AT2G39580

Putative zinc-finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003732
Physical Location & Seq
Forward (+)
16510273 .. 16517200
6928 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39580.1

Sequence Viewer

Length: 4734 bp
ATGACGACACCAATCACCGGGAAAAACTCTCCTGTTACCGGAAAAGAAGAAGGCGAACTATCTACCTCCGACGACGAAGTACAACCAATGCAAACAAGCACGAGATCTCCTCTTACTGAACATATATCAGCAAACACAAATATCCAAAGGCGTCAAGCTGGAAATGGTGGATCTTTTATTAAGCCTTCTGATGCTACACCAACGAAGCTGACAAACCCTGGAGGCCGGATTTTTGAGACGAAGCAAGCCATTGCTGCCATTCATGGGAAGAAATTTCCTGTAAGGGGCAACAACAGCAACCTCGTGATAAACTTCTCAGATGATGATAGTGGTAGTGAATCTGATTGTAAAGGACGTACACAGACATCAAAGATTCAACCAAAGGGAACCATATCTGGGAATAGAAACCCGTCTACATTTTCACAAACAAAATTGAAAGGACCAAGACAGATTGATATAAGAGCCATAACAAAGAAGGCATTGTCCACTAGCACCTTTAGTCATGCTGCGACGTCCAAAGTCTCCAACCTTTCATTTGCCAAGGAAATGAAATCCAATAAATATATTCATTCCTCTGAAAGGACGGTTAGCAAAGATGCACAGCGTCCTGAACAGATTGTGGAGTCCAATAGCAACAAACTTCAGGATTTAAAGCAGCAGATTGCGCTTCGGGAAAGTGAGCTGAAGCTTAAGGCTGCACAGCCAAAGAAGGATGCCGTTAACCCAAAAATCACTCCAGCAAGGAGGGTCAGTATTATTTCTGATGATACTAGACATCTAGAACCAAACGAACCTCCCAAGAAACGTTTAAAAGTTAGTGGAATTGACACAAGTCAGCCTGTTATTGATTACAGAGTGGCAGCATCTGCGGCTGCACCAATGAATGCGCCAGACATCCGCAAAAGTCTACTGCCAGGTGTCAATGCAAATTCTAGTTGCAAACACCTCGGAAGTAAGAGTGATGAGATTGTTCCACCTGTTATTCCTCAGCATACTGTGGAAGGAAATACAAGCTCAAGTGTCTTACAAAAAAGCACCGGCAAAGTGAATCATTACGAAGGTGGAAGAGAACTCGAAACAATGAAAAATGTTGATAGGAGCGTGTCAAGTGAACAGTTACTTAAAATAGTCAATGGAAACCATCAGGTTTTTTCTAGATCCTCAAATAACAACTGGAAGCGGCTGCCTTGTTCGAATAATTCTGGCCTCTACAACATCCCGGGAAGTACAACAGTTCCTGGACATAGTCAACTGGATATGCTATCCTTGACGAACCTAGAGGAATCGCTTGACAAAGAGTTGGAGGAAGCACAAGAACGAAAACGCCTTTTTGAAATTGAAGAAAGAAATGCTCTTAAGGTTTATAGAAAGGCACAGAGATCTTTGATAGAGGCAAATGCCAGATGTGCAGAACTTTACAGTAAGAGAGAAATTTTATCTGCTCATTATGGATCTCTCATCGTTCGTGACTCCAGATTGTTGTGGCCTTCTATACATGGTGAGAATCCTGAAACCGGGTTTCACTTCTTGAATAATAGTACTGGAAGCATTGATCTGGCAACCAAAACGGACATTGCTCAGCATTCTCAGCTAGAAAGCAACCACAAATATAACAGTGAATATGTTGGCAGTCATCCTCCACCTCATTCCCGTAGTGGACAGAATTTGGGGTACAGTGATCTTGGTGCTAGTACCTCTGATGGATTGCCTTGCGGTAACAAGCAAACTGCAAGTAGACTATGCTCCCCATCAAGTGATGCAAACATTTTGCCAGATGACGAGTCATTTCCAGTTGACCATGAATCTACCGAGGGGAACCCTGGACATCAAAAAGAAAATATTGATCAAACACTAGGCAATCAGAATGCTTTGCTTCTTGAAGCATCATTAAGATCAAAATTGTTTGACCGTCTAGGCATGAGGGCAGAATCTAGAGGTGGCACATGTTTCAATGAAGAGACTGTGATAGATAGAGGGGATGAAAGAGATTTCGGAAGTGAAGGAACCCAGAGAGATAACGGTAGTCCTTTCTCCGAAATATATCTGCATAATGATTCTCTAGAGCCAGGGGCCAATAAACTGCAAGGAAGTCCATCCGAAGCACCAGTTGAACGACGCTCAATCGAGGAAAATTCGCTAAATTATCAGTTATCTATAGATATGGAGTCCCATAGGAGTTCACCAGAGAATGCCCTTTTATCGTCTGTAGCGTTGTCCGGTCCTTTATTTCGGAGCACAATCTATCATTTGAAAGTCCCAGGGTCTTCAATTACATCTCTGGGACCAGAATATATACTTCAAAACAAGACATATAGCCTATATAGTGATAAAAGACAATGTAGGAGCTTGACGGAAACTATAGTATATGAGAAAAAAATTGGCTTCTACACCTGTAATTTGAAGGTGGACCCTTCTTGGCCTCTCTGCATGTACGAGTTACGTGGAAGGTGCAATAACGATGAATGTTCTTGGCAACATTTCAAGGATTTCTCTGATGACAGTTTGCATCAAAGTCTACATGATCCTGATGGTAGAGTTGGGTCAAGTTCACATCAGAAGACACATAATTCTTCCAAAGGATCCCAGATTTTGGACTCAGTGTTTTCACCAACTTATCTTGTCTCCTTGGATACGATGAAGGTTGACTCGTGGTCTTATGAGTCCGTTCTGGCTCAAAGACATGGACAAATATGGTGCAAGCACTTTAGTGCCTGCCTAGCCTCATCAAACTCGCTTTACAGGAATGTACCTGCAAAGGAAAATGAAGGTCGAATTGTGGTCCTAGGAAATTCGAAAACATACTCATCATACTTCAGGATTAAGCATAGCTTAATGTGGCACATATTTCAGGCCCTTTCTTTGCTTTCACAAGGTCTTGAAGGTGACCCAACTTCTGAGATTCTTTGGGCTGTTTATCTCCTGATTTACCATGCATATGAAGGATCAGATGGGAAAGATATGTTTTCTTATGGGGTCAAACACAGTAGCAGATCATACGTAATTTGGCTTATGTACATCAACAGTCGAGGACAACTTAATGATCAATTAATTGCATATGATACCGCCCTCTCAGCACTTTGCAACCATGCATCTGGGTCCATTGACAGGAATCATGCCAGCGCTTGCATATTAGATGTTTTGTTGCAGATGTTCAACCTTTTGTGCATTTCTGGGAATGTTTCGAAGGCAATACAGAGAATATCCAAGCTTCAGGCTCCAGCAGCAGTTTCTGATGACCCTGACTTTTCACTGATGTCTCACATTCTCACATGCTTAACATATTCTGACAAATGTGTGTTCTGGGTTTGTTGTGTGTACTTAGTTATTTACAGGAAGCTGCCTGACTCTATTATCCGACGACTTGAAATGGAGAAGGAACTACTTGAAATAGAATGGCCTACTGTTAATTTGGATGGTGATCTGAAGCAAATGGCGCTCAGACTATTTGATAAAGGGATGCGTTCCGTAGAACATGGTACCAACAATGGAATACAAAAGCGACCTGCTGGGCTATTTGCTCTGAACTACGCCCTGTTTATGATTGCAGTAGATGAGTTAGAAAGCCGTAGGGACATTTTGAAGGCATCTGTTCAACTCTACCCAACATGCTTGGAGCTAAAATTGTTAGCAGTTAGGATGCAATCAAATGAGTTAAAGGATATGTTTTCGTCTGGGTTTGAAGAGCTTCTCAAGCAGGAAGCAAAAGAGGCGTCATGCATACAGTGTATTTGGAATCAGTATGCTGAATATGCTTTGGAAGGAGGAAGCTACGATTTGGCAAGAGAACTCATGTCCCGGTGGTACGGTTCAGTATGGGATGTTTTGTCCCATAAGTATAAGACAGTACGAGGCAATGAAGAAGAAGGGGATGATAATATGCTGGAATCAGCTTTATCAGATCTAAATGTTGCATCGGATCAGGTGGATGTGATGTTTGGATATCTTAATCTCTCTCTGCATAATCTACTGCAGAGTAACTGGACTGAGGCTCGCTTGGCCATTGACCAAGCACTAAAAGCAACAGCTCCTGAGCATTTCATGCACTGTCTTAGAGAGCATGCTGTGTTTCAGCTAATCAACGAGTTGCAAGCAACGGGTGAATTTTCAATCAACCTACAAATGAGATTACTCAACTCTTATTTGGATCGAGCAAGTTCTTTACCTGTAAAAGAGCCACTATCTTGGAAATTCATTAGCAACAGCGCTGAGAAACCAAGAGTCAGGAAGCTAGTTACTAACCTTCTGGCTCCAGTTTCATCTGAACTCTTTGTGGTGAATGTTGTTCTTGAAGCATGGCACGGACCATCTCTTGTACCCGAGAAGCTAAGTAAGCAAAAGGAACTGGTGGATTTTGTGGAAACAATCTTAGGGTTGGTTCCAAGCAATTACCCGCTGGCTTTGTCTGTAAGTAAGCTGTTAAGGAAAGAAGAGAAACAATCAGATTCTGGTTCCTCCTCGGGTATTCATTTCTGGGCAGGTCTGAATTTGGCGAGTACAATATCTTGTGCCATCCCAGTAGCTCCGGAGTATATTTGGGTGGAGGCTGGAGAAATAGTGAGTGATATCAATGGTTTCAAGACTAGAGCTGAGAGATTCTTGAAGAAAGCATTGTCTGTATATCCAATGTCTGTGAAGTTATGGAGATGTTATTGGAGTTTATGCAAAAGTATAGAAGAGAGAAGGGGTATTGAGATCGAAGAAGCAGCCAGAAAGAAAGGAATCACTCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1577

Amino Acids

175.85

Weight (kDa)

6.6

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 808 - 828 5e-10 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 515
Acc36I ACCTGC 3 cut(s) 2758, 3511, 4466
Acc65I GGTACC 1 cut(s) 3476
AccB1I GGYRCC 1 cut(s) 3476
AccB7I CCANNNNNTGG 1 cut(s) 2590
AccI GTMKAC 4 cut(s) 413, 907, 1735, 2515
AccIII TCCGGA 1 cut(s) 4522
AciI CCGC 6 cut(s) 869, 898, 1180, 1713, 3063, 4391
AclI AACGTT 1 cut(s) 805
AclWI GGATC 9 cut(s) 178, 1152, 1459, 2516, 2574, 2587, 2950, 3924, 4152
AcoI YGGCCR 1 cut(s) 3996
AcsI RAATTY 9 cut(s) 272, 928, 1431, 1663, 2131, 2788, 4100, 4187, 4483
AcuI CTGAAG 5 cut(s) 626, 704, 2797, 3194, 3443
AcyI GRCGYC 3 cut(s) 151, 512, 3710
AfeI AGCGCT 2 cut(s) 3121, 4204
AfiI CCNNNNNNNGG 9 cut(s) 17, 38, 264, 284, 396, 579, 1514, 2590, 3105
AflII CTTAAG 2 cut(s) 689, 1355
AflIII ACRYGT 1 cut(s) 1943
AhdI GACNNNNNGTC 1 cut(s) 2650
AjnI CCWGG 6 cut(s) 217, 913, 1237, 1819, 2065, 2257
AleI CACNNNNGTG 1 cut(s) 2706
Alw21I GWGCWC 1 cut(s) 2237
Alw26I GTCTC 5 cut(s) 230, 526, 1952, 2626, 3261
AlwI GGATC 9 cut(s) 178, 1152, 1459, 2516, 2574, 2587, 2950, 3924, 4152
AlwNI CAGNNNCTG 5 cut(s) 866, 1238, 3230, 4028, 4445
Ama87I CYCGRG 3 cut(s) 1219, 4316, 4456
Aor13HI TCCGGA 1 cut(s) 4522
Aor51HI AGCGCT 2 cut(s) 3121, 4204
AoxI GGCC 8 cut(s) 223, 1204, 1484, 2070, 2417, 2850, 3395, 3996
ApoI RAATTY 9 cut(s) 272, 928, 1431, 1663, 2131, 2788, 4100, 4187, 4483
ArsI GACNNNNNNTTYG 2 cut(s) 3695, 3727
AseI ATTAAT 1 cut(s) 3047
Asp700I GAANNNNTTC 1 cut(s) 3684
Asp718I GGTACC 1 cut(s) 3476
AspA2I CCTAGG 1 cut(s) 2782
AspLEI GCGC 5 cut(s) 667, 889, 3122, 3436, 4205
AspS9I GGNCC 9 cut(s) 440, 2070, 2219, 2282, 2407, 2779, 2851, 3096, 4301
AsuC2I CCSGG 5 cut(s) 19, 1220, 1221, 1516, 3796
AsuHPI GGTGA 8 cut(s) 7, 1511, 2172, 2598, 2894, 3428, 4109, 4285
AsuII TTCGAA 3 cut(s) 1193, 2792, 3182
AvaI CYCGRG 3 cut(s) 1219, 4316, 4456
AvaII GGWCC 7 cut(s) 440, 2219, 2282, 2407, 2779, 3096, 4301
AvrII CCTAGG 1 cut(s) 2782
