Rroxscaffold_4G00290440

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003732
Physical Location & Seq
Forward (+)
10955531 .. 10974599
19069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290440.1

Sequence Viewer

Length: 5370 bp
ATGGAGCCCGACGGCGCAGCGCCGATGCAAGTCGAGTCCGCGGCGGACAAAAGTCCTTACTCCGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTGTCTTCCGATGATAATGACTGCATGAGTATTGTGTATAGATTTGGGGAAATTCTGGAAATTAGAATCGGATTTTTGATGTTAGATTGTTTCAGTTCCTGGATATTGGAGTTTACTATAGCTTGGGAAAATCCTGTTTTCTCGGTTGCACGTTCCACTGGTACTCCCGGGCCCATGCTGGTTCCACCAGTGAACAAATTCACCCATGGGAATCAAGCGGGGAATGCTGTATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCAACCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCGTTAAAACCTGCGACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGCGTGGGAAACTAAAAGCTTTACATACTAAAAGTAAAATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTAATGCCCAAAAAGTTGTCTATGAATCGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGGAATTTCAATTCCATGAACAAAAATATAGTGAACAGAGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGCACTTAAGGAGACTGAACTGAAGCTCAAGGAAAGTGAACTGAAGCTTAAGTCTGCCCAGCGAACTAAGGAATCAGTTACATGCAAGGATGAGAATGCTAAGGGCCTGCACAGAGATGGAGCTGGTAAGTACAGTACAGGATATTCTGATGGTATGCAGACAGAACCAAAAGAGCCAGATAAAAAGCGTATAAAAGTCAGCGGTGCTTTTTCGACTCAGCTGACTGCACTAAGCCCACAAGAATTACCTGTTGCAAAACCTTTATTACCATCAAAAACCCCAGCAATGGAGGACAATACTCAATTGAATGCCAGTAAGATTGATCATCTCCAAAAAGAAAATCAAGTGCGTCCAATGGAGTCAAGCATTGTAAAATGGCAAGATCCTAATGATAAACATGTCGCTGGAATGTTGGGAAATATACATACTGGACTGAAAGATGGTGCTGGCATCAATGCTAAATATATCCAGTCCGATGGGAGGGGTAAGCAGATGGATTCTGTTGTTACACCAAACCAGGCTAAATCACTGGCAAATATGACGTGCATTGATTTTCCAAATAACTTGAATAGTGTGGAGTTGAATCATACAAATACTAACACAAACACAAATAGCGGCCATCCAGAACCTGGATCCTTCTTAAACAATCCAACATCAGGAAAGAATTTAATGGGAAGTGGTGACCATCAGGAAACCATATCCATTGACAAGAGACTTGAGCCCTCATTCTACAGTAAATGTCAGGCACTCCTAAACAACACAAACCTCTCGAACTGTTTTGGTAATGCAAACGTTACAGGAGATGACAACATGAAGATGCAGTCATTGGTTCAAATGGAGGAAATGCTAGACAAGAATCTGGAGGAAGCACAAGAGCATAGGCGAAGGTGTGAAATTGAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCGCAGAGGGCTCTTCTTGAGGCGAATGCTAGGTGTGATGTTCTTTATCGGAAAAGGGAACTATATTCTGCCGACTTCCGTGCTTACGTTATTAACAATCCCAGTTTGTTATGTTCCTCAAGGCAGAACGAACAAGCTGGACTTGGGTTGGATCACCCTAATAACTTGTCTGAAAATGTGAATTTGATACCCACGTCAAGCCATCGGATGCCGCCAGACCAGAATGACTGCAATTTAGCGGTTATTGATTCCAACATCCAATGCGTTAACAGCGCTCAGATCCCGAATCCCTACCAGCATTTGAGTGGAGAAAACATTGGTTCAGAACCATGCAGTGAACCTGATGCTAGTACATCTGAGCCAGTGCCTCTTCTGGGCAATACTGGCACAGATGGAGTTTTCTCTCCATCCAATGAACCAAATGGTTCAGCAAATGAAGATGATGATACATTTTCATTCGAAAATGAATCTGTTCAACCCAATGGTGAATGCCATCTTGTAGACAAACAAAAGGAGACTGATAATGAATCAAATAGGATAATGTCTATTGACCCCAACGAGGAATCTTTACTTCTCGAAAAGGCTTTGAGGTCTACACTATTTGCAAAGCTAGGATCAAAAAATGTGTCGAAGAACAGTGTTGTATGTAATGGCACAGGGATTGCAGTGGAACGAGAGGCTGAAAATGATGCGAGAAGTGAAGAACCACAAAAAGTAAACGGGAGTTCTCCTGTCTCAGAGGTGGAGAAAAATCAACAATCTGATATTGAAGGCGTTGATGTGCATGAAAAAAGTTTCACTGAGGCTCCTCTTGCGATCCAGAGAAAGCATTCCATCGAACATTTGTCTTTGAATTCTCATTCCAGTGGATATTTTGAGGACAGATGTTCCTTTGGAGGTGACCACTCATTGACTTCTATGATCTTTTCGCCTTCCTACATCTTGAGTAGTGCTTTTGGGTATATGAAGGTTATAGACCCAAACAATGTGATGGAACATCAGGACAGAAGTCAACAGAGTGGAACTCGTGATACTAATATTGAAGAAGGTGCTTGTATAAACTCTGGTAAAGTGCAGTTTAGCAGTACCATGGTAGACACAACGAAAAAGGCTCTGGTGAAATTATGTGATAGAGAAGATGGCTCTTATACCACTGGTCGTGCTGTTGATCCCTTTTGGCCACTTTGCATGTATGAGCTACGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGTTAAGGACTACTCTACCACCGATATGTCCCCACATCAGCATGATAATTCTGAAATTGCTGGTTGTCAGGTTGGAAAAACGTTTTGCAAAGAAAAGTGTGATGGTTCAGCAAAAGTTCCCTGGCGTCACAATTTTACGACTTTACCAACTTACCTTGTTGGCTTAAGTACTCTAAAAGCTGATCTGCATTCATATGATTCTGTTCTAGCACGGAGAAATGGTGAATGCTGGAAGAAGTGTTTCAGCCTTTTCTTAGCATTGTCAAAGTCGTTTCAAAAAGATTTTCCTACAGATGGGCCAGTCTCGCATGGAAATGACGGCCGCATCGAGGTCCCTGTGAGTTGGAACAGACAGTCATCGTATTTCCAGAGTAGAAATAGCGGAGTGAATCAACTGGATCAAGCTTTGGCTGACAATGAGCAATACCTGGAAAAGGCTCTTTTAATTTTCAGTCAGGAGGTCAATGCACCTGAGGGTATGAAAAAGGCCCTTCCTGTATTGTCACGTGCTCTTGAGGCTGATCCAACATCCGTAGTTCTCTGGGTCTTTTATCTGCTTATTTACTATAGCAATATGAAGTCAGTAGGGAAGGATGACATGTTCTCTTGTGCGGTCAACTACAATGATCAATCTTATGAACTTTGGATTATGTTCATCAACAGTCGGGTGCGGCTAAGTGACCGATTGGTTACCTACGATCTTGCCCTCTCAGGACTGTGCCGCCATGCTTCTTCTGCCAAAGATAAAGTGCATGCTAGTGCTTGTATCTTAGACTTAGTTTTGCAAATGGTGGATTGTCTATGCATGTCTGGGAATGTTGAGAGGGCCATTCAGAAAATTTGTGGACTCTTCTCTGCTGCCACAAATATTTATGACCCCGATTCTCCATTGCTTACTGATATGCCCAAATGCCTAACAAGTCATGACAAATGTATTTTGGGGGTGTGTTGTGTTTACTTGGTTATCTATAGGAAACTTCCTGATGCTGTAGTACTGCAGTTTGAATGTCAGAAAGAACTGTTTGCAATAGAATGGCCTTCTATTGAATTAACAGATAATGAAAAGCACAGGGCTGTCAAACTGATGGAAGCAGTAGAAGATTCTGTATGTCAATCGCTGGATAAAAGTGATTTTAATCTCAGTTTGGCACATTTTTTTGCTCTGAGCCACTTAAGGTGCATGGCAGCTATTGACAGCTTAGAAAGGTGTAGTAATCTTCTGGGTAAATATCTTAAAATGTTCCCGTCCTGCTTAGAGCTTGTTCTAATATCGGCAAGGGCCCAAAAACATGCTCCTGGTGATTCGCTTTTTGATGGGTTTGAGGAAGTCCTAAATAATTGGCCAAAAGAAGTCCCGGAATTCAATGCATCTGGAATCAGATTTAAGGAGGATGGTTTTTATTGCCAACGTCAAGAAGCCAAGATTCTTGAAGTGTTCTATTTCTGTCTTGCAATCTTTCGTGCTGTCCCAATTCCGCCAGAGTTTGTATGGGTAGAAGCTGCAGACATATTGGGCAATATGGTGAATGTTGAGAAGGTTAAATTGTCTGTTTTGTGCTGCCAGATTGTTGTAGTTCTGCATGTGCTTCACCAAGAAGCACTTGACCGCCTCAATGCTAACATGAGAGGGCGTGGAGCAAGACCTCAATTCCGGCGCAGATGGCAGCCGCATATTTGTTATTGTTTGATTGGGGAAATAGAAATGTGTGATCTGAAGCCCCATTGCTTGGCGTGGCTTAAGGTTTGGGAGCGACATTCAGGGGCGTTACATGCTGTTTCGGAATCAAAGTCGTTCATGGGAAAGCGCAAAATGATGGAATTGCAATACCCCAAGACACGACGGAGACTCAACTGCATTAATGGCTGTTTATGTTCAGCATTTCTTCTCATCAACTTGCCCTTGGATGAGTGTGCAGGATTTGCTTTTTCCGCAGAATTTGTCAAGCAGGTCAATAATTTGAACCACATGACTGAGGTTTTGATTCCAATAACAAGCATCTCCTATGCTGCCAAAATTGCGCTGGAACAGGATTTGATCTCTGAGGTGAAGAATGCAGCTTTGGAATGTGCAGTCTTGCTGATTGAAGCTAGCAGTAATTTCAGTGGAATGAGCTTCTATATGATGCCTGTATTGGGTCCAATGATTCAACTAACTGCTGGTCCTATTCTCTATCTCGAGAACATAAAATTGTTAATTAATACTCGATTACAACATACAACACCCTATGGACCCATGAATATGACGTTGGACGTTCTCTATGAGGATGTTTGTAATCTTTCTAATGTCGCACGGGGTTCGGGAATTGCTGAAAGAAAGAAAAAAAAACAGATTAAACTGTCACCAATATTCAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1789

Amino Acids

199.09

Weight (kDa)

5.94

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 986 - 1006 1.5e-09 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 427, 4948
AccB7I CCANNNNNTGG 2 cut(s) 1472, 4738
AccI GTMKAC 3 cut(s) 2274, 2366, 2868
AccII CGCG 1 cut(s) 41
AclI AACGTT 2 cut(s) 1635, 3092
AcoI YGGCCR 4 cut(s) 1459, 2951, 3331, 4352
AcsI RAATTY 9 cut(s) 147, 293, 769, 1507, 1954, 2626, 3849, 4370, 4946
AcuI CTGAAG 4 cut(s) 534, 884, 905, 4745
AcvI CACGTG 2 cut(s) 446, 3518
AcyI GRCGYC 2 cut(s) 436, 3136
AfaI GTAC 8 cut(s) 259, 408, 974, 979, 2125, 2860, 3181, 4005
AfeI AGCGCT 1 cut(s) 2047
AflII CTTAAG 5 cut(s) 848, 890, 3175, 4183, 4748
AflIII ACRYGT 2 cut(s) 1240, 3609
AjiI CACGTC 2 cut(s) 1386, 1968
AjnI CCWGG 7 cut(s) 194, 427, 1359, 1471, 3131, 3438, 4306
AjuI GAANNNNNNNTTGG 4 cut(s) 5054, 5086, 5240, 5272
AloI GAACNNNNNNTCC 2 cut(s) 3596, 3628
Alw21I GWGCWC 2 cut(s) 69, 3523
Alw26I GTCTC 6 cut(s) 848, 1549, 2282, 2512, 3319, 4849
AlwNI CAGNNNCTG 2 cut(s) 195, 1472
Ama87I CYCGRG 5 cut(s) 263, 454, 567, 759, 5186
Aor51HI AGCGCT 1 cut(s) 2047
ApaI GGGCCC 3 cut(s) 270, 462, 4294
ApeKI GCWGC 9 cut(s) 17, 3007, 3869, 4196, 4511, 4569, 4675, 5018, 5066
ApoI RAATTY 9 cut(s) 147, 293, 769, 1507, 1954, 2626, 3849, 4370, 4946
ArsI GACNNNNNNTTYG 4 cut(s) 2384, 2416, 4972, 5004
AseI ATTAAT 2 cut(s) 4869, 5208
Asp700I GAANNNNTTC 4 cut(s) 293, 2244, 2602, 3251
AspLEI GCGC 7 cut(s) 17, 22, 1777, 2048, 4668, 4818, 5032
AsuC2I CCSGG 3 cut(s) 264, 265, 4367
AsuII TTCGAA 1 cut(s) 2232
AsuNHI GCTAGC 1 cut(s) 5099
AvaI CYCGRG 5 cut(s) 263, 454, 567, 759, 5186
AvaII GGWCC 4 cut(s) 3343, 5147, 5171, 5240
AxyI CCTNAGG 1 cut(s) 3483
BaeGI GKGCMC 4 cut(s) 270, 451, 462, 4294
BaeI ACNNNNGTAYC 2 cut(s) 1952, 1985
BalI TGGCCA 2 cut(s) 2953, 4354
BamHI GGATCC 1 cut(s) 1475
BanII GRGCYC 7 cut(s) 9, 69, 270, 462, 1566, 1786, 4294
BauI CACGAG 1 cut(s) 2799
BbrPI CACGTG 2 cut(s) 446, 3518
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 2 cut(s) 69, 3523
BbvI GCAGC 9 cut(s) 29, 3019, 3856, 4208, 4498, 4556, 4687, 5005, 5078
BceAI ACGGC 2 cut(s) 28, 3346
BcgI CGANNNNNNTGC 8 cut(s) 740, 774, 1835, 1869, 2964, 2998, 5289, 5323
BciT130I CCWGG 7 cut(s) 196, 429, 1361, 1473, 3133, 3440, 4308
BclI TGATCA 2 cut(s) 1165, 3637
BcnI CCSGG 3 cut(s) 264, 265, 4367
BcoDI GTCTC 6 cut(s) 848, 1549, 2282, 2512, 3319, 4849
BfaI CTAG 8 cut(s) 723, 1691, 1803, 2121, 2384, 3218, 3768, 5100
BfmI CTRYAG 8 cut(s) 213, 1573, 3300, 3577, 3979, 3999, 4007, 4512
BfoI RGCGCY 2 cut(s) 23, 2049
BfrI CTTAAG 5 cut(s) 848, 890, 3175, 4183, 4748
BfuAI ACCTGC 2 cut(s) 427, 4948
BmcAI AGTACT 2 cut(s) 3181, 4005
Bme18I GGWCC 4 cut(s) 3343, 5147, 5171, 5240
BmeT110I CYCGRG 5 cut(s) 263, 454, 567, 759, 5186
BmgBI CACGTC 2 cut(s) 1386, 1968
BmrI ACTGGG 1 cut(s) 1869
BmtI GCTAGC 1 cut(s) 5103
BmuI ACTGGG 1 cut(s) 1869
BoxI GACNNNNGTC 2 cut(s) 51, 2781
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 2782, 2814
BpmI CTGGAG 1 cut(s) 1724
Bpu10I CCTNAGC 1 cut(s) 942
Bpu14I TTCGAA 1 cut(s) 2232
BpuEI CTTGAG 6 cut(s) 854, 1580, 1811, 1876, 2737, 3545
BpuMI CCSGG 3 cut(s) 264, 265, 4367
BsaAI YACGTR 2 cut(s) 446, 3518
BsaBI GATNNNNATC 1 cut(s) 4146
BsaHI GRCGYC 2 cut(s) 436, 3136
BsaJI CCNNGG 8 cut(s) 39, 263, 301, 709, 2862, 3002, 3131, 4911
BsaXI ACNNNNNCTCC 6 cut(s) 244, 274, 2563, 2593, 3217, 3247
Bse21I CCTNAGG 1 cut(s) 3483
Bse3DI GCAATG 4 cut(s) 397, 1134, 3899, 4732
Bse8I GATNNNNATC 1 cut(s) 4146
BseBI CCWGG 7 cut(s) 196, 429, 1361, 1473, 3133, 3440, 4308
BseDI CCNNGG 8 cut(s) 39, 263, 301, 709, 2862, 3002, 3131, 4911
BseJI GATNNNNATC 1 cut(s) 4146
BseMI GCAATG 4 cut(s) 397, 1134, 3899, 4732
BseRI GAGGAG 1 cut(s) 2571
BseSI GKGCMC 4 cut(s) 270, 451, 462, 4294
BseX3I CGGCCG 1 cut(s) 3331
BseXI GCAGC 9 cut(s) 29, 3019, 3856, 4208, 4498, 4556, 4687, 5005, 5078
BseYI CCCAGC 3 cut(s) 764, 900, 1123
BsgI GTGCAG 5 cut(s) 935, 1053, 2867, 4944, 5100
