Rh1CG313500

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003732
Physical Location & Seq
Reverse (-)
58761971 .. 58770219
8249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG313500.1

Sequence Viewer

Length: 5199 bp
ATGGAGCCCGACGGCGCAGCGCCGATGCAAGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCCGATGATAATGACGAAAATCCTGTTTTCTCGGTTGCACGTTCCACTGGTACTCCCGGGCCCATGCTGGTTCCACCAGTGAACAAATTCACCCATGGGAATCAAGCGGGGAAGGCTGTATCTCCTGCAAGCTCTACTGATATTCAGTGCCAAACCTCCAAGCAACCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCGTTAAAACCTGCTACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAAAGGAGCGTGGGAAACTAAAAGCTTCACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTTATGCCCAAAAAGTTGTCTATGAATCGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCATGAACAAAAATATAGTGAACAGAGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGCACTTAAGGAGACTGAACTGAAGCTCAAGGAAAGTGAACTGAAGCTTAAGTCTGCCCAGCGAACTAAGGAATCAGTTACATGCAAGGATGAGAATGCTAAGGGCCTGCACAGAGATGGAGCTGGTAAGTACAGTACAGGATATTCTGATGGTATGCAGACAGAACCAAAAGAGCCAGATAAAAAGCGTATAAAAGTCAGCGGTGCTTTTTCAACTCAGCTAACTGCACTAAGCCCACAAGAATTACCTGTTGCAAAACCTTTATTACCATCAAAAACCCCAGCAATGGAGGACAATACTCAATTGAACACCAGTAAGATTGATTATCTCCAAAAAGAAAATCAAGTGCGTCCAACAGAGTCGAGCATTGTAAAATGGCAAGATCCTAATGATAAACATGTTGCTGGAATGTTGGGAAATATACATACTGGACTGAAAGATGGTGCTGGCATCAATGCTAGATATATCCAGTCTGATGGGAGGGGTAAGCAGATGGATTCTGTTGTTACACCAAACCAGGGTAAATCACTGGCAAATATGACGTGCATTGATTTTCCAAATAACTTGAATAGTGTGGAGTTGAATCATACAAATACTAACACAAACACAAATAGCGGCCATCCAGAACCTGGATCCTTCTTAAACAATCCAACATCAGGAAAGAATTTAATGGGAAGTGGTGACCATCAGGAAACCATATCCATTGACAAGAGACTTGAGCCCTCATTCTACAGTAAATGTCAGGCACTCCTAAACAACACAAACCTCTCGAACTGTTTTGGTAATGCAAACGTTATAGGAGATGACAACATGAAGATGCAGTCATTGGTTCAAATGGAGGAAATGCTAGACAAGAATCTGGAGGAAGCACAAGAGCATAGGCGAAGGTGTGAAATTGAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCGCAGAGGGCTCTTCTTGAGGCGAATGCTACGTGTGATGTTCTTTATCGGAAAAGGGAACTATATTCTGCCGACTTCCGTGCTTATGTTATTAACAATCCCAGTTTGTTATGTTCCTCAAGGCAGAACGAACAAGCTGGACTTGGGTTGGATCACCCTAATAACTTGTCTGAAAATGTGAATTTGATACCCACGTCAAGCCATCAGATGCCGCCGGTCCAGAATGACTGCAATCTAGCGGTTATTGATTCCAACATCCAATGCGTTAACAGCGCTCAGATCCCGAATCCCTACCAGCATTTGAGTGGAGAAAACATTGGCTCAGAACCAGGCAGTGAACCTGACGCTAGTACATCTGAGCCAGTGCCTCTTCTGGGCAATACTGGCACAGATGGAGTTTGCTCTCCATCCAATGAACCAAATGGTTCAGCAAATGAAGATGATGATACATTTTCATTCGAAAATGAATCTGTTCAACCCAATGGTGAATGCCATCTTGTAGACAAACAAAAGGAGACAGATAATGAATCAAATAGGATAATGTCTATTGACCCCAACGAGGAATCTTTACTTCTCGAAAAAGCTTTGAGGTCTACACTATTTGCAAAGCTAGGAACAAAAAATGTGTCGAAGAACAGTGTTGTATGTAATGGCACAGGGATTGCAGTGGAACGAGAGGCTGAAAATGATGCAAGAAGTGAAGAACCACAAAAAGTAAACGGGAGTTCTCCCGTCTCAGAGGTGGAGAAAAATCAACAATCTGATATTGAAGGCGTTGATGTGCATGAAAAAAAATGTTCCTTTGGAGGTGACCACTCATTGACTTCTATGATCTTTTCGCCTTCCTACATCTTGAGTAGTGCTTTTGGGTATATGAAGGTTATAGACCCAAACAATGTGATGGAACATCAGGACAGAAGTCAACAGAGTGGAGCTCGTGATACTAATATTGAAGAAGGTGCTTGTATAAACTCTGGTAAAGTGCAGTTTAGCAGTACCATGGTAGACACAACGAAAAAGGCTCTGGTGAAATTATGTGATAGAGAATATGGCTCTTATACCACTGGTCCTGCTGTTGATCCCTTTTGGCCACTTTGCATGTATGAGCTACGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGTTAAGGACTACTCTACCACCGATATGTCTCCACATCAGCATGATAATTCTGAAATTGCTGGTTGTCAGGTTGGACAAACGTTTTGCAAAGAAAAGTGTGATGGTTCAGCAAAAGTTCCCTGGCGTCACAATTTTACGACTTTACCAACTTACCTTGTTGGCTTAAGTACTCTAAAAGCTGATCTGCATTCATATGATTCTGTTCTAGCACGGAGAAATGGTGAATGCTGGAAGAAGTGTTTCAGCCTTTTCTTAGCATTGTCAAAGTCGTTTCAAAAAGATTTTCCTACAGATGGGCCAGTCTCGCATGGAAATGACGGCCGCATCGAGGTCCCTGTGAGTTGGAACAGACAGTCATCATATTTCCAGAGTAGAAATAGCGGAGTGAATCAACCGGATCAAGCTTTGGCTGACAATGAGCAATACCTGGAAAAGGCTCTTTTAATTTTCAGTCAAGAGGTCAATACACTTGAGGGTATGAAAAAGGCTCTTCCTGTATTGTCACGTGCTCTTGAGGCTGATCCAACATCCGTAGTTCTCTGGGTCTTTTATCTGCTTATTTACTATAGCAATATGAAGTCAGTAGGGAAGGATGACATGTTCTCTTGTGCGGTCAACTACAATGATCAATCTTATGAACTTTGGATTATGTTCATCAACAGTCGGGTGCGGCTAAGTGACCGATTGGTTACCTACGATCTTGCCTTCTCAGCACTGTGCCCCCGCCATGCTTCTTCTGCCAAAGATAAAGTGCATGCTAGTGCTTGTATCTTAGACTTAGTTTTGCAAATGGTGGATTGTCTATGCATGTCTGGGAATGTTGAGAGGGCCATTCAGAAAATTTGTGGACTCTTCTCTGCTGCCACAAATATTTATGACCCCGATTCTCCATTGCTTACTGATATGCCCAAATGCCTAACAAGTCATGACAAATGTATTTTGGGGGTATGTTGTGTTTACTTGGTTATCTATAGGAAACTTCCTGATGCTGTAGTACTGCAGTTTGAATGTCAGAAAGAACTGTTTGCAATAGAATGGCCTTCTATTGAATTAACAGATAATGAAAAGCAGAGGGCTGTCAAACTGATGGAAGCAGTAGAAGATTCTGTATGTCAATCGCTGGATAAAAGTGATTTTAATCTCAGTTTGGCACATTTTTTTGCTCTGAGCCACTTAAGGTGCATGGCAGCTATTGACAGCTTAGAAAGGTGTAGTAATCTTCTGGGTAAATATCTTAAAATGTTCCCGTCCTGCCTAGAGCTTGTTCTAATATCGGCAAGGGCCCAAAAACATGCTCCTGGTGATTCGCTTTTTGACGGGTTTGAGGAAGCCCTAAATAATTGGCCAAAAGAAGTCCCCGGAATTCAATGCATCTGGAATCAGTATGTTGTATATGCCTTTCAGAAAGGACAATTTGATTTTGGTAAAGAACTTATAGGCCGTTGGTTTCATTCTTTTTGGCAAGTTCATTGTATTCGAAATGGTACATTAGATGACATGGAGTGTGATAACTCAGATGGCTCACTAGGATTGGCTTCGGATTCAGTTCTGCAGACACTTAATACTGATTCTAAGCAGATGGACGTAATGTTTGGATATCTTAATCTCTCGCTGTATAAGTTAATCCAAAATGATCAGATTGAAGCTCGCTTAGCCCTCGAGAGGGCATTGAAGGCTGCTGTTCCAGAATATTCAAAGCATTGCATGAGGGAGCATGCATTATTTATGCTAAGTGAGGAATCAGGATTTAAGGAGAGTGGTTGTCCTAGTGGCATGGAGAAGATTTTGAAACGTTACATAGGTGATGCCGAAGTTTTCCCTTCATCTGAGCCATTATCTAGGCAGTTTATTGCTGACATCAAGAAGCCAAGAGTACGACAGCTGGTTAGTAGCGAATTCAGTCCATTCTCATCTGATTTTGCTCTTGTAAATTCAGTTCTTGAAGTGTTGTATGGACCATCTCTTTTACCGAAAAAGACTGGTGAGACAAAATGTCTGGTGGATTTTGTTGAAGCCATCTTGGATATAACTCCATCCAACTATCAGTTAGCTATTTCTGTCTGTAAGCTGTTAATTACTGGCAACAATGCAACTGATATTACTTCAGTCAGTGTTTTGTTCTGGGCTAGCTCAAACTTGGTCAGTGCAATCTTTCGTGCTGTCCCAATTCCGCCAGAGTATGTATGGGTAGAAGCTGCAGACATATTGGGCAATATGGTGAATGTTGAGGTTATTTCTGAGAGGTTTTATAAGAGAGCTTTATCTGTATATCCTTTCTCTGTCAAGTTGTGGAAATCCTATTACATGCTTTCTATGATGACTACAGGAAATATGAACACTGTTGTGGAAACAGCAAAGGAAAAAGGTATAGAACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1732

Amino Acids

191.91

Weight (kDa)

5.46

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 921 - 941 1.4e-09 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 5067
Acc36I ACCTGC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 1367
AccI GTMKAC 3 cut(s) 2169, 2261, 2673
AccII CGCG 1 cut(s) 41
AclI AACGTT 3 cut(s) 1530, 2897, 4609
AclWI GGATC 9 cut(s) 658, 1115, 1365, 1378, 1827, 1942, 2741, 3222, 3332
AcoI YGGCCR 4 cut(s) 1354, 2756, 3136, 4160
AcsI RAATTY 8 cut(s) 188, 664, 1402, 1849, 3657, 4179, 4712, 4747
AcuI CTGAAG 4 cut(s) 429, 779, 800, 4905
AcvI CACGTG 2 cut(s) 341, 3323
AcyI GRCGYC 2 cut(s) 331, 2941
AfeI AGCGCT 1 cut(s) 1942
AflII CTTAAG 4 cut(s) 743, 785, 2980, 3991
AflIII ACRYGT 3 cut(s) 1135, 1700, 3414
AhdI GACNNNNNGTC 1 cut(s) 4809
AjiI CACGTC 2 cut(s) 1281, 1863
AjnI CCWGG 7 cut(s) 322, 1254, 1366, 1996, 2936, 3243, 4114
AleI CACNNNNGTG 1 cut(s) 5159
AloI GAACNNNNNNTCC 2 cut(s) 3401, 3433
Alw21I GWGCWC 4 cut(s) 69, 99, 2605, 3328
Alw26I GTCTC 7 cut(s) 743, 1444, 2177, 2407, 2850, 3124, 4796
AlwI GGATC 9 cut(s) 658, 1115, 1365, 1378, 1827, 1942, 2741, 3222, 3332
AlwNI CAGNNNCTG 1 cut(s) 1367
Ama87I CYCGRG 5 cut(s) 158, 349, 462, 654, 4475
Aor51HI AGCGCT 1 cut(s) 1942
ApaI GGGCCC 3 cut(s) 165, 357, 4102
ApeKI GCWGC 6 cut(s) 17, 2812, 3677, 4004, 4493, 5012
ApoI RAATTY 8 cut(s) 188, 664, 1402, 1849, 3657, 4179, 4712, 4747
ArsI GACNNNNNNTTYG 6 cut(s) 2279, 2311, 2883, 2915, 4391, 4423
Asp700I GAANNNNTTC 3 cut(s) 188, 2139, 3056
AspLEI GCGC 4 cut(s) 17, 22, 1672, 1943
AsuC2I CCSGG 3 cut(s) 159, 160, 4176
AsuII TTCGAA 2 cut(s) 2127, 4294
AsuNHI GCTAGC 1 cut(s) 4943
AvaI CYCGRG 5 cut(s) 158, 349, 462, 654, 4475
AvaII GGWCC 4 cut(s) 1885, 2735, 3148, 4772
BaeGI GKGCMC 5 cut(s) 165, 346, 357, 3539, 4102
BaeI ACNNNNGTAYC 2 cut(s) 1847, 1880
