RLG00000027361

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003732
Physical Location & Seq
Forward (+)
10911483 .. 10919902
8420 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027361

Sequence Viewer

Length: 5244 bp
ATGGAGCCCGACGGCGCAGCCCCGATGCAAGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCCGATGATAATGACGAAAATCCTGTTCTCTTGGTTGCACGTTCCACTGGTACTACAGGACCCATGCTGGTTCCACCAGTGAACAAATTCACTCTTGGGAATCAAGTGGGGAAGGCTGTATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCAACCGACTTCCCAGAAGAGCAATGATGTGAACAGAGTACCGTTAAAACCTGCTACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTAATGCCCAAAAAGTTGTCTATGAATCGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCATGAACAAAAATATAGTGAACAGAGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGCACTTAAGGAGACTGAATTGAAGCTCAAGGAAAGTGAACTGAAGCTTAAGTCTGCCCAGCGAACAAAGGAATCAGTTACATGCAAGGATGAGAATGCTAAGGGCCTGCACAGAGATGGAGCTGGTAAGTACAGTATAGGATATTCTGATGGTATGCAGACAGAACCAAAAGAGCCAGATAAAAAGCGTATAAAAGTCAGCGGTGCTTTTTCGACTCAGCTAACTGCACTAAACTCAAAAGAATTACCTGTTGCAAAACCTTTATTACCGTCAAAAACCCCATCAATGGAGGACAATACTCAATTGAACGCCAGTAAGATTGATCATCTCCAAAAAGAAAATCAAGTGCGTCCAACAGAGTCAAGCATTGTAAAATGGCAAGATCCTAATGATAAACATGTTGCTGGAATGTTGGGAAATATACATACTGGACTGAAAGATGGTGCTGGCATCAATGCTAAATATATCCAGTCCGATGGGAGGGGTAAGCAGATGGATTCTGTTGTTACACCAAACCAGGCTAAATCACTGGCAAATATGACGTGCGTTGATTTTCCAAATAACTTGAATAGTGTGGAGTTGAATCATACAAATACTAACACAAACACAAATAGCGGCCATCCAGAACCTGGATCCTTCTTAAACAATCCAACATCAGGAAAGAATTTAATGGGAAGTGGTGGCCATCAGGAAACCATATCCATTGACAAGGGACTTGAGCCCTCATTCTACAGTAAATGTCAGGCACTCCTAAACAACACAAACCTCTCGAACTGTTTTGGTAATGCAAACGTTACAGGAGATGACAACATGAAGATGCAGTCATTGGTTCAAATGGAGGAAATGCTAGACAAGAATCTGGAGGAAGCACAAGAGCATAGGCGAAGGTGTGAAATTGAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCACAGAGGGCTCTTCTTGAGGCGAATGCTAGGTGTGATGTTCTTTATCGGAAAAGGGAACTGTATTCTGCCGACTTCCGTGCTTACGTTATTAACAATCCCAGTTTGTTATGTTCGTCAAGGCAGAATGAACAAGCTGGACTAGGGTTGGATCACCCTAATAACTTGTCTGAAAATGTGAATTTGATACCCACATCAAGCCATCAGATGCCACTGGACCAGAATGACTGCAATCTAGCGGTTATTGATTCCAATATCCAATGCGTTAACAGCGCTCAGATCCTGAATCCCTACCAGCATTTGAGTGGAGAAAACATTGGCTCAGAACCATGCAGTGAACCTGACGCTAGTACATCTGAGCCAGTGCCTCTTCTGGGCAATACTGGCACAGATGGAGTTTGCTCTCCATCCAATGAACCAAATGGTTCAGCAAATGAAGATGATGATACATTTTCATTCGAAAATGAATCTGTTCAACCCAATGGTGAATGCCATCTTGTAGACAAACAAAAGGAGACAGATAATGAATCAAATAGGATAATGTCTATTGACCCCAACGAGGAATCTTTACTTCTTGAGAAAGCTTTGAGGTCTACACTATTTGCAAAGCTAGGAACAAAAAATGTGTCAAAGAACAATGTTGTATGTAATGGCACAGGGATTGCAGTGGAACAAGAGGCTGAAAGTGATGCGAGAAGTGAAGAACCACAAAAAGTAAACGGGAGTTCTCCCGTCTCAGTGGTGGAGAATAATCAACAATCTGATATTGAAGGCGTTGATGTGCATGAAAAAAGTTTCGCTGAGGCTCCTCTTGAGATCCAGAGAAAGCATTCCATCAAACATTTGTCTTTGAATTCTCATTCCAGTGTATATTTTGAGGACGGATGTTCCTTTGGAGGTGACCACTCATTGACTTCCATGATCTTTTCGCCTTCCTACATCTTGAGTAGTGCTTTTGGGTATATGAAGGTTATAGACCCAAACAATGTGATGGAACATCAGGACAGAAGTCAACAGAGTGGAACTCGTGATACTAATATTGAAGAAGGTGCTTGTATAAACTCCGGTAAAGTGCAGTTTAGGCTGTTTAGCAGTACCATGGTAGACACTACGAAAAAGGCTCTGGTGAAATTATGTGATAGAGAAGATGGCTCTTATAGCACTGGTCCTGCTGTTGATCCCTTTTGGCCACTTTGCATGTATGAGCTACGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGTTAAGGACTACTCTACCACCGATATGTCTCCACATCAGCATGATAATTCTGAAATTGCTGGTTGTCAGGTTGGACAAATGTTTTGCAAAGAAAAGTGTGATGGTTCAGCAAAAGTTCCCTGGCGTCACAATTTTATGACTTTACCAACTTACCTTGTTGGCTTAAGTACTCTAAAAGCTGATCTGCATTCATATGATTCTGTTCTAGCACGGAGAAATGGTGAATGCTGGAAGAAGTGTTTCAGCCTTTTCTTAGCATTGTCAAAGTCGTTTCAAAAAGATTTTCCTACAGATGGGCCAGTCTCGCTTGGAAATGACGGCCGCATCGAGGTCCCTAATCAACCGGATCAAGCTTTGGCTGACAATGAGCAATACCTGGAAAAGGCTCTTTTAATTTTCAGTCAGGAGGTCAATGCACTTGAGGGTATGAAAAAGGCTCTTCCTGTATTGTCACGTGCTCTTGAGGCTGATCCAACATCCGTAGTTCTCTGGGTCTTTTATCTGCTTATTTACTATAGCAATATGAAGTCAGTAGGGAAGGATGACATGTTCTCTTGTGCGGTCAACTACAATGATCAATCTTTTGAACTTTGGATTATGTTCATCAACAGTCGGGTGCGGCTAAGTGACCGATTGGTTACCTATGATCTTGCCCTCTCAGCACTGTGCCGCCATGCTTCTTCTGCCAAAGATAAAGTGCATGCTAGTGCTTGTATCTTAGACTTAGTTTTGCAAATGGTGGATTGTCTATGCATGTCTGGGAATGTTGAGAGGGCCATTCAGAAAATTTGTGGACTCTTCTCTGCTGCCACAAATATTTATGACCCCGATTCTCCATTGCTTACTGATATGCCCAAATGCCTAACAAGTCATGACAAATGTATTTTGGGGGTGTGTTGTGTTTACTTGGTTATCTATAGGAAACTTCCTGATGCTGTAGTACTGCAGTTTGAATGTCAGAAAGAACTGTTTGCAATAGAATGGCCTTCTATTGAATTAACAGATAATGAAAAGCAGAGGGCTGTCAAACTGATGGAAGCAGTAGAAGATTCTGTATGTCAATCGCTGGATAAAAGTGATTTTAATCTCAGTTTGGCACATTTTTTTGCTCTGAGCCACTTAAGGTGCATGGCAGCTATTGACAGCTTAGAAAGGTGTAGTAATCTTCTGGGTAAATATCTTAAAATGTTCCCGTCCTGCTTAGAGCTTGTTCTAATATCGGCAAGGGCCCAAAAACATGCTCCTGGTGATTCGCTTTTTGAGGGGTTTGAGGAAGCCCTAGATAATTGGCCAAAAGAAGTCCCGGGAATTCAATGCATCTGGAATCAGTATGTTGTATATGCCTTTCAGAAAGGACAATTTGATTTTGGTAAAGAACTTATAGGCCGTTGGTTTCATTCTTTTTGGCAAGTTCATTGTATTCGAAATGGTACATTAGATGACATGGAGTGTGATAACTCGGATGGCTCACTAGGATTGGCTTCGGATTCAGTTCTGCAGACACTTAATACTGATTCTAAGCAGATGGACGTATTGTTTGGATATCTTAATCTCTCGCTGTATAAGTTAATCCAAAATGATCAGATTGAAGCTCGCTTAGCCCTTGAGAGGGCATTGAAGGCTGCTGTTCCAGAATATTCAAAGCATTGCATGAGGGAGCATGCATTATTTATGCTAAGTGAGGAATCAGGATTTAAGGAGAATGGTTGTCCTAGTGGCATGGAGAAGATTTTGAAACGTTACATGGGTGATGCCGAAGTTTTCCCTCCATCTGAGCCATTATCTAGGCAGTTTATTGCCGACATCAAGAAGCCAAGAGTACGACAGCTGGTTAGTAACGCATTCAGTCCATTCTCGTCTGATTTTGCTCTTGTAAATTCAGTTCTTGAAGTGTTGTATGGACCATCTCTTTTACCGAAAAAGACTGGTGAGACAAAATATATGGTGGATTTTGTTGAAGCGATCTTGGATATAACTCCATCCAACTATCAGTTAGCTATTTCTGTCTGTAAGCTGTTAATTACTGGCAACAATGCGACTGATATTACTTCAGTCAGTCTTTTGTTCTGGGCTAGCTCAAACATGGTCAGTGCAATCTTTCGTGCTGTCCCAATTCCGCCAGAGTATGTATGGGTAGAAGCTGCAGACATATTGGGCAATATGGTGAATGTTGAGGTTATTTCTGAGACGTTTTATAAGAGAGCTTTATCTGTATATCCTTTCTCTGTCAAGTTGTGGAAATCCTATTACATGCTTTCTATGATGACTACAGGAAATATGAACACTGTTGTGGAAACAGCAAAGGAAAAAGGTATAGAACTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1748

Amino Acids

193.52

Weight (kDa)

5.39

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 954 - 974 1.5e-09 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 5112
Acc36I ACCTGC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 1367
AccI GTMKAC 3 cut(s) 2169, 2261, 2772
AccII CGCG 1 cut(s) 41
AclI AACGTT 2 cut(s) 1530, 4654
AcoI YGGCCR 5 cut(s) 1354, 1420, 2855, 3235, 4205
AcsI RAATTY 8 cut(s) 188, 664, 1402, 1849, 2521, 3702, 4224, 4792
AcuI CTGAAG 3 cut(s) 429, 800, 4950
AcvI CACGTG 2 cut(s) 341, 3371
AcyI GRCGYC 2 cut(s) 331, 3040
AfaI GTAC 9 cut(s) 154, 303, 869, 2020, 2764, 3085, 3858, 4348, 4737
AfeI AGCGCT 1 cut(s) 1942
AflII CTTAAG 4 cut(s) 743, 785, 3079, 4036
AflIII ACRYGT 2 cut(s) 1135, 3462
AjiI CACGTC 1 cut(s) 1281
AjnI CCWGG 6 cut(s) 322, 1254, 1366, 3035, 3291, 4159
AleI CACNNNNGTG 1 cut(s) 5204
AloI GAACNNNNNNTCC 2 cut(s) 3449, 3481
Alw21I GWGCWC 3 cut(s) 69, 99, 3376
Alw26I GTCTC 7 cut(s) 743, 2177, 2407, 2949, 3223, 4841, 5096
AlwNI CAGNNNCTG 2 cut(s) 1367, 1951
Ama87I CYCGRG 4 cut(s) 349, 462, 654, 4219
Aor51HI AGCGCT 1 cut(s) 1942
ApaI GGGCCC 2 cut(s) 357, 4147
ApeKI GCWGC 6 cut(s) 17, 2911, 3722, 4049, 4538, 5057
ApoI RAATTY 8 cut(s) 188, 664, 1402, 1849, 2521, 3702, 4224, 4792
ArsI GACNNNNNNTTYG 6 cut(s) 2279, 2311, 2982, 3014, 4436, 4468
Asp700I GAANNNNTTC 4 cut(s) 188, 2139, 2497, 3155
AspLEI GCGC 2 cut(s) 17, 1943
AsuC2I CCSGG 2 cut(s) 4220, 4221
