Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000112.1

Orthogroup ID

OG0009393

Physical Location & Seq

Genomic Coordinates Reverse (-)

184443 .. 187198

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000112.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgtcagcccttgtgctcaaaatgaccacagcaacctctcctataaaaccccacccccaaaatctcctcctccccaattgggtccgccctcgttctctctctcgctcctccttcacaaccacccaccacccaacaaccctccaaacccaaacccaaaatcagaatcgcaaatacaagtggtggagactaccctccccctcctcgactcccctgcttgggcccagattccgcggcccatataaatgcctggccatttctccctcctcttcatctgctagcggcggtcgctccgagaatcaaggagaggggggtcttatggccgatatgggttcccagaatcataaaggccatgagtggttcgacggcaaattgtacgctgataaagacgggttgctttcccctaatcacgatgcccaatcaacgccgcctcatcaatcccctaaattgctcaccttgcccaccattctcaccctcggccgcgtcgccgccgtccccgttctcatcagcactttctatgtggatagttggttgggaaaaactgctacaacaagtatattcatcgctgcagcgattactgactggcttgatggctatcttgctcgcaagatgaggttaggatcggcttttggtgcatttctggatccagtcgctgataagctcatggttgctgcgacactggttttattgtgctccagacctcaagatgttgctgcatttgggcaagtgccgtggctattggttgttccttcaattgccataataggtagagagataaccatgtctgcagttagagaatgggctgcttctcagaacgccaagcttttagaggctgttgctgtaaataacttgggaaagtggaaaacagccacacagatgatcgcactaactatcctcttggccacccgagatagcagtcttggagggccagagtttgtagtagcctctggggttgttctgctttatatatcagcagggcttgctgtatggtctttagaactacttgtcagtgctctgtacatgaacccattgatgaccgttatcgcacattggagcagcattttgctgatagttgatgaaggaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008444 GO:0008610 GO:0008654 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0030145 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046872 GO:0046914 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

361

Amino Acids

39.02

Weight (kDa)

