940
BstMCI CGRYCG 1 cut(s) 778
BstMWI GCNNNNNNNGC 4 cut(s) 257, 605, 929, 1277
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 261, 577
BstSFI CTRYAG 4 cut(s) 409, 864, 1083, 1131
BstUI CGCG 2 cut(s) 540, 780
BstV2I GAAGAC 1 cut(s) 1228
BstX2I RGATCY 2 cut(s) 917, 940
BstYI RGATCY 2 cut(s) 917, 940
BstZI CGGCCG 1 cut(s) 775
BsuRI GGCC 7 cut(s) 247, 576, 608, 777, 997, 1166, 1275
BtgI CCRYGG 2 cut(s) 8, 1028
BtsCI GGATG 1 cut(s) 1009
BtsIMutI CAGTG 1 cut(s) 974
Cac8I GCNNGC 2 cut(s) 249, 1273
CaiI CAGNNNCTG 2 cut(s) 721, 920
CfoI GCGC 3 cut(s) 428, 638, 932
Cfr10I RCCGGY 1 cut(s) 793
Cfr13I GGNCC 2 cut(s) 558, 575
CseI GACGC 2 cut(s) 521, 769
Csp6I GTAC 3 cut(s) 646, 661, 1322
CviAII CATG 5 cut(s) 9, 253, 961, 1029, 1078
CviQI GTAC 3 cut(s) 646, 661, 1322
DdeI CTNAG 4 cut(s) 20, 567, 1107, 1328
DinI GGCGCC 1 cut(s) 637
DpnI GATC 4 cut(s) 537, 913, 919, 942
DpnII GATC 4 cut(s) 535, 911, 917, 940
EaeI YGGCCR 4 cut(s) 245, 606, 775, 1164
EagI CGGCCG 1 cut(s) 775
Eam1104I CTCTTC 3 cut(s) 183, 329, 493
EarI CTCTTC 3 cut(s) 183, 329, 493
EciI GGCGGA 1 cut(s) 472
EclXI CGGCCG 1 cut(s) 775
Eco130I CCWWGG 3 cut(s) 8, 1028, 1216
Eco147I AGGCCT 2 cut(s) 997, 1275
Eco47I GGWCC 1 cut(s) 558
Eco52I CGGCCG 1 cut(s) 775
Eco88I CYCGRG 1 cut(s) 1203
EcoRI GAATTC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 3 cut(s) 8, 1028, 1216
EgeI GGCGCC 1 cut(s) 637
EheI GGCGCC 1 cut(s) 637
ErhI CCWWGG 3 cut(s) 8, 1028, 1216
FaeI CATG 5 cut(s) 12, 256, 964, 1032, 1081
FaqI GGGAC 1 cut(s) 442
FatI CATG 5 cut(s) 8, 252, 960, 1028, 1077
FauI CCCGC 1 cut(s) 506
FokI GGATG 1 cut(s) 1016
FspBI CTAG 6 cut(s) 27, 149, 516, 849, 993, 1235
FspI TGCGCA 1 cut(s) 427
GlaI GCGC 3 cut(s) 427, 637, 931
GsuI CTGGAG 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 639
HaeIII GGCC 7 cut(s) 247, 576, 608, 777, 997, 1166, 1275
HapII CCGG 6 cut(s) 405, 561, 573, 579, 794, 944
HgaI GACGC 2 cut(s) 521, 769
HhaI GCGC 3 cut(s) 428, 638, 932
Hin1I GRCGYC 1 cut(s) 636
Hin1II CATG 5 cut(s) 12, 256, 964, 1032, 1081
Hin6I GCGC 3 cut(s) 426, 636, 930
HinP1I GCGC 3 cut(s) 426, 636, 930
HinfI GANTC 5 cut(s) 197, 465, 545, 569, 625
HpaII CCGG 6 cut(s) 405, 561, 573, 579, 794, 944
HphI GGTGA 2 cut(s) 168, 742
Hpy188I TCNGA 4 cut(s) 532, 568, 903, 1110
Hpy188III TCNNGA 2 cut(s) 27, 915
Hpy99I CGWCG 1 cut(s) 785
HpyAV CCTTC 2 cut(s) 1056, 1312
HpyCH4III ACNGT 2 cut(s) 172, 506
HpyCH4V TGCA 8 cut(s) 377, 411, 694, 724, 866, 923, 968, 1085
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 605, 929, 1277
HpyF3I CTNAG 4 cut(s) 20, 567, 1107, 1328
Hsp92I GRCGYC 1 cut(s) 636
Hsp92II CATG 5 cut(s) 12, 256, 964, 1032, 1081
HspAI GCGC 3 cut(s) 426, 636, 930
KasI GGCGCC 1 cut(s) 635
Kzo9I GATC 4 cut(s) 535, 911, 917, 940
MaeI CTAG 6 cut(s) 27, 149, 516, 849, 993, 1235
MaeIII GTNAC 1 cut(s) 509
MalI GATC 4 cut(s) 537, 913, 919, 942