AsuHPI GGTGA 9 cut(s) 1814, 2165, 2579, 2806, 3149, 4175, 4676, 4856, 5092
AsuII TTCGAA 2 cut(s) 2127, 4339
AsuNHI GCTAGC 1 cut(s) 4988
AvaI CYCGRG 4 cut(s) 349, 462, 654, 4219
AvaII GGWCC 5 cut(s) 161, 1885, 2834, 3247, 4817
BaeGI GKGCMC 3 cut(s) 346, 357, 4147
BalI TGGCCA 3 cut(s) 1422, 2857, 4207
BamHI GGATCC 1 cut(s) 1370
BanII GRGCYC 7 cut(s) 9, 69, 99, 357, 1461, 1681, 4147
BauI CACGAG 1 cut(s) 2694
BbrPI CACGTG 2 cut(s) 341, 3371
Bbv12I GWGCWC 3 cut(s) 69, 99, 3376
BbvCI CCTCAGC 1 cut(s) 2469
BbvI GCAGC 6 cut(s) 29, 2923, 3709, 4061, 4525, 5044
BceAI ACGGC 3 cut(s) 28, 3250, 4287
BcgI CGANNNNNNTGC 6 cut(s) 635, 669, 1730, 1764, 2868, 2902
BciT130I CCWGG 6 cut(s) 324, 1256, 1368, 3037, 3293, 4161
BclI TGATCA 3 cut(s) 1060, 3490, 4495
BcnI CCSGG 2 cut(s) 4220, 4221
BcoDI GTCTC 7 cut(s) 743, 2177, 2407, 2949, 3223, 4841, 5096
BfoI RGCGCY 1 cut(s) 1944
BfrI CTTAAG 4 cut(s) 743, 785, 3079, 4036
BfuAI ACCTGC 1 cut(s) 322
BlpI GCTNAGC 1 cut(s) 4513
BmcAI AGTACT 2 cut(s) 3085, 3858
Bme1390I CCNGG 8 cut(s) 324, 1256, 1368, 3037, 3293, 4161, 4220, 4221
Bme18I GGWCC 5 cut(s) 161, 1885, 2834, 3247, 4817
BmeT110I CYCGRG 4 cut(s) 349, 462, 654, 4219
BmgBI CACGTC 1 cut(s) 1281
BmiI GGNNCC 9 cut(s) 6, 163, 174, 354, 355, 1372, 2475, 3249, 4145
BmrFI CCNGG 8 cut(s) 324, 1256, 1368, 3037, 3293, 4161, 4220, 4221
BmrI ACTGGG 1 cut(s) 1764
BmsI GCATC 9 cut(s) 15, 1197, 1545, 1866, 2347, 3249, 3838, 4242, 4657
BmtI GCTAGC 1 cut(s) 4992
BmuI ACTGGG 1 cut(s) 1764
BoxI GACNNNNGTC 1 cut(s) 2676
BplI GAGNNNNNCTC 2 cut(s) 2677, 2709
BpmI CTGGAG 1 cut(s) 1619
Bpu10I CCTNAGC 2 cut(s) 837, 2469
Bpu1102I GCTNAGC 1 cut(s) 4513
Bpu14I TTCGAA 2 cut(s) 2127, 4339
BpuEI CTTGAG 9 cut(s) 749, 1475, 1706, 2264, 2501, 2632, 3356, 3398, 4541
BpuMI CCSGG 2 cut(s) 4220, 4221
BsaAI YACGTR 2 cut(s) 341, 3371
BsaBI GATNNNNATC 1 cut(s) 3999
BsaHI GRCGYC 2 cut(s) 331, 3040
BsaJI CCNNGG 6 cut(s) 39, 604, 2766, 2906, 3035, 4219
BsaWI WCCGGW 2 cut(s) 2732, 3259
BsaXI ACNNNNNCTCC 2 cut(s) 3121, 3151
Bse3DI GCAATG 3 cut(s) 292, 3752, 4561
Bse8I GATNNNNATC 1 cut(s) 3999
BseBI CCWGG 6 cut(s) 324, 1256, 1368, 3037, 3293, 4161
BseDI CCNNGG 6 cut(s) 39, 604, 2766, 2906, 3035, 4219
BseGI GGATG 9 cut(s) 332, 832, 1357, 2075, 2558, 3392, 3463, 4384, 4895