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 3334
BsiEI CGRYCG 1 cut(s) 3334
BsiHKAI GWGCWC 2 cut(s) 69, 3523
BsiHKCI CYCGRG 5 cut(s) 263, 454, 567, 759, 5186
BsiSI CCGG 3 cut(s) 264, 4367, 4663
BslFI GGGAC 5 cut(s) 639, 3025, 3329, 4349, 4463
BsmAI GTCTC 6 cut(s) 848, 1549, 2282, 2512, 3319, 4849
BsmFI GGGAC 5 cut(s) 639, 3025, 3329, 4349, 4463
BsoBI CYCGRG 5 cut(s) 263, 454, 567, 759, 5186
Bsp119I TTCGAA 1 cut(s) 2232
Bsp120I GGGCCC 3 cut(s) 266, 458, 4290
Bsp1286I GDGCHC 9 cut(s) 9, 69, 270, 451, 462, 1566, 1786, 3523, 4294
Bsp19I CCATGG 2 cut(s) 301, 2862
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 3934
BspMAI CTGCAG 2 cut(s) 4011, 4516
BspMI ACCTGC 2 cut(s) 427, 4948
BspOI GCTAGC 1 cut(s) 5103
BspQI GCTCTTC 2 cut(s) 380, 1791
BspT104I TTCGAA 1 cut(s) 2232
BspTI CTTAAG 5 cut(s) 848, 890, 3175, 4183, 4748
BsrDI GCAATG 4 cut(s) 397, 1134, 3899, 4732
BssECI CCNNGG 8 cut(s) 39, 263, 301, 709, 2862, 3002, 3131, 4911
BssNI GRCGYC 2 cut(s) 436, 3136
BssSI CACGAG 1 cut(s) 2799
BssT1I CCWWGG 4 cut(s) 301, 2862, 3002, 4911
Bst2BI CACGAG 1 cut(s) 2799
Bst2UI CCWGG 7 cut(s) 196, 429, 1361, 1473, 3133, 3440, 4308
Bst6I CTCTTC 4 cut(s) 380, 1791, 2148, 3866
BstACI GRCGYC 2 cut(s) 436, 3136
BstAFI CTTAAG 5 cut(s) 848, 890, 3175, 4183, 4748
BstAPI GCANNNNNTGC 2 cut(s) 341, 4931
BstBAI YACGTR 2 cut(s) 446, 3518
BstBI TTCGAA 1 cut(s) 2232
BstC8I GCNNGC 7 cut(s) 95, 337, 633, 950, 1291, 3765, 5101
BstDSI CCRYGG 4 cut(s) 39, 301, 709, 2862
BstEII GGTNACC 3 cut(s) 1523, 2672, 3700
BstENI CCTNNNNNAGG 1 cut(s) 3443
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 2 cut(s) 23, 2049
BstHHI GCGC 7 cut(s) 17, 22, 1777, 2048, 4668, 4818, 5032
BstMAI GTCTC 6 cut(s) 848, 1549, 2282, 2512, 3319, 4849
BstMCI CGRYCG 1 cut(s) 3334
BstNI CCWGG 7 cut(s) 196, 429, 1361, 1473, 3133, 3440, 4308
BstPAI GACNNNNGTC 2 cut(s) 51, 2781
BstPI GGTNACC 3 cut(s) 1523, 2672, 3700
BstSFI CTRYAG 8 cut(s) 213, 1573, 3300, 3577, 3979, 3999, 4007, 4512
BstSLI GKGCMC 4 cut(s) 270, 451, 462, 4294
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 9 cut(s) 29, 3019, 3856, 4208, 4498, 4556, 4687, 5005, 5078
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 4 cut(s) 755, 1225, 1475, 2052
BstXI CCANNNNNNTGG 1 cut(s) 1319
BstYI RGATCY 4 cut(s) 755, 1225, 1475, 2052
BstZI CGGCCG 1 cut(s) 3331
Bsu36I CCTNAGG 1 cut(s) 3483
BtgI CCRYGG 4 cut(s) 39, 301, 709, 2862
BtrI CACGTC 2 cut(s) 1386, 1968