BalI TGGCCA 1 cut(s) 3998
BamHI GGATCC 1 cut(s) 2579
BanI GGYRCC 1 cut(s) 3476
BauI CACGAG 3 cut(s) 100, 302, 2647
BbsI GAAGAC 2 cut(s) 2256, 2564
Bbv12I GWGCWC 1 cut(s) 2237
BbvCI CCTCAGC 1 cut(s) 987
BccI CCATC 9 cut(s) 1149, 1694, 1756, 2101, 2522, 2942, 3407, 4312, 4517
BceAI ACGGC 2 cut(s) 701, 3549
BcgI CGANNNNNNTGC 2 cut(s) 928, 962
BciT130I CCWGG 6 cut(s) 219, 915, 1239, 1821, 2067, 2259
BciVI GTATCC 1 cut(s) 2623
BclI TGATCA 2 cut(s) 1843, 3040
BcnI CCSGG 5 cut(s) 19, 1220, 1221, 1516, 3796
BcoDI GTCTC 5 cut(s) 230, 526, 1952, 2626, 3261
BfmI CTRYAG 4 cut(s) 2154, 2205, 2358, 3968
BfoI RGCGCY 3 cut(s) 3123, 3437, 4206
BfrI CTTAAG 2 cut(s) 689, 1355
BfuAI ACCTGC 3 cut(s) 2758, 3511, 4466
BfuI GTATCC 1 cut(s) 2623
BglII AGATCT 3 cut(s) 104, 1379, 3898
BlnI CCTAGG 1 cut(s) 2782
BlpI GCTNAGC 1 cut(s) 1578
BmcAI AGTACT 1 cut(s) 1540
Bme18I GGWCC 7 cut(s) 440, 2219, 2282, 2407, 2779, 3096, 4301
BmeRI GACNNNNNGTC 1 cut(s) 2650
BmeT110I CYCGRG 3 cut(s) 1219, 4316, 4456
BmgT120I GGNCC 9 cut(s) 440, 2070, 2219, 2282, 2407, 2779, 2851, 3096, 4301
BmrI ACTGGG 1 cut(s) 4508
BmuI ACTGGG 1 cut(s) 4508
BoxI GACNNNNGTC 1 cut(s) 831
BpiI GAAGAC 2 cut(s) 2256, 2564
BplI GAGNNNNNCTC 2 cut(s) 94, 126
BpmI CTGGAG 6 cut(s) 240, 720, 1456, 3201, 4233, 4566
Bpu10I CCTNAGC 2 cut(s) 987, 4029
Bpu1102I GCTNAGC 1 cut(s) 1578
Bpu14I TTCGAA 3 cut(s) 1193, 2792, 3182
BpuEI CTTGAG 2 cut(s) 1000, 3674
BpuMI CCSGG 5 cut(s) 19, 1220, 1221, 1516, 3796
BsaAI YACGTR 2 cut(s) 2441, 2998
BsaBI GATNNNNATC 1 cut(s) 3417
BsaHI GRCGYC 3 cut(s) 151, 512, 3710
BsaWI WCCGGW 3 cut(s) 38, 2216, 4522
BsaXI ACNNNNNCTCC 6 cut(s) 91, 121, 736, 766, 4539, 4569
Bsc4I CCNNNNNNNGG 9 cut(s) 17, 38, 264, 284, 396, 579, 1514, 2590, 3105
Bse118I RCCGGY 1 cut(s) 1037
Bse1I ACTGG 9 cut(s) 1178, 1257, 1546, 1790, 2105, 3983, 4250, 4347, 4514
Bse3DI GCAATG 3 cut(s) 249, 1572, 3859
Bse8I GATNNNNATC 1 cut(s) 3417
BseAI TCCGGA 1 cut(s) 4522
BseBI CCWGG 6 cut(s) 219, 915, 1239, 1821, 2067, 2259
BseJI GATNNNNATC 1 cut(s) 3417
BseLI CCNNNNNNNGG 9 cut(s) 17, 38, 264, 284, 396, 579, 1514, 2590, 3105
BseMI GCAATG 3 cut(s) 249, 1572, 3859
BseNI ACTGG 9 cut(s) 1178, 1257, 1546, 1790, 2105, 3983, 4250, 4347, 4514
BseRI GAGGAG 2 cut(s) 99, 4444
BseYI CCCAGC 1 cut(s) 3506
BsgI GTGCAG 3 cut(s) 681, 858, 1428
BshFI GGCC 8 cut(s) 225, 1206, 1486, 2072, 2419, 2852, 3397, 3998