9.51

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39290 AT3G55030
fragaria_vesca	FvH4_7g20600 FvH4_7g20600
malus_domestica	MD01G1114900.v1.1 MD07G1182900.v1.1
prunus_persica	Prupe.2G221600_v2.0.a1
pyrus_communis	pycom01g14380 pycom07g17550
rosa_chinensis	RchiOBHm_Chr1g0364641
rosa_laevigata	RLG00000027470
rosa_multiflora	Rmu_ssc0000112.1_g000038 Rmu_ssc0000282.1_g000017
rosa_roxburghii	Rroxscaffold_4G00291780 Rroxscaffold_4G00292200
rosa_rugosa	Rorug01G0317300 Rorug01G0317300
rosa_samantha	Rh1AG326300 Rh1BG287500 Rh1CG304300 Rh1DG319200
rosa_wichuraiana	Rw1G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	231, 480
AciI	CCGC	8 cut(s)	85, 229, 231, 279, 282, 425, 478, 486
AclWI	GGATC	3 cut(s)	625, 635, 648
AcoI	YGGCCR	4 cut(s)	249, 318, 475, 897
AfaI	GTAC	2 cut(s)	374, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	79, 215, 216
AgsI	TTSAA	1 cut(s)	750
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	658, 820
AluI	AGCT	2 cut(s)	658, 820
Alw21I	GWGCWC	3 cut(s)	18, 692, 1012
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	3 cut(s)	625, 635, 648
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	903
AoxI	GGCC	8 cut(s)	218, 232, 249, 318, 346, 475, 897, 923
ApaI	GGGCCC	1 cut(s)	222
ApeKI	GCWGC	6 cut(s)	563, 566, 668, 710, 800, 1053
AspS9I	GGNCC	5 cut(s)	82, 218, 219, 233, 923
AsuHPI	GGTGA	2 cut(s)	442, 460
AsuNHI	GCTAGC	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	903
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	222
BalI	TGGCCA	2 cut(s)	251, 899
BamHI	GGATCC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	3 cut(s)	18, 692, 1012
BbvI	GCAGC	6 cut(s)	550, 578, 655, 697, 787, 1065
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	3 cut(s)	379, 473, 712
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	2 cut(s)	564, 783
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	903
BmgT120I	GGNCC	5 cut(s)	82, 218, 219, 233, 923
BmiI	GGNNCC	4 cut(s)	83, 220, 331, 642
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	400
BmtI	GCTAGC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	684
BsaBI	GATNNNNATC	1 cut(s)	591
BsaJI	CCNNGG	3 cut(s)	229, 472, 728
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 215, 216
Bse1I	ACTGG	3 cut(s)	584, 644, 681
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	3 cut(s)	229, 472, 728
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	3 cut(s)	79, 215, 216
BseMII	CTCAG	1 cut(s)	821
BseNI	ACTGG	3 cut(s)	584, 644, 681
BseRI	GAGGAG	5 cut(s)	56, 59, 97, 190, 253
BseSI	GKGCMC	1 cut(s)	222
BseX3I	CGGCCG	1 cut(s)	475
BseXI	GCAGC	6 cut(s)	550, 578, 655, 697, 787, 1065
Bsh1236I	CGCG	2 cut(s)	231, 480
Bsh1285I	CGRYCG	2 cut(s)	286, 478
BshFI	GGCC	8 cut(s)	220, 234, 251, 320, 348, 477, 899, 925
BsiEI	CGRYCG	2 cut(s)	286, 478
BsiHKAI	GWGCWC	3 cut(s)	18, 692, 1012
BsiHKCI	CYCGRG	1 cut(s)	903
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	3 cut(s)	79, 215, 216
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	8 cut(s)	220, 234, 251, 320, 348, 477, 899, 925
BsoBI	CYCGRG	1 cut(s)	903
Bsp120I	GGGCCC	1 cut(s)	218
Bsp1286I	GDGCHC	4 cut(s)	18, 222, 692, 1012
Bsp1407I	TGTACA	1 cut(s)	1014
Bsp143I	GATC	3 cut(s)	617, 640, 876
BspACI	CCGC	8 cut(s)	85, 229, 231, 279, 282, 425, 478, 486
BspANI	GGCC	8 cut(s)	220, 234, 251, 320, 348, 477, 899, 925
BspCNI	CTCAG	1 cut(s)	820
BspFNI	CGCG	2 cut(s)	231, 480
BspLI	GGNNCC	4 cut(s)	83, 220, 331, 642
BspMAI	CTGCAG	2 cut(s)	568, 787
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	3 cut(s)	625, 635, 648
BsrGI	TGTACA	1 cut(s)	1014
BsrI	ACTGG	3 cut(s)	584, 644, 681
BssECI	CCNNGG	3 cut(s)	229, 472, 728
BssMI	GATC	3 cut(s)	617, 640, 876
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	1036
Bst6I	CTCTTC	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstAUI	TGTACA	1 cut(s)	1014
BstC8I	GCNNGC	3 cut(s)	277, 601, 978
BstDEI	CTNAG	1 cut(s)	807
BstDSI	CCRYGG	2 cut(s)	229, 728
BstFNI	CGCG	2 cut(s)	231, 480
BstKTI	GATC	3 cut(s)	620, 643, 879
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	3 cut(s)	617, 640, 876
BstMCI	CGRYCG	2 cut(s)	286, 478
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 454, 629, 977
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	564, 783