BtsI GCAGTG 2 cut(s) 2113, 2445
BveI ACCTGC 2 cut(s) 427, 4948
Cac8I GCNNGC 7 cut(s) 95, 337, 633, 950, 1291, 3765, 5101
CaiI CAGNNNCTG 2 cut(s) 195, 1472
CciI TCATGA 1 cut(s) 3934
CfoI GCGC 7 cut(s) 17, 22, 1777, 2048, 4668, 4818, 5032
Cfr42I CCGCGG 1 cut(s) 42
Cfr9I CCCGGG 1 cut(s) 263
CseI GACGC 3 cut(s) 425, 1181, 3125
Csp6I GTAC 8 cut(s) 258, 407, 973, 978, 2124, 2859, 3180, 4004
CviQI GTAC 8 cut(s) 258, 407, 973, 978, 2124, 2859, 3180, 4004
EaeI YGGCCR 4 cut(s) 1459, 2951, 3331, 4352
EagI CGGCCG 1 cut(s) 3331
Eam1104I CTCTTC 4 cut(s) 380, 1791, 2148, 3866
EarI CTCTTC 4 cut(s) 380, 1791, 2148, 3866
EciI GGCGGA 2 cut(s) 59, 4476
Ecl136II GAGCTC 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 3331
Eco130I CCWWGG 4 cut(s) 301, 2862, 3002, 4911
Eco24I GRGCYC 7 cut(s) 9, 69, 270, 462, 1566, 1786, 4294
Eco47I GGWCC 4 cut(s) 3343, 5147, 5171, 5240
Eco47III AGCGCT 1 cut(s) 2047
Eco52I CGGCCG 1 cut(s) 3331
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 4 cut(s) 534, 884, 905, 4745
Eco72I CACGTG 2 cut(s) 446, 3518
Eco81I CCTNAGG 1 cut(s) 3483
Eco88I CYCGRG 5 cut(s) 263, 454, 567, 759, 5186
Eco91I GGTNACC 3 cut(s) 1523, 2672, 3700
EcoICRI GAGCTC 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 3443
EcoO109I RGGNCCY 5 cut(s) 458, 946, 3343, 3499, 4290
EcoO65I GGTNACC 3 cut(s) 1523, 2672, 3700
EcoRI GAATTC 2 cut(s) 2626, 4370
EcoRII CCWGG 7 cut(s) 194, 427, 1359, 1471, 3131, 3438, 4306
EcoT14I CCWWGG 4 cut(s) 301, 2862, 3002, 4911
EcoT22I ATGCAT 2 cut(s) 3818, 4381
EcoT38I GRGCYC 7 cut(s) 9, 69, 270, 462, 1566, 1786, 4294
ErhI CCWWGG 4 cut(s) 301, 2862, 3002, 4911
FalI AAGNNNNNCTT 4 cut(s) 1899, 1931, 4596, 4628
FaqI GGGAC 5 cut(s) 639, 3025, 3329, 4349, 4463
FauI CCCGC 1 cut(s) 307
FauNDI CATATG 1 cut(s) 3205
FbaI TGATCA 2 cut(s) 1165, 3637
FblI GTMKAC 3 cut(s) 2274, 2366, 2868
FriOI GRGCYC 7 cut(s) 9, 69, 270, 462, 1566, 1786, 4294
FspBI CTAG 8 cut(s) 723, 1691, 1803, 2121, 2384, 3218, 3768, 5100
GlaI GCGC 7 cut(s) 16, 21, 1776, 2047, 4667, 4817, 5031
GsaI CCCAGC 3 cut(s) 768, 904, 1127
GsuI CTGGAG 1 cut(s) 1724
HaeII RGCGCY 2 cut(s) 23, 2049
HapII CCGG 3 cut(s) 264, 4367, 4663
HgaI GACGC 3 cut(s) 425, 1181, 3125
HhaI GCGC 7 cut(s) 17, 22, 1777, 2048, 4668, 4818, 5032
Hin1I GRCGYC 2 cut(s) 436, 3136
Hin6I GCGC 7 cut(s) 15, 20, 1775, 2046, 4666, 4816, 5030
HinP1I GCGC 7 cut(s) 15, 20, 1775, 2046, 4666, 4816, 5030
HincII GTYRAC 3 cut(s) 2041, 2786, 3628