BshNI GGYRCC 1 cut(s) 3476
BsiHKAI GWGCWC 1 cut(s) 2237
BsiHKCI CYCGRG 3 cut(s) 1219, 4316, 4456
BsiSI CCGG 9 cut(s) 18, 39, 226, 1038, 1220, 1515, 2217, 3796, 4523
BslFI GGGAC 6 cut(s) 2152, 2240, 2295, 3584, 3778, 3811
BslI CCNNNNNNNGG 9 cut(s) 17, 38, 264, 284, 396, 579, 1514, 2590, 3105
BsmAI GTCTC 5 cut(s) 230, 526, 1952, 2626, 3261
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 6 cut(s) 2152, 2240, 2295, 3584, 3778, 3811
BsmI GAATGC 4 cut(s) 889, 1582, 1870, 2194
BsnI GGCC 8 cut(s) 225, 1206, 1486, 2072, 2419, 2852, 3397, 3998
BsoBI CYCGRG 3 cut(s) 1219, 4316, 4456
Bsp119I TTCGAA 3 cut(s) 1193, 2792, 3182
Bsp1286I GDGCHC 1 cut(s) 2237
Bsp13I TCCGGA 1 cut(s) 4522
Bsp1407I TGTACA 1 cut(s) 3012
Bsp1720I GCTNAGC 1 cut(s) 1578
BspACI CCGC 6 cut(s) 869, 898, 1180, 1713, 3063, 4391
BspANI GGCC 8 cut(s) 225, 1206, 1486, 2072, 2419, 2852, 3397, 3998
BspEI TCCGGA 1 cut(s) 4522
BspMAI CTGCAG 1 cut(s) 3972
BspMI ACCTGC 3 cut(s) 2758, 3511, 4466
BspPI GGATC 9 cut(s) 178, 1152, 1459, 2516, 2574, 2587, 2950, 3924, 4152
BspQI GCTCTTC 1 cut(s) 3675
BspT104I TTCGAA 3 cut(s) 1193, 2792, 3182
BspT107I GGYRCC 1 cut(s) 3476
BspTI CTTAAG 2 cut(s) 689, 1355
BsrDI GCAATG 3 cut(s) 249, 1572, 3859
BsrFI RCCGGY 1 cut(s) 1037
BsrGI TGTACA 1 cut(s) 3012
BsrI ACTGG 9 cut(s) 1178, 1257, 1546, 1790, 2105, 3983, 4250, 4347, 4514
BssAI RCCGGY 1 cut(s) 1037
BssNI GRCGYC 3 cut(s) 151, 512, 3710
BssSI CACGAG 3 cut(s) 100, 302, 2647
BssT1I CCWWGG 3 cut(s) 540, 2625, 2782
Bst2BI CACGAG 3 cut(s) 100, 302, 2647
Bst2UI CCWGG 6 cut(s) 219, 915, 1239, 1821, 2067, 2259
Bst6I CTCTTC 5 cut(s) 1060, 1950, 3675, 4422, 4668
BstACI GRCGYC 3 cut(s) 151, 512, 3710
BstAFI CTTAAG 2 cut(s) 689, 1355
BstAPI GCANNNNNTGC 2 cut(s) 866, 4039
BstAUI TGTACA 1 cut(s) 3012
BstBAI YACGTR 2 cut(s) 2441, 2998
BstBI TTCGAA 3 cut(s) 1193, 2792, 3182
BstC8I GCNNGC 9 cut(s) 246, 2699, 2713, 3118, 3124, 3991, 4059, 4089, 4395
BstEII GGTNACC 1 cut(s) 2882
BstENI CCTNNNNNAGG 1 cut(s) 577
BstH2I RGCGCY 3 cut(s) 3123, 3437, 4206
BstHHI GCGC 5 cut(s) 667, 889, 3122, 3436, 4205
BstMAI GTCTC 5 cut(s) 230, 526, 1952, 2626, 3261
BstNI CCWGG 6 cut(s) 219, 915, 1239, 1821, 2067, 2259
BstNSI RCATGY 5 cut(s) 1947, 2431, 3273, 3609, 4061
BstPAI GACNNNNGTC 1 cut(s) 831
BstPI GGTNACC 1 cut(s) 2882
BstSFI CTRYAG 4 cut(s) 2154, 2205, 2358, 3968
