RchiOBHm_Chr1g0366201

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003732
Physical Location & Seq
Forward (+)
56848036 .. 56853604
5569 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59077

Sequence Viewer

Length: 3384 bp
ATGGAGCCCGACGGCGCAGCGCCGATGCAGGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTATCTTCGGATGATAATGACGAAAATCCTGTTCTCTCGGTTGCACGTTCCACTAGTACTACAGGGCCCATGCTGGTTCCACCAGTGAACAAATTCACCCATGGGAATCAAGCGGGGAAGGCTGTATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCAATCTACTTCCCAGAAGAGCAATGATGCAAACAGAGTACCCTTAAAACCTGCTACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTAATGCCCAAAAAGTTGTCTATGAATCGCACATTTATGACATCAATGGCGAATATCCGTGGAGTGAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCATGAACAAAAATATAGTGAACAGAGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGCACTGAAGGAGACTGAACTGAAGCTCAAGGAAAGTGAACTGAAGCTTAAGTCTGCCCAGCGAACTAAGGAATCAGTTACATGCAAGGATGAGAATGCTAAGGGCCTGCACAGAGATGGACCTGGTAAGTACAGTACAGGATATTCTGATGGTATGCAGACAGAACCAAAAGAGCCAGATAAAAAGCGTATAAAAGTCAGCGGTGCTTTTTCGACTCGGCTAACTACAATAAGCCCACAAGAATTACCTGTTGCAAAACCTTTATTACCGTCAAAAACCCCAGCAATGGAGGACGATACTCAATTGAACACCAGTAAGATTGATCATCTCCAAAAAGAAAATCAAGTGCGTCCAACAGAGTCGAGCATTGTAAAATGGCAAGATCCTAATGATAAAAATGTTGCTGGAATGTTGGGTAATATACATACTGGACTGAAAGAAGGTGCTGGCATCAATGCTAAATATATCCAGTCCGATGGGAGGGGTAAGCAGATGGATTCTGTTAACCAGGCTAAATCACTGGCAAATATGACGTGCATTGATTTTCCAAATAACTTGAATAGTGTGGAGTTGAATCATACAAATACTAACACAAACACAAATAGCGGCCATCCAGAACCTGGATCCTTCTTCAACAATCCAACATCAGGAAAGAATTTAATGGGAAGTGGTGACCATCAGGAAACCATATCCATTGACAAGAGACTTGAACCCTCATTCTACAGTAAATGTCAGGCACTCCTAAACAACACAAACCTCTCGAACTGTTTTGGTAATGCAAACGTTACAGGAGATGACAACATGAAGATGCAGTCATTGGTTCAAATGGAGGAAATGCTAGACAAGAATCTGGAGGATGCACAAGAGCATAGGCGAAGGTGTGAAATTGAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCGCAGAGGGCTCTTCTTGAGGCGAATGCTAGGTGTGATGTTCTTTATCGGAAAAGGGAACTATATTCTGCTGACTTCCGTGCTTACATTATTAACAATCCCAGTTTGTTATGTTCCTCAAGGCAGAATGAACAAGCTGGACTTGGGTTGGATCACCCTAATAACTTGTCTGAAAATGTGAATTTGATACCCACGTCAAGCCATCAGATGCTGCCGGACCAGAATGACTGCAATCTAGCGGTTATTGATTCCAACATCCAATGTGTTAACAGCTCTCAGATCCCGAATCCCTACCAGCATTTGAGTGGAGAAAACATTGGCTCAGAACCATGCAGTGAACCTGACGCTAGTACATCTGAGCCAGTGCCTCTTCTGGGCAATACTGGCACAGATGGAGTTTGCTCTCCATCCAATGAACCAAATGGTTCAGCAAATGAAGATGATGATACATTTTCATTCGAAAATGAATCTGTTCAACCCAATGGTGAATGCCATCTTGTAGACAAACAAAAGGAGACAGATAATGAATCAAATAGGATAATGTCTATTGACCCCAACGAGGAATCTTTACTTCTCGAAAAAGCTTTGAGGTCTACACTATTTGCAAAGCTAGGAACAAAAAATGTGTTGAAGAACAGTGTTGTATGTAATGGCACAGGGATTGCAGTGGAACGAGAGGCTGAAAATGATGCGAGAAGTGAAGAACCACAAAAAGTAAACGGCAGTTCTCCCGTCTCAGAGGTGGAGAAAAATCAACAATCTGATATTGAGGGCGTTGATGTGCATGAAAAAAGTTTCACTGAGGCTCCTCTTGAGATCCAGAGAAAGCATTCCATCGAACATTTGTCTTTGAATTCTCATTCCAGTGGATATTTTGAGGACAGATGTTCCTTTGGAGGTGACCACTCATTGACTTCTATGATCTTTTCGCCTTCCTACATCTTGAGTAGTGCTTTTGGGTATATGAAGGTTATAGACCCAAACAATGTGATGGAACATCAGGACAGAAGTCAACAGAGTGGAACTCGTGATACTAATATTGAAGAAGGTGCTTGTATAAACTCTGGTAAAGTGCAGTTTAGCAGTACCATGGTAGACACAACGAAAAAGGCTCTGGTGAAATTATGTGATAGAGAAGATGGCTCTTATACCACTGGTCCTGCTGTTGATCCCTTTTGGCCACTTTGCATGTATGAGCTACGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGTTAAGGACTACTCTACCACCGATATGTCTCCACATCAGCATGATCATTCTGAAATTGCTGGTTGTCAGGTTGGACAAACGTTTTGCAAAGAAAAGTGTGATGGTTCAGCAAAAGTTCCCTGGCGTCACAATTGTATGACTTTACCAACTTACCTTGTTGGCTTAAGTACTCTAAAAGCTGATCTGCATTCATATGATTCTGTTCTAGCACGGAGAAATGGTGAATGCTGGAAGAAGTGTTTCAGCCTTTTCTTAGCATTGTCAAAGTCGTTTCAAAAAGATTTTCCTACAGATGGACCGGTCTCGCATGGAAATGACGGCCGCATTGAGGTCCCTGTGAGTTGGAACAGACAGTCATCGTATTTCCAGAGTAGAAATAGCGGAGTGGTTTGTTTATTGATTTCCTCTTTTCACTCATTCATTTGCCTTATCTTGCATGCTTGTATTGTTCCTATACTTAGTGTGTTGCATTATCTAGTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1127

Amino Acids

124.1

Weight (kDa)

5.76

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 948 - 968 9e-10 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 19, 322
AccB7I CCANNNNNTGG 1 cut(s) 1358
AccI GTMKAC 3 cut(s) 2160, 2252, 2754
AccII CGCG 1 cut(s) 41
AciI CCGC 9 cut(s) 39, 41, 44, 209, 939, 1344, 1898, 3220, 3279
AclI AACGTT 2 cut(s) 1521, 2978
AclWI GGATC 8 cut(s) 658, 1115, 1356, 1369, 1818, 1933, 2470, 2822
AcoI YGGCCR 3 cut(s) 1345, 2837, 3217
AcsI RAATTY 6 cut(s) 188, 613, 664, 1393, 1840, 2512
AcuI CTGAAG 4 cut(s) 429, 764, 779, 800
AcvI CACGTG 1 cut(s) 341
AcyI GRCGYC 2 cut(s) 331, 3022
AfaI GTAC 7 cut(s) 154, 303, 869, 874, 2011, 2746, 3067
AflII CTTAAG 2 cut(s) 785, 3061
AgeI ACCGGT 1 cut(s) 3196
AhlI ACTAGT 1 cut(s) 149
AjiI CACGTC 2 cut(s) 1272, 1854
AjnI CCWGG 5 cut(s) 322, 859, 1245, 1357, 3017
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 6 cut(s) 743, 1435, 2168, 2398, 2931, 3205
AlwI GGATC 8 cut(s) 658, 1115, 1356, 1369, 1818, 1933, 2470, 2822