MboI GATC 4 cut(s) 535, 911, 917, 940
MfeI CAATTG 1 cut(s) 1050
MflI RGATCY 2 cut(s) 917, 940
MhlI GDGCHC 2 cut(s) 270, 601
MlsI TGGCCA 1 cut(s) 247
MluCI AATT 7 cut(s) 30, 328, 677, 743, 870, 1050, 1059
MluNI TGGCCA 1 cut(s) 247
Mly113I GGCGCC 1 cut(s) 636
MlyI GAGTC 3 cut(s) 206, 554, 578
MmeI TCCRAC 1 cut(s) 61
Mox20I TGGCCA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 247
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 1172
Msp20I TGGCCA 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 721
MspI CCGG 6 cut(s) 405, 561, 573, 579, 794, 944
MspR9I CCNGG 2 cut(s) 263, 579
MunI CAATTG 1 cut(s) 1050
Mva1269I GAATGC 1 cut(s) 479
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 2 cut(s) 540, 780
MwoI GCNNNNNNNGC 4 cut(s) 257, 605, 929, 1277
NarI GGCGCC 1 cut(s) 636
NciI CCSGG 1 cut(s) 579
NcoI CCATGG 2 cut(s) 8, 1028
NdeII GATC 4 cut(s) 535, 911, 917, 940
NlaIII CATG 5 cut(s) 12, 256, 964, 1032, 1081
NlaIV GGNNCC 5 cut(s) 6, 559, 577, 637, 942
NmeAIII GCCGAG 1 cut(s) 753
NmuCI GTSAC 1 cut(s) 509
NsbI TGCGCA 1 cut(s) 427
PceI AGGCCT 2 cut(s) 997, 1275
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 2 cut(s) 465, 625
PleI GAGTC 3 cut(s) 205, 553, 577
PluTI GGCGCC 1 cut(s) 639
PpsI GAGTC 3 cut(s) 205, 553, 577
PsiI TTATAA 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 5 cut(s) 6, 559, 577, 637, 942
PspPI GGNCC 2 cut(s) 558, 575
PstI CTGCAG 3 cut(s) 413, 868, 1087
PstNI CAGNNNCTG 2 cut(s) 721, 920
PsuI RGATCY 2 cut(s) 917, 940
PvuII CAGCTG 1 cut(s) 721
RsaI GTAC 3 cut(s) 647, 662, 1323
RsaNI GTAC 3 cut(s) 646, 661, 1322
RseI CAYNNNNRTG 1 cut(s) 1172
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 4 cut(s) 535, 911, 917, 940
Sau96I GGNCC 2 cut(s) 558, 575
SchI GAGTC 3 cut(s) 206, 554, 578
ScrFI CCNGG 2 cut(s) 263, 579
SduI GDGCHC 2 cut(s) 270, 601
SfcI CTRYAG 4 cut(s) 409, 864, 1083, 1131
SfoI GGCGCC 1 cut(s) 637
SinI GGWCC 1 cut(s) 558
SmiMI CAYNNNNRTG 1 cut(s) 1172
SpeI ACTAGT 1 cut(s) 848
Sse9I AATT 7 cut(s) 30, 328, 677, 743, 870, 1050, 1059
SseBI AGGCCT 2 cut(s) 997, 1275
SsiI CCGC 4 cut(s) 483, 499, 540, 778
SspDI GGCGCC 1 cut(s) 635
SspMI CTAG 6 cut(s) 27, 149, 516, 849, 993, 1235
StuI AGGCCT 2 cut(s) 997, 1275
StyD4I CCNGG 2 cut(s) 261, 577
StyI CCWWGG 3 cut(s) 8, 1028, 1216
TaaI ACNGT 2 cut(s) 172, 506
TaqI TCGA 2 cut(s) 819, 885
TasI AATT 7 cut(s) 30, 328, 677, 743, 870, 1050, 1059
TauI GCSGC 1 cut(s) 780
TfiI GAWTC 2 cut(s) 465, 625
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 981
TseFI GTSAC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 847
TspGWI ACGGA 1 cut(s) 778
TspRI CASTG 1 cut(s) 981
VpaK11BI GGWCC 1 cut(s) 558
XapI RAATTY 2 cut(s) 30, 743
XbaI TCTAGA 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XspI CTAG 6 cut(s) 27, 149, 516, 849, 993, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.