BalI TGGCCA 2 cut(s) 2758, 4162
BamHI GGATCC 1 cut(s) 1370
BanII GRGCYC 9 cut(s) 9, 69, 99, 165, 357, 1461, 1681, 2605, 4102
BauI CACGAG 1 cut(s) 2604
BbrPI CACGTG 2 cut(s) 341, 3323
Bbv12I GWGCWC 4 cut(s) 69, 99, 2605, 3328
BbvI GCAGC 6 cut(s) 29, 2824, 3664, 4016, 4480, 4999
BceAI ACGGC 3 cut(s) 28, 3151, 4242
BcgI CGANNNNNNTGC 6 cut(s) 635, 669, 1730, 1764, 2769, 2803
BciT130I CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2938, 3245, 4116
BclI TGATCA 2 cut(s) 3442, 4450
BcnI CCSGG 3 cut(s) 159, 160, 4176
BcoDI GTCTC 7 cut(s) 743, 1444, 2177, 2407, 2850, 3124, 4796
BfmI CTRYAG 9 cut(s) 1468, 3105, 3382, 3787, 3807, 3815, 4367, 5013, 5139
BfoI RGCGCY 2 cut(s) 23, 1944
BfrI CTTAAG 4 cut(s) 743, 785, 2980, 3991
BfuAI ACCTGC 1 cut(s) 322
BlpI GCTNAGC 1 cut(s) 4468
BmcAI AGTACT 2 cut(s) 2986, 3813
Bme18I GGWCC 4 cut(s) 1885, 2735, 3148, 4772
BmeRI GACNNNNNGTC 1 cut(s) 4809
BmeT110I CYCGRG 5 cut(s) 158, 349, 462, 654, 4475
BmgBI CACGTC 2 cut(s) 1281, 1863
BmiI GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1372, 3150, 4100
BmrI ACTGGG 1 cut(s) 1764
BmtI GCTAGC 1 cut(s) 4947
BmuI ACTGGG 1 cut(s) 1764
BoxI GACNNNNGTC 1 cut(s) 2586
BplI GAGNNNNNCTC 2 cut(s) 2587, 2619
BpmI CTGGAG 1 cut(s) 1619
Bpu10I CCTNAGC 1 cut(s) 837
Bpu1102I GCTNAGC 1 cut(s) 4468
Bpu14I TTCGAA 2 cut(s) 2127, 4294
BpuEI CTTGAG 7 cut(s) 749, 1475, 1706, 1771, 2542, 3308, 3350
BpuMI CCSGG 3 cut(s) 159, 160, 4176
BsaAI YACGTR 3 cut(s) 341, 1701, 3323
BsaBI GATNNNNATC 1 cut(s) 3954
BsaHI GRCGYC 2 cut(s) 331, 2941
BsaJI CCNNGG 9 cut(s) 39, 158, 196, 604, 1255, 2667, 2807, 2936, 4174
BsaWI WCCGGW 1 cut(s) 3211
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 3022, 3052
Bse118I RCCGGY 1 cut(s) 1882
Bse3DI GCAATG 4 cut(s) 292, 1029, 3707, 4516
Bse8I GATNNNNATC 1 cut(s) 3954
BseBI CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2938, 3245, 4116
BseDI CCNNGG 9 cut(s) 39, 158, 196, 604, 1255, 2667, 2807, 2936, 4174
BseGI GGATG 8 cut(s) 332, 832, 1357, 1923, 2075, 3344, 3415, 4850
BseJI GATNNNNATC 1 cut(s) 3954
BseMI GCAATG 4 cut(s) 292, 1029, 3707, 4516
BseSI GKGCMC 5 cut(s) 165, 346, 357, 3539, 4102
BseX3I CGGCCG 1 cut(s) 3136
BseXI GCAGC 6 cut(s) 29, 2824, 3664, 4016, 4480, 4999
BseYI CCCAGC 2 cut(s) 795, 1018
BsgI GTGCAG 3 cut(s) 830, 948, 2672
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 3139
BsiEI CGRYCG 1 cut(s) 3139
BsiHKAI GWGCWC 4 cut(s) 69, 99, 2605, 3328