HindII GTYRAC 3 cut(s) 2041, 2786, 3628
HindIII AAGCTT 5 cut(s) 481, 540, 887, 1761, 3414
HpaI GTTAAC 1 cut(s) 2041
HpaII CCGG 3 cut(s) 264, 4367, 4663
Hpy99I CGWCG 2 cut(s) 14, 4854
Hsp92I GRCGYC 2 cut(s) 436, 3136
HspAI GCGC 7 cut(s) 15, 20, 1775, 2046, 4666, 4816, 5030
Ksp22I TGATCA 2 cut(s) 1165, 3637
KspAI GTTAAC 1 cut(s) 2041
KspI CCGCGG 1 cut(s) 42
LguI GCTCTTC 2 cut(s) 380, 1791
LmnI GCTCC 7 cut(s) 4, 72, 962, 2584, 4309, 4646, 4759
Lsp1109I GCAGC 9 cut(s) 29, 3019, 3856, 4208, 4498, 4556, 4687, 5005, 5078
MaeI CTAG 8 cut(s) 723, 1691, 1803, 2121, 2384, 3218, 3768, 5100
MfeI CAATTG 1 cut(s) 1145
MflI RGATCY 4 cut(s) 755, 1225, 1475, 2052
MhlI GDGCHC 9 cut(s) 9, 69, 270, 451, 462, 1566, 1786, 3523, 4294
MlsI TGGCCA 2 cut(s) 2953, 4354
MluNI TGGCCA 2 cut(s) 2953, 4354
MlyI GAGTC 5 cut(s) 44, 1051, 1211, 3852, 4851
MmeI TCCRAC 7 cut(s) 1517, 1902, 2049, 3064, 3335, 3560, 5238
Mox20I TGGCCA 2 cut(s) 2953, 4354
Mph1103I ATGCAT 2 cut(s) 3818, 4381
MroXI GAANNNNTTC 4 cut(s) 293, 2244, 2602, 3251
MscI TGGCCA 2 cut(s) 2953, 4354
Msp20I TGGCCA 2 cut(s) 2953, 4354
MspA1I CMGCKG 3 cut(s) 41, 1044, 1063
MspCI CTTAAG 5 cut(s) 848, 890, 3175, 4183, 4748
MspI CCGG 3 cut(s) 264, 4367, 4663
MteI GCGCNGCGC 1 cut(s) 18
MunI CAATTG 1 cut(s) 1145
MvaI CCWGG 7 cut(s) 196, 429, 1361, 1473, 3133, 3440, 4308
MvnI CGCG 1 cut(s) 41
NciI CCSGG 3 cut(s) 264, 265, 4367
NcoI CCATGG 2 cut(s) 301, 2862
NdeI CATATG 1 cut(s) 3205
NheI GCTAGC 1 cut(s) 5099
NmuCI GTSAC 6 cut(s) 1523, 2672, 3137, 3513, 3689, 5349
NsiI ATGCAT 2 cut(s) 3818, 4381
NspV TTCGAA 1 cut(s) 2232
PacI TTAATTAA 1 cut(s) 5208
PaeI GCATGC 1 cut(s) 3767
PaeR7I CTCGAG 3 cut(s) 567, 759, 5186
PagI TCATGA 1 cut(s) 3934
PciI ACATGT 2 cut(s) 1240, 3609
PciSI GCTCTTC 2 cut(s) 380, 1791
PcsI WCGNNNNNNNCGW 1 cut(s) 3336
PdmI GAANNNNTTC 4 cut(s) 293, 2244, 2602, 3251
PflMI CCANNNNNTGG 2 cut(s) 1472, 4738
PfoI TCCNGGA 2 cut(s) 194, 4365
PleI GAGTC 5 cut(s) 43, 1051, 1210, 3852, 4851
PmaCI CACGTG 2 cut(s) 446, 3518
PmlI CACGTG 2 cut(s) 446, 3518
PpsI GAGTC 5 cut(s) 43, 1051, 1210, 3852, 4851
Ppu21I YACGTR 2 cut(s) 446, 3518
PpuMI RGGWCCY 1 cut(s) 3343
PscI ACATGT 2 cut(s) 1240, 3609
PshAI GACNNNNGTC 2 cut(s) 51, 2781
PshBI ATTAAT 2 cut(s) 4869, 5208
Psp124BI GAGCTC 1 cut(s) 69
Psp1406I AACGTT 2 cut(s) 1635, 3092
Psp5II RGGWCCY 1 cut(s) 3343
Psp6I CCWGG 7 cut(s) 194, 427, 1359, 1471, 3131, 3438, 4306