BstSNI TACGTA 1 cut(s) 2998
BstV2I GAAGAC 2 cut(s) 2256, 2564
BstX2I RGATCY 7 cut(s) 104, 170, 1157, 1379, 1451, 2579, 3898
BstXI CCANNNNNNTGG 2 cut(s) 3092, 4182
BstYI RGATCY 7 cut(s) 104, 170, 1157, 1379, 1451, 2579, 3898
BsuI GTATCC 1 cut(s) 2623
BsuRI GGCC 8 cut(s) 225, 1206, 1486, 2072, 2419, 2852, 3397, 3998
BtsIMutI CAGTG 6 cut(s) 1621, 1681, 2604, 3248, 3728, 4042
BveI ACCTGC 3 cut(s) 2758, 3511, 4466
Cac8I GCNNGC 9 cut(s) 246, 2699, 2713, 3118, 3124, 3991, 4059, 4089, 4395
CaiI CAGNNNCTG 5 cut(s) 866, 1238, 3230, 4028, 4445
CfoI GCGC 5 cut(s) 667, 889, 3122, 3436, 4205
Cfr10I RCCGGY 1 cut(s) 1037
Cfr13I GGNCC 9 cut(s) 440, 2070, 2219, 2282, 2407, 2779, 2851, 3096, 4301
Cfr9I CCCGGG 1 cut(s) 1219
CseI GACGC 4 cut(s) 140, 593, 2124, 3699
DraI TTTAAA 2 cut(s) 651, 810
DriI GACNNNNNGTC 1 cut(s) 2650
EaeI YGGCCR 1 cut(s) 3996
Eam1104I CTCTTC 5 cut(s) 1060, 1950, 3675, 4422, 4668
Eam1105I GACNNNNNGTC 1 cut(s) 2650
EarI CTCTTC 5 cut(s) 1060, 1950, 3675, 4422, 4668
Eco105I TACGTA 1 cut(s) 2998
Eco130I CCWWGG 3 cut(s) 540, 2625, 2782
Eco32I GATATC 2 cut(s) 3941, 4564
Eco47I GGWCC 7 cut(s) 440, 2219, 2282, 2407, 2779, 3096, 4301
Eco47III AGCGCT 2 cut(s) 3121, 4204
Eco57I CTGAAG 5 cut(s) 626, 704, 2797, 3194, 3443
Eco88I CYCGRG 3 cut(s) 1219, 4316, 4456
Eco91I GGTNACC 1 cut(s) 2882
EcoNI CCTNNNNNAGG 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 2851
EcoO65I GGTNACC 1 cut(s) 2882
EcoRII CCWGG 6 cut(s) 217, 913, 1237, 1819, 2065, 2257
EcoRV GATATC 2 cut(s) 3941, 4564
EcoT14I CCWWGG 3 cut(s) 540, 2625, 2782
EcoT22I ATGCAT 3 cut(s) 2935, 3091, 3719
ErhI CCWWGG 3 cut(s) 540, 2625, 2782
Esp3I CGTCTC 1 cut(s) 230
FalI AAGNNNNNCTT 2 cut(s) 2813, 2845
FaqI GGGAC 6 cut(s) 2152, 2240, 2295, 3584, 3778, 3811
FauI CCCGC 1 cut(s) 4398
FauNDI CATATG 2 cut(s) 2935, 3055
FbaI TGATCA 2 cut(s) 1843, 3040
FblI GTMKAC 4 cut(s) 413, 907, 1735, 2515
GlaI GCGC 5 cut(s) 666, 888, 3121, 3435, 4204
GsaI CCCAGC 1 cut(s) 3510
GsuI CTGGAG 6 cut(s) 240, 720, 1456, 3201, 4233, 4566
HaeII RGCGCY 3 cut(s) 3123, 3437, 4206
HaeIII GGCC 8 cut(s) 225, 1206, 1486, 2072, 2419, 2852, 3397, 3998
HapII CCGG 9 cut(s) 18, 39, 226, 1038, 1220, 1515, 2217, 3796, 4523
HgaI GACGC 4 cut(s) 140, 593, 2124, 3699
HhaI GCGC 5 cut(s) 667, 889, 3122, 3436, 4205
Hin1I GRCGYC 3 cut(s) 151, 512, 3710
Hin6I GCGC 5 cut(s) 665, 887, 3120, 3434, 4203