BsiHKCI CYCGRG 5 cut(s) 158, 349, 462, 654, 4475
BsiSI CCGG 4 cut(s) 159, 1883, 3212, 4176
BslFI GGGAC 4 cut(s) 534, 3134, 4157, 4964
BsmAI GTCTC 7 cut(s) 743, 1444, 2177, 2407, 2850, 3124, 4796
BsmBI CGTCTC 1 cut(s) 2407
BsmFI GGGAC 4 cut(s) 534, 3134, 4157, 4964
BsmI GAATGC 6 cut(s) 475, 838, 1699, 2162, 3004, 3047
BsoBI CYCGRG 5 cut(s) 158, 349, 462, 654, 4475
Bsp119I TTCGAA 2 cut(s) 2127, 4294
Bsp120I GGGCCC 3 cut(s) 161, 353, 4098
Bsp1720I GCTNAGC 1 cut(s) 4468
Bsp19I CCATGG 2 cut(s) 196, 2667
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 3742
BspLI GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1372, 3150, 4100
BspMAI CTGCAG 3 cut(s) 3819, 4371, 5017
BspMI ACCTGC 1 cut(s) 322
BspOI GCTAGC 1 cut(s) 4947
BspPI GGATC 9 cut(s) 658, 1115, 1365, 1378, 1827, 1942, 2741, 3222, 3332
BspQI GCTCTTC 3 cut(s) 275, 1686, 3312
BspT104I TTCGAA 2 cut(s) 2127, 4294
BspTI CTTAAG 4 cut(s) 743, 785, 2980, 3991
BsrDI GCAATG 4 cut(s) 292, 1029, 3707, 4516
BsrFI RCCGGY 1 cut(s) 1882
BssAI RCCGGY 1 cut(s) 1882
BssECI CCNNGG 9 cut(s) 39, 158, 196, 604, 1255, 2667, 2807, 2936, 4174
BssNI GRCGYC 2 cut(s) 331, 2941
BssSI CACGAG 1 cut(s) 2604
BssT1I CCWWGG 3 cut(s) 196, 2667, 2807
Bst2BI CACGAG 1 cut(s) 2604
Bst2UI CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2938, 3245, 4116
Bst6I CTCTTC 6 cut(s) 106, 275, 1686, 2043, 3312, 3674
BstACI GRCGYC 2 cut(s) 331, 2941
BstAFI CTTAAG 4 cut(s) 743, 785, 2980, 3991
BstBAI YACGTR 3 cut(s) 341, 1701, 3323
BstBI TTCGAA 2 cut(s) 2127, 4294
BstC8I GCNNGC 9 cut(s) 95, 232, 528, 845, 1186, 3573, 4465, 4533, 4945
BstDSI CCRYGG 4 cut(s) 39, 196, 604, 2667
BstEII GGTNACC 3 cut(s) 1418, 2477, 3505
BstENI CCTNNNNNAGG 1 cut(s) 3248
BstF5I GGATG 8 cut(s) 332, 832, 1357, 1923, 2075, 3344, 3415, 4850
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 2 cut(s) 23, 1944
BstHHI GCGC 4 cut(s) 17, 22, 1672, 1943
BstMAI GTCTC 7 cut(s) 743, 1444, 2177, 2407, 2850, 3124, 4796
BstMCI CGRYCG 1 cut(s) 3139
BstNI CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2938, 3245, 4116
BstPAI GACNNNNGTC 1 cut(s) 2586
BstPI GGTNACC 3 cut(s) 1418, 2477, 3505
BstSFI CTRYAG 9 cut(s) 1468, 3105, 3382, 3787, 3807, 3815, 4367, 5013, 5139
BstSLI GKGCMC 5 cut(s) 165, 346, 357, 3539, 4102
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 6 cut(s) 29, 2824, 3664, 4016, 4480, 4999
BstX2I RGATCY 4 cut(s) 650, 1120, 1370, 1947