AlwNI CAGNNNCTG 2 cut(s) 1358, 1870
Ama87I CYCGRG 3 cut(s) 349, 462, 654
AoxI GGCC 6 cut(s) 161, 353, 841, 1345, 2837, 3217
ApaI GGGCCC 2 cut(s) 165, 357
ApeKI GCWGC 3 cut(s) 17, 1870, 2893
ApoI RAATTY 6 cut(s) 188, 613, 664, 1393, 1840, 2512
ArsI GACNNNNNNTTYG 2 cut(s) 2964, 2996
AsiGI ACCGGT 1 cut(s) 3196
Asp700I GAANNNNTTC 4 cut(s) 188, 2130, 2488, 3137
AspLEI GCGC 3 cut(s) 17, 22, 1663
AsuHPI GGTGA 7 cut(s) 184, 1421, 1805, 2156, 2570, 2788, 3131
AsuII TTCGAA 1 cut(s) 2118
AvaI CYCGRG 3 cut(s) 349, 462, 654
AvaII GGWCC 5 cut(s) 857, 1876, 2816, 3194, 3229
BaeGI GKGCMC 3 cut(s) 165, 346, 357
BaeI ACNNNNGTAYC 2 cut(s) 1838, 1871
BalI TGGCCA 1 cut(s) 2839
BamHI GGATCC 1 cut(s) 1361
BanII GRGCYC 5 cut(s) 9, 69, 165, 357, 1672
BauI CACGAG 1 cut(s) 2685
BbrPI CACGTG 1 cut(s) 341
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 29, 1857, 2905
BceAI ACGGC 3 cut(s) 28, 2395, 3232
BcgI CGANNNNNNTGC 4 cut(s) 635, 669, 2850, 2884
BciT130I CCWGG 5 cut(s) 324, 861, 1247, 1359, 3019
BclI TGATCA 2 cut(s) 1060, 2941
BcoDI GTCTC 6 cut(s) 743, 1435, 2168, 2398, 2931, 3205
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 9 cut(s) 150, 618, 1577, 1689, 1895, 2007, 2270, 3104, 3374
BfmI CTRYAG 3 cut(s) 156, 1459, 3186
BfoI RGCGCY 1 cut(s) 23
BfrI CTTAAG 2 cut(s) 785, 3061
BfuAI ACCTGC 2 cut(s) 19, 322
BisI GCNGC 6 cut(s) 18, 42, 1345, 1871, 2894, 3220
BlsI GCNGC 6 cut(s) 19, 43, 1346, 1872, 2895, 3221
BmcAI AGTACT 2 cut(s) 154, 3067
Bme1390I CCNGG 5 cut(s) 324, 861, 1247, 1359, 3019
Bme18I GGWCC 5 cut(s) 857, 1876, 2816, 3194, 3229
BmeT110I CYCGRG 3 cut(s) 349, 462, 654
BmgBI CACGTC 2 cut(s) 1272, 1854
BmiI GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1363, 2466, 3231
BmrFI CCNGG 5 cut(s) 324, 861, 1247, 1359, 3019
BmrI ACTGGG 1 cut(s) 1755
BmsI GCATC 7 cut(s) 15, 280, 1197, 1536, 1585, 1857, 2338
BmuI ACTGGG 1 cut(s) 1755
BoxI GACNNNNGTC 1 cut(s) 2667
BplI GAGNNNNNCTC 2 cut(s) 2668, 2700
BpmI CTGGAG 1 cut(s) 1610
Bpu10I CCTNAGC 1 cut(s) 837
Bpu14I TTCGAA 1 cut(s) 2118
BpuEI CTTGAG 5 cut(s) 749, 1697, 1762, 2492, 2623
BsaAI YACGTR 1 cut(s) 341
BsaHI GRCGYC 2 cut(s) 331, 3022
BsaI GGTCTC 1 cut(s) 3205
BsaJI CCNNGG 6 cut(s) 39, 196, 604, 2748, 2888, 3017
BsaWI WCCGGW 1 cut(s) 3196
BsaXI ACNNNNNCTCC 4 cut(s) 2449, 2479, 3103, 3133