PspCI CACGTG 2 cut(s) 446, 3518
PspEI GGTNACC 3 cut(s) 1523, 2672, 3700
PspFI CCCAGC 3 cut(s) 764, 900, 1123
PspGI CCWGG 7 cut(s) 194, 427, 1359, 1471, 3131, 3438, 4306
PspOMI GGGCCC 3 cut(s) 266, 458, 4290
PspPPI RGGWCCY 1 cut(s) 3343
PspXI VCTCGAGB 1 cut(s) 567
PsrI GAACNNNNNNTAC 2 cut(s) 2788, 2820
PstI CTGCAG 2 cut(s) 4011, 4516
PstNI CAGNNNCTG 2 cut(s) 195, 1472
PsuI RGATCY 4 cut(s) 755, 1225, 1475, 2052
PvuII CAGCTG 1 cut(s) 1063
RsaI GTAC 8 cut(s) 259, 408, 974, 979, 2125, 2860, 3181, 4005
RsaNI GTAC 8 cut(s) 258, 407, 973, 978, 2124, 2859, 3180, 4004
SacI GAGCTC 1 cut(s) 69
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 2 cut(s) 380, 1791
ScaI AGTACT 2 cut(s) 3181, 4005
SchI GAGTC 5 cut(s) 44, 1051, 1211, 3852, 4851
SduI GDGCHC 9 cut(s) 9, 69, 270, 451, 462, 1566, 1786, 3523, 4294
SfcI CTRYAG 8 cut(s) 213, 1573, 3300, 3577, 3979, 3999, 4007, 4512
Sfr274I CTCGAG 3 cut(s) 567, 759, 5186
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 2232
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 4 cut(s) 3343, 5147, 5171, 5240
SlaI CTCGAG 3 cut(s) 567, 759, 5186
SmaI CCCGGG 1 cut(s) 265
SphI GCATGC 1 cut(s) 3767
SspI AATATT 4 cut(s) 2812, 3880, 5358, 5365
SspMI CTAG 8 cut(s) 723, 1691, 1803, 2121, 2384, 3218, 3768, 5100
SstI GAGCTC 1 cut(s) 69
StyI CCWWGG 4 cut(s) 301, 2862, 3002, 4911
TaqII GACCGA 1 cut(s) 3708
TatI WGTACW 5 cut(s) 972, 977, 2123, 3179, 4003
TauI GCSGC 7 cut(s) 44, 1461, 1987, 3336, 3685, 3735, 4681
TseFI GTSAC 6 cut(s) 1523, 2672, 3137, 3513, 3689, 5349
TseI GCWGC 9 cut(s) 17, 3007, 3869, 4196, 4511, 4569, 4675, 5018, 5066
Tsp45I GTSAC 6 cut(s) 1523, 2672, 3137, 3513, 3689, 5349
TspGWI ACGGA 5 cut(s) 698, 1841, 3238, 3532, 4867
TspMI CCCGGG 1 cut(s) 263
Van91I CCANNNNNTGG 2 cut(s) 1472, 4738
Vha464I CTTAAG 5 cut(s) 848, 890, 3175, 4183, 4748
VpaK11BI GGWCC 4 cut(s) 3343, 5147, 5171, 5240
VspI ATTAAT 2 cut(s) 4869, 5208
XagI CCTNNNNNAGG 1 cut(s) 3443
XapI RAATTY 9 cut(s) 147, 293, 769, 1507, 1954, 2626, 3849, 4370, 4946
XbaI TCTAGA 1 cut(s) 722
XcmI CCANNNNNNNNNTGG 4 cut(s) 1469, 2075, 4497, 5029
XhoI CTCGAG 3 cut(s) 567, 759, 5186
XmaI CCCGGG 1 cut(s) 263
XmiI GTMKAC 3 cut(s) 2274, 2366, 2868
XmnI GAANNNNTTC 4 cut(s) 293, 2244, 2602, 3251
XspI CTAG 8 cut(s) 723, 1691, 1803, 2121, 2384, 3218, 3768, 5100
ZrmI AGTACT 2 cut(s) 3181, 4005
Zsp2I ATGCAT 2 cut(s) 3818, 4381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.