BstXI CCANNNNNNTGG 1 cut(s) 1214
BstYI RGATCY 4 cut(s) 650, 1120, 1370, 1947
BstZI CGGCCG 1 cut(s) 3136
BtgI CCRYGG 4 cut(s) 39, 196, 604, 2667
BtrI CACGTC 2 cut(s) 1281, 1863
BtsCI GGATG 8 cut(s) 332, 832, 1357, 1923, 2075, 3344, 3415, 4850
BtsI GCAGTG 2 cut(s) 2008, 2340
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 9 cut(s) 95, 232, 528, 845, 1186, 3573, 4465, 4533, 4945
CaiI CAGNNNCTG 1 cut(s) 1367
CciI TCATGA 1 cut(s) 3742
CfoI GCGC 4 cut(s) 17, 22, 1672, 1943
Cfr10I RCCGGY 1 cut(s) 1882
Cfr42I CCGCGG 1 cut(s) 42
Cfr9I CCCGGG 1 cut(s) 158
CseI GACGC 4 cut(s) 320, 1076, 2021, 2930
DriI GACNNNNNGTC 1 cut(s) 4809
EaeI YGGCCR 4 cut(s) 1354, 2756, 3136, 4160
EagI CGGCCG 1 cut(s) 3136
Eam1104I CTCTTC 6 cut(s) 106, 275, 1686, 2043, 3312, 3674
Eam1105I GACNNNNNGTC 1 cut(s) 4809
EarI CTCTTC 6 cut(s) 106, 275, 1686, 2043, 3312, 3674
EciI GGCGGA 2 cut(s) 59, 4977
Ecl136II GAGCTC 3 cut(s) 67, 97, 2603
EclXI CGGCCG 1 cut(s) 3136
Eco130I CCWWGG 3 cut(s) 196, 2667, 2807
Eco24I GRGCYC 9 cut(s) 9, 69, 99, 165, 357, 1461, 1681, 2605, 4102
Eco32I GATATC 1 cut(s) 4415
Eco47I GGWCC 4 cut(s) 1885, 2735, 3148, 4772
Eco47III AGCGCT 1 cut(s) 1942
Eco52I CGGCCG 1 cut(s) 3136
Eco53kI GAGCTC 3 cut(s) 67, 97, 2603
Eco57I CTGAAG 4 cut(s) 429, 779, 800, 4905
Eco72I CACGTG 2 cut(s) 341, 3323
Eco88I CYCGRG 5 cut(s) 158, 349, 462, 654, 4475
Eco91I GGTNACC 3 cut(s) 1418, 2477, 3505
EcoICRI GAGCTC 3 cut(s) 67, 97, 2603
EcoNI CCTNNNNNAGG 1 cut(s) 3248
EcoO109I RGGNCCY 4 cut(s) 353, 841, 3148, 4098
EcoO65I GGTNACC 3 cut(s) 1418, 2477, 3505
EcoRI GAATTC 2 cut(s) 4179, 4712
EcoRII CCWGG 7 cut(s) 322, 1254, 1366, 1996, 2936, 3243, 4114
EcoRV GATATC 1 cut(s) 4415
EcoT14I CCWWGG 3 cut(s) 196, 2667, 2807
EcoT22I ATGCAT 3 cut(s) 3626, 4190, 4537
EcoT38I GRGCYC 9 cut(s) 9, 69, 99, 165, 357, 1461, 1681, 2605, 4102
ErhI CCWWGG 3 cut(s) 196, 2667, 2807
Esp3I CGTCTC 1 cut(s) 2407
FalI AAGNNNNNCTT 2 cut(s) 1794, 1826
FaqI GGGAC 4 cut(s) 534, 3134, 4157, 4964
FauI CCCGC 2 cut(s) 202, 3548
FauNDI CATATG 1 cut(s) 3010
FbaI TGATCA 2 cut(s) 3442, 4450
FblI GTMKAC 3 cut(s) 2169, 2261, 2673
FokI GGATG 8 cut(s) 339, 839, 1344, 1910, 2062, 3331, 3422, 4837
FriOI GRGCYC 9 cut(s) 9, 69, 99, 165, 357, 1461, 1681, 2605, 4102
GlaI GCGC 4 cut(s) 16, 21, 1671, 1942
GsaI CCCAGC 2 cut(s) 799, 1022
GsuI CTGGAG 1 cut(s) 1619
HaeII RGCGCY 2 cut(s) 23, 1944
HapII CCGG 4 cut(s) 159, 1883, 3212, 4176