Bse118I RCCGGY 1 cut(s) 3196
Bse3DI GCAATG 2 cut(s) 292, 1029
BseBI CCWGG 5 cut(s) 324, 861, 1247, 1359, 3019
BseDI CCNNGG 6 cut(s) 39, 196, 604, 2748, 2888, 3017
BseGI GGATG 7 cut(s) 112, 332, 832, 1348, 1600, 1914, 2066
BseMI GCAATG 2 cut(s) 292, 1029
BseMII CTCAG 6 cut(s) 396, 1949, 1995, 2007, 2409, 2451
BseRI GAGGAG 1 cut(s) 2457
BseSI GKGCMC 3 cut(s) 165, 346, 357
BseX3I CGGCCG 1 cut(s) 3217
BseXI GCAGC 3 cut(s) 29, 1857, 2905
BseYI CCCAGC 2 cut(s) 795, 1018
BsgI GTGCAG 2 cut(s) 830, 2753
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 3220
BshFI GGCC 6 cut(s) 163, 355, 843, 1347, 2839, 3219
BshTI ACCGGT 1 cut(s) 3196
BsiEI CGRYCG 1 cut(s) 3220
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 3 cut(s) 349, 462, 654
BsiSI CCGG 2 cut(s) 1874, 3197
BslFI GGGAC 2 cut(s) 534, 3215
BsmAI GTCTC 6 cut(s) 743, 1435, 2168, 2398, 2931, 3205
BsmBI CGTCTC 1 cut(s) 2398
BsmFI GGGAC 2 cut(s) 534, 3215
BsmI GAATGC 7 cut(s) 475, 838, 1690, 2153, 2488, 3085, 3128
BsnI GGCC 6 cut(s) 163, 355, 843, 1347, 2839, 3219
Bso31I GGTCTC 1 cut(s) 3205
BsoBI CYCGRG 3 cut(s) 349, 462, 654
Bsp119I TTCGAA 1 cut(s) 2118
Bsp120I GGGCCC 2 cut(s) 161, 353
Bsp1286I GDGCHC 6 cut(s) 9, 69, 165, 346, 357, 1672
Bsp19I CCATGG 2 cut(s) 196, 2748
BspACI CCGC 9 cut(s) 39, 41, 44, 209, 939, 1344, 1898, 3220, 3279
BspANI GGCC 6 cut(s) 163, 355, 843, 1347, 2839, 3219
BspCNI CTCAG 6 cut(s) 395, 1948, 1994, 2008, 2408, 2452
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1363, 2466, 3231
BspMI ACCTGC 2 cut(s) 19, 322
BspPI GGATC 8 cut(s) 658, 1115, 1356, 1369, 1818, 1933, 2470, 2822
BspQI GCTCTTC 2 cut(s) 275, 1677
BspT104I TTCGAA 1 cut(s) 2118
BspTI CTTAAG 2 cut(s) 785, 3061
BspTNI GGTCTC 1 cut(s) 3205
BsrDI GCAATG 2 cut(s) 292, 1029
BsrFI RCCGGY 1 cut(s) 3196
BssAI RCCGGY 1 cut(s) 3196
BssECI CCNNGG 6 cut(s) 39, 196, 604, 2748, 2888, 3017
BssNI GRCGYC 2 cut(s) 331, 3022
BssSI CACGAG 1 cut(s) 2685
BssT1I CCWWGG 3 cut(s) 196, 2748, 2888
Bst2BI CACGAG 1 cut(s) 2685
Bst2UI CCWGG 5 cut(s) 324, 861, 1247, 1359, 3019
Bst4CI ACNGT 7 cut(s) 395, 872, 1008, 1463, 1505, 2297, 3252
Bst6I CTCTTC 3 cut(s) 275, 1677, 2034
BstACI GRCGYC 2 cut(s) 331, 3022
BstAFI CTTAAG 2 cut(s) 785, 3061
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 2118