HinP1I GCGC 5 cut(s) 665, 887, 3120, 3434, 4203
HincII GTYRAC 4 cut(s) 721, 1250, 1795, 2644
HindII GTYRAC 4 cut(s) 721, 1250, 1795, 2644
HindIII AAGCTT 2 cut(s) 686, 3206
HpaI GTTAAC 1 cut(s) 721
HpaII CCGG 9 cut(s) 18, 39, 226, 1038, 1220, 1515, 2217, 3796, 4523
HphI GGTGA 8 cut(s) 7, 1511, 2172, 2598, 2894, 3428, 4109, 4285
Hpy99I CGWCG 5 cut(s) 74, 77, 514, 2118, 3360
HpyCH4IV ACGT 5 cut(s) 355, 512, 805, 2440, 2997
HpySE526I ACGT 5 cut(s) 355, 512, 805, 2440, 2997
Hsp92I GRCGYC 3 cut(s) 151, 512, 3710
HspAI GCGC 5 cut(s) 665, 887, 3120, 3434, 4203
Kpn2I TCCGGA 1 cut(s) 4522
KpnI GGTACC 1 cut(s) 3480
Ksp22I TGATCA 2 cut(s) 1843, 3040
KspAI GTTAAC 1 cut(s) 721
LguI GCTCTTC 1 cut(s) 3675
LmnI GCTCC 9 cut(s) 1098, 1748, 2232, 2343, 3220, 3613, 4030, 4252, 4525
MaeII ACGT 5 cut(s) 355, 512, 805, 2440, 2997
MaeIII GTNAC 8 cut(s) 34, 1116, 1466, 1715, 2436, 2882, 3974, 4231
MflI RGATCY 7 cut(s) 104, 170, 1157, 1379, 1451, 2579, 3898
MhlI GDGCHC 1 cut(s) 2237
MlsI TGGCCA 1 cut(s) 3998
MluNI TGGCCA 1 cut(s) 3998
MlyI GAGTC 9 cut(s) 632, 1463, 1790, 2174, 2588, 2639, 2669, 3338, 4227
MmeI TCCRAC 4 cut(s) 93, 549, 1281, 3379
Mox20I TGGCCA 1 cut(s) 3998
Mph1103I ATGCAT 3 cut(s) 2935, 3091, 3719
MroI TCCGGA 1 cut(s) 4522
MroXI GAANNNNTTC 1 cut(s) 3684
MscI TGGCCA 1 cut(s) 3998
MslI CAYNNNNRTG 2 cut(s) 2706, 2934
Msp20I TGGCCA 1 cut(s) 3998
MspA1I CMGCKG 1 cut(s) 4393
MspCI CTTAAG 2 cut(s) 689, 1355
MspI CCGG 9 cut(s) 18, 39, 226, 1038, 1220, 1515, 2217, 3796, 4523
Mva1269I GAATGC 4 cut(s) 889, 1582, 1870, 2194
MvaI CCWGG 6 cut(s) 219, 915, 1239, 1821, 2067, 2259
NciI CCSGG 5 cut(s) 19, 1220, 1221, 1516, 3796
NdeI CATATG 2 cut(s) 2935, 3055
NmuCI GTSAC 2 cut(s) 1466, 2882
NsiI ATGCAT 3 cut(s) 2935, 3091, 3719
NspI RCATGY 5 cut(s) 1947, 2431, 3273, 3609, 4061
NspV TTCGAA 3 cut(s) 1193, 2792, 3182
OliI CACNNNNGTG 1 cut(s) 2706
PaeI GCATGC 1 cut(s) 4061
PasI CCCWGGG 1 cut(s) 2258
PciI ACATGT 1 cut(s) 1943
PciSI GCTCTTC 1 cut(s) 3675
PcsI WCGNNNNNNNCGW 1 cut(s) 2207
PctI GAATGC 4 cut(s) 889, 1582, 1870, 2194
PdmI GAANNNNTTC 1 cut(s) 3684
PflFI GACNNNGTC 1 cut(s) 1245
PflMI CCANNNNNTGG 1 cut(s) 2590
PfoI TCCNGGA 1 cut(s) 1237
PleI GAGTC 9 cut(s) 631, 1463, 1789, 2173, 2588, 2639, 2668, 3338, 4226
PpsI GAGTC 9 cut(s) 631, 1463, 1789, 2173, 2588, 2639, 2668, 3338, 4226
Ppu21I YACGTR 2 cut(s) 2441, 2998