HgaI GACGC 4 cut(s) 320, 1076, 2021, 2930
HhaI GCGC 4 cut(s) 17, 22, 1672, 1943
Hin1I GRCGYC 2 cut(s) 331, 2941
Hin6I GCGC 4 cut(s) 15, 20, 1670, 1941
HinP1I GCGC 4 cut(s) 15, 20, 1670, 1941
HincII GTYRAC 3 cut(s) 1936, 2591, 3433
HindII GTYRAC 3 cut(s) 1936, 2591, 3433
HindIII AAGCTT 6 cut(s) 376, 435, 782, 1656, 2250, 3219
HpaI GTTAAC 1 cut(s) 1936
HpaII CCGG 4 cut(s) 159, 1883, 3212, 4176
Hpy99I CGWCG 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 331, 2941
HspAI GCGC 4 cut(s) 15, 20, 1670, 1941
Ksp22I TGATCA 2 cut(s) 3442, 4450
KspAI GTTAAC 1 cut(s) 1936
KspI CCGCGG 1 cut(s) 42
LguI GCTCTTC 3 cut(s) 275, 1686, 3312
LmnI GCTCC 8 cut(s) 4, 64, 72, 418, 857, 2600, 4117, 4528
Lsp1109I GCAGC 6 cut(s) 29, 2824, 3664, 4016, 4480, 4999
MaeIII GTNAC 9 cut(s) 814, 1243, 1418, 2477, 2942, 3318, 3494, 3505, 4610
MfeI CAATTG 1 cut(s) 1040
MflI RGATCY 4 cut(s) 650, 1120, 1370, 1947
MlsI TGGCCA 2 cut(s) 2758, 4162
MluNI TGGCCA 2 cut(s) 2758, 4162
MlyI GAGTC 3 cut(s) 44, 1106, 3660
MmeI TCCRAC 8 cut(s) 1115, 1412, 1797, 1944, 2869, 3140, 3365, 4878
Mox20I TGGCCA 2 cut(s) 2758, 4162
Mph1103I ATGCAT 3 cut(s) 3626, 4190, 4537
MroXI GAANNNNTTC 3 cut(s) 188, 2139, 3056
MscI TGGCCA 2 cut(s) 2758, 4162
Msp20I TGGCCA 2 cut(s) 2758, 4162
MspA1I CMGCKG 3 cut(s) 41, 939, 4699
MspCI CTTAAG 4 cut(s) 743, 785, 2980, 3991
MspI CCGG 4 cut(s) 159, 1883, 3212, 4176
MteI GCGCNGCGC 1 cut(s) 18
MunI CAATTG 1 cut(s) 1040
Mva1269I GAATGC 6 cut(s) 475, 838, 1699, 2162, 3004, 3047
MvaI CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2938, 3245, 4116
MvnI CGCG 1 cut(s) 41
NciI CCSGG 3 cut(s) 159, 160, 4176
NcoI CCATGG 2 cut(s) 196, 2667
NdeI CATATG 1 cut(s) 3010
NheI GCTAGC 1 cut(s) 4943
NlaIV GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1372, 3150, 4100
NmuCI GTSAC 5 cut(s) 1418, 2477, 2942, 3318, 3494
NsiI ATGCAT 3 cut(s) 3626, 4190, 4537
NspV TTCGAA 2 cut(s) 2127, 4294
OliI CACNNNNGTG 1 cut(s) 5159
PaeI GCATGC 2 cut(s) 3575, 4535
PaeR7I CTCGAG 3 cut(s) 462, 654, 4475
PagI TCATGA 1 cut(s) 3742
PciI ACATGT 2 cut(s) 1135, 3414
PciSI GCTCTTC 3 cut(s) 275, 1686, 3312
PcsI WCGNNNNNNNCGW 1 cut(s) 3141
PctI GAATGC 6 cut(s) 475, 838, 1699, 2162, 3004, 3047
PdmI GAANNNNTTC 3 cut(s) 188, 2139, 3056
PflMI CCANNNNNTGG 1 cut(s) 1367
PleI GAGTC 3 cut(s) 43, 1105, 3660
PmaCI CACGTG 2 cut(s) 341, 3323
PmlI CACGTG 2 cut(s) 341, 3323
PpsI GAGTC 3 cut(s) 43, 1105, 3660
Ppu21I YACGTR 3 cut(s) 341, 1701, 3323