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	2 cut(s)	231, 480
BstV1I	GCAGC	6 cut(s)	550, 578, 655, 697, 787, 1065
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BstZI	CGGCCG	1 cut(s)	475
BsuRI	GGCC	8 cut(s)	220, 234, 251, 320, 348, 477, 899, 925
BtgI	CCRYGG	2 cut(s)	229, 728
BtgZI	GCGATG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	674, 1012
Cac8I	GCNNGC	3 cut(s)	277, 601, 978
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr13I	GGNCC	5 cut(s)	82, 218, 219, 233, 923
Cfr42I	CCGCGG	1 cut(s)	232
CseI	GACGC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	373, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	710, 745
CviAII	CATG	4 cut(s)	350, 661, 778, 1018
CviQI	GTAC	2 cut(s)	373, 1015
DdeI	CTNAG	1 cut(s)	807
DpnI	GATC	3 cut(s)	619, 642, 878
DpnII	GATC	3 cut(s)	617, 640, 876
EaeI	YGGCCR	4 cut(s)	249, 318, 475, 897
EagI	CGGCCG	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	475
Eco88I	CYCGRG	1 cut(s)	903
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	4 cut(s)	353, 664, 781, 1021
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	4 cut(s)	349, 660, 777, 1017
FriOI	GRGCYC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	676
HaeIII	GGCC	8 cut(s)	220, 234, 251, 320, 348, 477, 899, 925
HgaI	GACGC	1 cut(s)	469
Hin1II	CATG	4 cut(s)	353, 664, 781, 1021
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	5 cut(s)	163, 205, 225, 295, 337
HphI	GGTGA	2 cut(s)	442, 460
Hpy188I	TCNGA	3 cut(s)	162, 292, 810
Hpy188III	TCNNGA	4 cut(s)	407, 638, 693, 701
Hpy99I	CGWCG	2 cut(s)	365, 485
HpyAV	CCTTC	3 cut(s)	121, 756, 1070
HpyCH4III	ACNGT	1 cut(s)	1036
HpyCH4V	TGCA	4 cut(s)	566, 632, 713, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 454, 629, 977
HpyF3I	CTNAG	1 cut(s)	807
Hsp92II	CATG	4 cut(s)	353, 664, 781, 1021
KspI	CCGCGG	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	617, 640, 876
LmnI	GCTCC	4 cut(s)	110, 293, 695, 1050
Lsp1109I	GCAGC	6 cut(s)	550, 578, 655, 697, 787, 1065
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	276
MalI	GATC	3 cut(s)	619, 642, 878
MboI	GATC	3 cut(s)	617, 640, 876
MboII	GAAGA	1 cut(s)	258
MfeI	CAATTG	2 cut(s)	76, 750
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	4 cut(s)	18, 222, 692, 1012
MlsI	TGGCCA	2 cut(s)	251, 899
MluCI	AATT	4 cut(s)	76, 368, 443, 750
MluNI	TGGCCA	2 cut(s)	251, 899
MlyI	GAGTC	1 cut(s)	199
Mox20I	TGGCCA	2 cut(s)	251, 899
MscI	TGGCCA	2 cut(s)	251, 899
MslI	CAYNNNNRTG	2 cut(s)	241, 872
Msp20I	TGGCCA	2 cut(s)	251, 899
MspA1I	CMGCKG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	2 cut(s)	76, 750
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	2 cut(s)	231, 480
MwoI	GCNNNNNNNGC	4 cut(s)	285, 454, 629, 977
NdeII	GATC	3 cut(s)	617, 640, 876
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	353, 664, 781, 1021
NlaIV	GGNNCC	4 cut(s)	83, 220, 331, 642
NmeAIII	GCCGAG	1 cut(s)	453
PfeI	GAWTC	4 cut(s)	163, 225, 295, 337
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	4 cut(s)	83, 220, 331, 642
PspOMI	GGGCCC	1 cut(s)	218
PspPI	GGNCC	5 cut(s)	82, 218, 219, 233, 923
PstI	CTGCAG	2 cut(s)	568, 787
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	2 cut(s)	374, 1016
RsaNI	GTAC	2 cut(s)	373, 1015
RseI	CAYNNNNRTG	2 cut(s)	241, 872
SacII	CCGCGG	1 cut(s)	232
Sau3AI	GATC	3 cut(s)	617, 640, 876
Sau96I	GGNCC	5 cut(s)	82, 218, 219, 233, 923
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	4 cut(s)	18, 222, 692, 1012
SetI	ASST	7 cut(s)	38, 455, 614, 660, 700, 766, 822
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	2 cut(s)	564, 783
Sfr303I	CCGCGG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	2 cut(s)	241, 872
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
Sse9I	AATT	4 cut(s)	76, 368, 443, 750
SsiI	CCGC	8 cut(s)	85, 229, 231, 279, 282, 425, 478, 486
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	1036
TaqI	TCGA	2 cut(s)	203, 360
TasI	AATT	4 cut(s)	76, 368, 443, 750
TatI	WGTACW	1 cut(s)	1014
TauI	GCSGC	5 cut(s)	234, 282, 427, 480, 488
TfiI	GAWTC	4 cut(s)	163, 225, 295, 337
TscAI	CASTG	2 cut(s)	681, 1012
TseI	GCWGC	6 cut(s)	563, 566, 668, 710, 800, 1053
TspDTI	ATGAA	3 cut(s)	258, 547, 1034
TspRI	CASTG	2 cut(s)	681, 1012
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.