PscI ACATGT 1 cut(s) 1943
PshAI GACNNNNGTC 1 cut(s) 831
PshBI ATTAAT 1 cut(s) 3047
Psp1406I AACGTT 1 cut(s) 805
Psp6I CCWGG 6 cut(s) 217, 913, 1237, 1819, 2065, 2257
PspEI GGTNACC 1 cut(s) 2882
PspFI CCCAGC 1 cut(s) 3506
PspGI CCWGG 6 cut(s) 217, 913, 1237, 1819, 2065, 2257
PspPI GGNCC 9 cut(s) 440, 2070, 2219, 2282, 2407, 2779, 2851, 3096, 4301
PstI CTGCAG 1 cut(s) 3972
PstNI CAGNNNCTG 5 cut(s) 866, 1238, 3230, 4028, 4445
PsuI RGATCY 7 cut(s) 104, 170, 1157, 1379, 1451, 2579, 3898
PsyI GACNNNGTC 1 cut(s) 1245
RseI CAYNNNNRTG 2 cut(s) 2706, 2934
SapI GCTCTTC 1 cut(s) 3675
Sau96I GGNCC 9 cut(s) 440, 2070, 2219, 2282, 2407, 2779, 2851, 3096, 4301
ScaI AGTACT 1 cut(s) 1540
SchI GAGTC 9 cut(s) 632, 1463, 1790, 2174, 2588, 2639, 2669, 3338, 4227
SduI GDGCHC 1 cut(s) 2237
SfcI CTRYAG 4 cut(s) 2154, 2205, 2358, 3968
SfuI TTCGAA 3 cut(s) 1193, 2792, 3182
SinI GGWCC 7 cut(s) 440, 2219, 2282, 2407, 2779, 3096, 4301
SmaI CCCGGG 1 cut(s) 1221
SmiMI CAYNNNNRTG 2 cut(s) 2706, 2934
SmlI CTYRAG 4 cut(s) 689, 1015, 1355, 3689
SmoI CTYRAG 4 cut(s) 689, 1015, 1355, 3689
SnaBI TACGTA 1 cut(s) 2998
SphI GCATGC 1 cut(s) 4061
SsiI CCGC 6 cut(s) 869, 898, 1180, 1713, 3063, 4391
SspI AATATT 1 cut(s) 1840
StyI CCWWGG 3 cut(s) 540, 2625, 2782
TaiI ACGT 5 cut(s) 358, 515, 808, 2443, 3000
TaqI TCGA 9 cut(s) 1074, 1193, 2124, 2770, 2792, 3025, 3182, 4147, 4695
TatI WGTACW 6 cut(s) 79, 1226, 1538, 3012, 3315, 4493
TauI GCSGC 2 cut(s) 872, 1183
TscAI CASTG 6 cut(s) 1621, 1681, 2604, 3255, 3728, 4049
TseFI GTSAC 2 cut(s) 1466, 2882
Tsp45I GTSAC 2 cut(s) 1466, 2882
TspGWI ACGGA 5 cut(s) 1583, 2366, 2653, 3454, 4314
TspMI CCCGGG 1 cut(s) 1219
TspRI CASTG 6 cut(s) 1621, 1681, 2604, 3255, 3728, 4049
Tth111I GACNNNGTC 1 cut(s) 1245
Van91I CCANNNNNTGG 1 cut(s) 2590
Vha464I CTTAAG 2 cut(s) 689, 1355
VpaK11BI GGWCC 7 cut(s) 440, 2219, 2282, 2407, 2779, 3096, 4301
VspI ATTAAT 1 cut(s) 3047
XagI CCTNNNNNAGG 1 cut(s) 577
XapI RAATTY 9 cut(s) 272, 928, 1431, 1663, 2131, 2788, 4100, 4187, 4483
XbaI TCTAGA 4 cut(s) 778, 1154, 1931, 2059
XceI RCATGY 5 cut(s) 1947, 2431, 3273, 3609, 4061
XmaI CCCGGG 1 cut(s) 1219
XmaJI CCTAGG 1 cut(s) 2782
XmiI GTMKAC 4 cut(s) 413, 907, 1735, 2515
XmnI GAANNNNTTC 1 cut(s) 3684
ZraI GACGTC 1 cut(s) 513
ZrmI AGTACT 1 cut(s) 1540
Zsp2I ATGCAT 3 cut(s) 2935, 3091, 3719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.