PpuMI RGGWCCY 1 cut(s) 3148
PscI ACATGT 2 cut(s) 1135, 3414
PshAI GACNNNNGTC 1 cut(s) 2586
PsiI TTATAA 1 cut(s) 5067
Psp124BI GAGCTC 3 cut(s) 69, 99, 2605
Psp1406I AACGTT 3 cut(s) 1530, 2897, 4609
Psp5II RGGWCCY 1 cut(s) 3148
Psp6I CCWGG 7 cut(s) 322, 1254, 1366, 1996, 2936, 3243, 4114
PspCI CACGTG 2 cut(s) 341, 3323
PspEI GGTNACC 3 cut(s) 1418, 2477, 3505
PspFI CCCAGC 2 cut(s) 795, 1018
PspGI CCWGG 7 cut(s) 322, 1254, 1366, 1996, 2936, 3243, 4114
PspN4I GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1372, 3150, 4100
PspOMI GGGCCC 3 cut(s) 161, 353, 4098
PspPPI RGGWCCY 1 cut(s) 3148
PspXI VCTCGAGB 1 cut(s) 462
PsrI GAACNNNNNNTAC 2 cut(s) 4737, 4769
PstI CTGCAG 3 cut(s) 3819, 4371, 5017
PstNI CAGNNNCTG 1 cut(s) 1367
PsuI RGATCY 4 cut(s) 650, 1120, 1370, 1947
PvuII CAGCTG 1 cut(s) 4699
SacI GAGCTC 3 cut(s) 69, 99, 2605
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 3 cut(s) 275, 1686, 3312
ScaI AGTACT 2 cut(s) 2986, 3813
SchI GAGTC 3 cut(s) 44, 1106, 3660
SfcI CTRYAG 9 cut(s) 1468, 3105, 3382, 3787, 3807, 3815, 4367, 5013, 5139
Sfr274I CTCGAG 3 cut(s) 462, 654, 4475
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 2 cut(s) 2127, 4294
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 4 cut(s) 1885, 2735, 3148, 4772
SlaI CTCGAG 3 cut(s) 462, 654, 4475
SmaI CCCGGG 1 cut(s) 160
SphI GCATGC 2 cut(s) 3575, 4535
SspI AATATT 3 cut(s) 2617, 3688, 4508
SstI GAGCTC 3 cut(s) 69, 99, 2605
StyI CCWWGG 3 cut(s) 196, 2667, 2807
TaqII GACCGA 1 cut(s) 3513
TatI WGTACW 5 cut(s) 867, 872, 2018, 2984, 3811
TauI GCSGC 5 cut(s) 44, 1356, 1882, 3141, 3490
TseFI GTSAC 5 cut(s) 1418, 2477, 2942, 3318, 3494
TseI GCWGC 6 cut(s) 17, 2812, 3677, 4004, 4493, 5012
Tsp45I GTSAC 5 cut(s) 1418, 2477, 2942, 3318, 3494
TspGWI ACGGA 4 cut(s) 593, 1736, 3043, 3337
TspMI CCCGGG 1 cut(s) 158
Van91I CCANNNNNTGG 1 cut(s) 1367
Vha464I CTTAAG 4 cut(s) 743, 785, 2980, 3991
VpaK11BI GGWCC 4 cut(s) 1885, 2735, 3148, 4772
XagI CCTNNNNNAGG 1 cut(s) 3248
XapI RAATTY 8 cut(s) 188, 664, 1402, 1849, 3657, 4179, 4712, 4747
XbaI TCTAGA 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 3 cut(s) 1364, 1970, 4998
XhoI CTCGAG 3 cut(s) 462, 654, 4475
XmaI CCCGGG 1 cut(s) 158
XmiI GTMKAC 3 cut(s) 2169, 2261, 2673
XmnI GAANNNNTTC 3 cut(s) 188, 2139, 3056
ZrmI AGTACT 2 cut(s) 2986, 3813
Zsp2I ATGCAT 3 cut(s) 3626, 4190, 4537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.