BstC8I GCNNGC 6 cut(s) 95, 232, 528, 845, 1186, 3336
BstDSI CCRYGG 4 cut(s) 39, 196, 604, 2748
BstEII GGTNACC 2 cut(s) 1409, 2558
BstF5I GGATG 7 cut(s) 112, 332, 832, 1348, 1600, 1914, 2066
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 3 cut(s) 17, 22, 1663
BstMAI GTCTC 6 cut(s) 743, 1435, 2168, 2398, 2931, 3205
BstMCI CGRYCG 1 cut(s) 3220
BstMWI GCNNNNNNNGC 5 cut(s) 215, 236, 1646, 1667, 2043
BstNI CCWGG 5 cut(s) 324, 861, 1247, 1359, 3019
BstNSI RCATGY 4 cut(s) 822, 2851, 2900, 3338
BstPAI GACNNNNGTC 1 cut(s) 2667
BstPI GGTNACC 2 cut(s) 1409, 2558
BstSCI CCNGG 5 cut(s) 322, 859, 1245, 1357, 3017
BstSFI CTRYAG 3 cut(s) 156, 1459, 3186
BstSLI GKGCMC 3 cut(s) 165, 346, 357
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 29, 1857, 2905
BstX2I RGATCY 5 cut(s) 650, 1120, 1361, 1938, 2475
BstXI CCANNNNNNTGG 1 cut(s) 1214
BstYI RGATCY 5 cut(s) 650, 1120, 1361, 1938, 2475
BstZI CGGCCG 1 cut(s) 3217
BsuRI GGCC 6 cut(s) 163, 355, 843, 1347, 2839, 3219
BtgI CCRYGG 4 cut(s) 39, 196, 604, 2748
BtrI CACGTC 2 cut(s) 1272, 1854
BtsCI GGATG 7 cut(s) 112, 332, 832, 1348, 1600, 1914, 2066
BtsI GCAGTG 2 cut(s) 1999, 2331
BveI ACCTGC 2 cut(s) 19, 322
Cac8I GCNNGC 6 cut(s) 95, 232, 528, 845, 1186, 3336
CaiI CAGNNNCTG 2 cut(s) 1358, 1870
CfoI GCGC 3 cut(s) 17, 22, 1663
Cfr10I RCCGGY 1 cut(s) 3196
Cfr42I CCGCGG 1 cut(s) 42
CseI GACGC 4 cut(s) 320, 1076, 2012, 3011
CsiI ACCWGGT 1 cut(s) 859
Csp6I GTAC 7 cut(s) 153, 302, 868, 873, 2010, 2745, 3066
CspAI ACCGGT 1 cut(s) 3196
CviQI GTAC 7 cut(s) 153, 302, 868, 873, 2010, 2745, 3066
EaeI YGGCCR 3 cut(s) 1345, 2837, 3217
EagI CGGCCG 1 cut(s) 3217
Eam1104I CTCTTC 3 cut(s) 275, 1677, 2034
EarI CTCTTC 3 cut(s) 275, 1677, 2034
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 3217
Eco130I CCWWGG 3 cut(s) 196, 2748, 2888
Eco24I GRGCYC 5 cut(s) 9, 69, 165, 357, 1672
Eco31I GGTCTC 1 cut(s) 3205
Eco47I GGWCC 5 cut(s) 857, 1876, 2816, 3194, 3229
Eco52I CGGCCG 1 cut(s) 3217
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 4 cut(s) 429, 764, 779, 800
Eco72I CACGTG 1 cut(s) 341
Eco88I CYCGRG 3 cut(s) 349, 462, 654
Eco91I GGTNACC 2 cut(s) 1409, 2558
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 4 cut(s) 161, 353, 841, 3229
EcoO65I GGTNACC 2 cut(s) 1409, 2558
EcoRI GAATTC 2 cut(s) 613, 2512
EcoRII CCWGG 5 cut(s) 322, 859, 1245, 1357, 3017
EcoT14I CCWWGG 3 cut(s) 196, 2748, 2888
EcoT38I GRGCYC 5 cut(s) 9, 69, 165, 357, 1672
ErhI CCWWGG 3 cut(s) 196, 2748, 2888
Esp3I CGTCTC 1 cut(s) 2398
FalI AAGNNNNNCTT 2 cut(s) 1785, 1817
FaqI GGGAC 2 cut(s) 534, 3215
FauI CCCGC 1 cut(s) 202
FauNDI CATATG 1 cut(s) 3091
FbaI TGATCA 2 cut(s) 1060, 2941
FblI GTMKAC 3 cut(s) 2160, 2252, 2754
Fnu4HI GCNGC 6 cut(s) 18, 42, 1345, 1871, 2894, 3220
FokI GGATG 7 cut(s) 119, 339, 839, 1335, 1607, 1901, 2053
FriOI GRGCYC 5 cut(s) 9, 69, 165, 357, 1672
Fsp4HI GCNGC 6 cut(s) 18, 42, 1345, 1871, 2894, 3220
FspBI CTAG 9 cut(s) 150, 618, 1577, 1689, 1895, 2007, 2270, 3104, 3374
GlaI GCGC 3 cut(s) 16, 21, 1662
GluI GCNGC 6 cut(s) 18, 42, 1345, 1871, 2894, 3220
GsaI CCCAGC 2 cut(s) 799, 1022
GsuI CTGGAG 1 cut(s) 1610
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 6 cut(s) 163, 355, 843, 1347, 2839, 3219
HapII CCGG 2 cut(s) 1874, 3197
HgaI GACGC 4 cut(s) 320, 1076, 2012, 3011
HhaI GCGC 3 cut(s) 17, 22, 1663
Hin1I GRCGYC 2 cut(s) 331, 3022
Hin6I GCGC 3 cut(s) 15, 20, 1661
HinP1I GCGC 3 cut(s) 15, 20, 1661
HincII GTYRAC 3 cut(s) 1243, 1927, 2672
HindII GTYRAC 3 cut(s) 1243, 1927, 2672
HindIII AAGCTT 5 cut(s) 376, 435, 782, 1647, 2241
HpaI GTTAAC 2 cut(s) 1243, 1927
HpaII CCGG 2 cut(s) 1874, 3197
HphI GGTGA 7 cut(s) 184, 1421, 1805, 2156, 2570, 2788, 3131
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 7 cut(s) 395, 872, 1008, 1463, 1505, 2297, 3252
HpyCH4IV ACGT 6 cut(s) 142, 340, 1271, 1521, 1853, 2978
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 236, 1646, 1667, 2043
HpySE526I ACGT 6 cut(s) 142, 340, 1271, 1521, 1853, 2978
Hsp92I GRCGYC 2 cut(s) 331, 3022
HspAI GCGC 3 cut(s) 15, 20, 1661
Ksp22I TGATCA 2 cut(s) 1060, 2941
KspAI GTTAAC 2 cut(s) 1243, 1927
KspI CCGCGG 1 cut(s) 42
LguI GCTCTTC 2 cut(s) 275, 1677
LmnI GCTCC 4 cut(s) 4, 64, 72, 2470
Lsp1109I GCAGC 3 cut(s) 29, 1857, 2905
LweI GCATC 7 cut(s) 15, 280, 1197, 1536, 1585, 1857, 2338
MabI ACCWGGT 1 cut(s) 859
MaeI CTAG 9 cut(s) 150, 618, 1577, 1689, 1895, 2007, 2270, 3104, 3374
MaeII ACGT 6 cut(s) 142, 340, 1271, 1521, 1853, 2978
MaeIII GTNAC 5 cut(s) 814, 1409, 1522, 2558, 3023
MfeI CAATTG 2 cut(s) 1040, 3028
MflI RGATCY 5 cut(s) 650, 1120, 1361, 1938, 2475
MhlI GDGCHC 6 cut(s) 9, 69, 165, 346, 357, 1672
MlsI TGGCCA 1 cut(s) 2839
MluNI TGGCCA 1 cut(s) 2839
MlyI GAGTC 3 cut(s) 44, 946, 1106
MmeI TCCRAC 6 cut(s) 1115, 1403, 1788, 1935, 2950, 3221
Mox20I TGGCCA 1 cut(s) 2839
MroXI GAANNNNTTC 4 cut(s) 188, 2130, 2488, 3137
MscI TGGCCA 1 cut(s) 2839
MseI TTAA 9 cut(s) 308, 786, 1242, 1397, 1644, 1752, 1926, 2901, 3062
Msp20I TGGCCA 1 cut(s) 2839
MspA1I CMGCKG 2 cut(s) 41, 939
MspCI CTTAAG 2 cut(s) 785, 3061
MspI CCGG 2 cut(s) 1874, 3197
MspR9I CCNGG 5 cut(s) 324, 861, 1247, 1359, 3019
MteI GCGCNGCGC 1 cut(s) 18
MunI CAATTG 2 cut(s) 1040, 3028
Mva1269I GAATGC 7 cut(s) 475, 838, 1690, 2153, 2488, 3085, 3128
MvaI CCWGG 5 cut(s) 324, 861, 1247, 1359, 3019
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 5 cut(s) 215, 236, 1646, 1667, 2043
NcoI CCATGG 2 cut(s) 196, 2748
NdeI CATATG 1 cut(s) 3091
NlaIV GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1363, 2466, 3231
NmeAIII GCCGAG 1 cut(s) 934
NmuCI GTSAC 3 cut(s) 1409, 2558, 3023
NspI RCATGY 4 cut(s) 822, 2851, 2900, 3338
NspV TTCGAA 1 cut(s) 2118
PaeI GCATGC 1 cut(s) 3338
PaeR7I CTCGAG 2 cut(s) 462, 654
PciSI GCTCTTC 2 cut(s) 275, 1677
PctI GAATGC 7 cut(s) 475, 838, 1690, 2153, 2488, 3085, 3128
PdmI GAANNNNTTC 4 cut(s) 188, 2130, 2488, 3137
PflMI CCANNNNNTGG 1 cut(s) 1358
PinAI ACCGGT 1 cut(s) 3196
PkrI GCNGC 6 cut(s) 19, 43, 1346, 1872, 2895, 3221
PleI GAGTC 3 cut(s) 43, 946, 1105
PmaCI CACGTG 1 cut(s) 341
PmlI CACGTG 1 cut(s) 341
PpsI GAGTC 3 cut(s) 43, 946, 1105
Ppu21I YACGTR 1 cut(s) 341
PpuMI RGGWCCY 1 cut(s) 3229
PshAI GACNNNNGTC 1 cut(s) 2667
Psp124BI GAGCTC 1 cut(s) 69
Psp1406I AACGTT 2 cut(s) 1521, 2978
Psp5II RGGWCCY 1 cut(s) 3229
Psp6I CCWGG 5 cut(s) 322, 859, 1245, 1357, 3017
PspCI CACGTG 1 cut(s) 341
PspEI GGTNACC 2 cut(s) 1409, 2558
PspFI CCCAGC 2 cut(s) 795, 1018
PspGI CCWGG 5 cut(s) 322, 859, 1245, 1357, 3017
PspN4I GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1363, 2466, 3231
PspOMI GGGCCC 2 cut(s) 161, 353
PspPPI RGGWCCY 1 cut(s) 3229
PspXI VCTCGAGB 1 cut(s) 462
PsrI GAACNNNNNNTAC 2 cut(s) 2674, 2706
PstNI CAGNNNCTG 2 cut(s) 1358, 1870
PsuI RGATCY 5 cut(s) 650, 1120, 1361, 1938, 2475
RsaI GTAC 7 cut(s) 154, 303, 869, 874, 2011, 2746, 3067
RsaNI GTAC 7 cut(s) 153, 302, 868, 873, 2010, 2745, 3066
SacI GAGCTC 1 cut(s) 69
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 2 cut(s) 275, 1677
SaqAI TTAA 9 cut(s) 308, 786, 1242, 1397, 1644, 1752, 1926, 2901, 3062
SatI GCNGC 6 cut(s) 18, 42, 1345, 1871, 2894, 3220
ScaI AGTACT 2 cut(s) 154, 3067
SchI GAGTC 3 cut(s) 44, 946, 1106
ScrFI CCNGG 5 cut(s) 324, 861, 1247, 1359, 3019
SduI GDGCHC 6 cut(s) 9, 69, 165, 346, 357, 1672
SexAI ACCWGGT 1 cut(s) 859
SfaNI GCATC 7 cut(s) 15, 280, 1197, 1536, 1585, 1857, 2338
SfcI CTRYAG 3 cut(s) 156, 1459, 3186
Sfr274I CTCGAG 2 cut(s) 462, 654
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 2118
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 5 cut(s) 857, 1876, 2816, 3194, 3229
SlaI CTCGAG 2 cut(s) 462, 654
SmlI CTYRAG 9 cut(s) 462, 654, 764, 785, 1676, 1777, 2471, 2602, 3061
SmoI CTYRAG 9 cut(s) 462, 654, 764, 785, 1676, 1777, 2471, 2602, 3061
SpeI ACTAGT 1 cut(s) 149
SphI GCATGC 1 cut(s) 3338
SsiI CCGC 9 cut(s) 39, 41, 44, 209, 939, 1344, 1898, 3220, 3279
SspI AATATT 1 cut(s) 2698
SspMI CTAG 9 cut(s) 150, 618, 1577, 1689, 1895, 2007, 2270, 3104, 3374
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 5 cut(s) 322, 859, 1245, 1357, 3017
StyI CCWWGG 3 cut(s) 196, 2748, 2888
TaaI ACNGT 7 cut(s) 395, 872, 1008, 1463, 1505, 2297, 3252
TaiI ACGT 6 cut(s) 145, 343, 1274, 1524, 1856, 2981
TaqI TCGA 9 cut(s) 33, 463, 655, 950, 1100, 1499, 2118, 2235, 2496
TatI WGTACW 5 cut(s) 152, 867, 872, 2009, 3065
TauI GCSGC 3 cut(s) 44, 1347, 3222
Tru1I TTAA 9 cut(s) 308, 786, 1242, 1397, 1644, 1752, 1926, 2901, 3062
Tru9I TTAA 9 cut(s) 308, 786, 1242, 1397, 1644, 1752, 1926, 2901, 3062
TseFI GTSAC 3 cut(s) 1409, 2558, 3023
TseI GCWGC 3 cut(s) 17, 1870, 2893
Tsp45I GTSAC 3 cut(s) 1409, 2558, 3023
TspGWI ACGGA 3 cut(s) 593, 1727, 3124
Van91I CCANNNNNTGG 1 cut(s) 1358
Vha464I CTTAAG 2 cut(s) 785, 3061
VpaK11BI GGWCC 5 cut(s) 857, 1876, 2816, 3194, 3229
XapI RAATTY 6 cut(s) 188, 613, 664, 1393, 1840, 2512
XbaI TCTAGA 1 cut(s) 617
XceI RCATGY 4 cut(s) 822, 2851, 2900, 3338
XcmI CCANNNNNNNNNTGG 2 cut(s) 1355, 1961
XhoI CTCGAG 2 cut(s) 462, 654
XmiI GTMKAC 3 cut(s) 2160, 2252, 2754
XmnI GAANNNNTTC 4 cut(s) 188, 2130, 2488, 3137
XspI CTAG 9 cut(s) 150, 618, 1577, 1689, 1895, 2007, 2270, 3104, 3374
ZrmI AGTACT 2 cut(s) 154, 3067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.