BseJI GATNNNNATC 1 cut(s) 3999
BseMI GCAATG 3 cut(s) 292, 3752, 4561
BseRI GAGGAG 1 cut(s) 2466
BseSI GKGCMC 3 cut(s) 346, 357, 4147
BseX3I CGGCCG 1 cut(s) 3235
BseXI GCAGC 6 cut(s) 29, 2923, 3709, 4061, 4525, 5044
BseYI CCCAGC 1 cut(s) 795
BsgI GTGCAG 3 cut(s) 830, 948, 2762
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 3238
BsiEI CGRYCG 1 cut(s) 3238
BsiHKAI GWGCWC 3 cut(s) 69, 99, 3376
BsiHKCI CYCGRG 4 cut(s) 349, 462, 654, 4219
BsiSI CCGG 3 cut(s) 2733, 3260, 4220
BslFI GGGAC 5 cut(s) 534, 1464, 3233, 4202, 5009
BsmAI GTCTC 7 cut(s) 743, 2177, 2407, 2949, 3223, 4841, 5096
BsmBI CGTCTC 2 cut(s) 2407, 5096
BsmFI GGGAC 5 cut(s) 534, 1464, 3233, 4202, 5009
BsmI GAATGC 8 cut(s) 475, 838, 1699, 2162, 2497, 3103, 3146, 4757
BsoBI CYCGRG 4 cut(s) 349, 462, 654, 4219
Bsp119I TTCGAA 2 cut(s) 2127, 4339
Bsp120I GGGCCC 2 cut(s) 353, 4143
Bsp1286I GDGCHC 9 cut(s) 9, 69, 99, 346, 357, 1461, 1681, 3376, 4147
Bsp1720I GCTNAGC 1 cut(s) 4513
Bsp19I CCATGG 1 cut(s) 2766
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 3787
BspLI GGNNCC 9 cut(s) 6, 163, 174, 354, 355, 1372, 2475, 3249, 4145
BspMAI CTGCAG 3 cut(s) 3864, 4416, 5062
BspMI ACCTGC 1 cut(s) 322
BspOI GCTAGC 1 cut(s) 4992
BspQI GCTCTTC 3 cut(s) 275, 1686, 3360
BspT104I TTCGAA 2 cut(s) 2127, 4339
BspTI CTTAAG 4 cut(s) 743, 785, 3079, 4036
BsrDI GCAATG 3 cut(s) 292, 3752, 4561
BssECI CCNNGG 6 cut(s) 39, 604, 2766, 2906, 3035, 4219
BssNI GRCGYC 2 cut(s) 331, 3040
BssSI CACGAG 1 cut(s) 2694
BssT1I CCWWGG 2 cut(s) 2766, 2906
Bst2BI CACGAG 1 cut(s) 2694
Bst2UI CCWGG 6 cut(s) 324, 1256, 1368, 3037, 3293, 4161
Bst6I CTCTTC 6 cut(s) 106, 275, 1686, 2043, 3360, 3719
BstACI GRCGYC 2 cut(s) 331, 3040
BstAFI CTTAAG 4 cut(s) 743, 785, 3079, 4036
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 2 cut(s) 341, 3371
BstBI TTCGAA 2 cut(s) 2127, 4339
BstC8I GCNNGC 9 cut(s) 95, 232, 528, 845, 1186, 3618, 4510, 4578, 4990
BstDSI CCRYGG 3 cut(s) 39, 604, 2766
BstEII GGTNACC 2 cut(s) 2567, 3553
BstENI CCTNNNNNAGG 1 cut(s) 3296
BstF5I GGATG 9 cut(s) 332, 832, 1357, 2075, 2558, 3392, 3463, 4384, 4895
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 1944
BstHHI GCGC 2 cut(s) 17, 1943
BstMAI GTCTC 7 cut(s) 743, 2177, 2407, 2949, 3223, 4841, 5096
BstMCI CGRYCG 1 cut(s) 3238
BstNI CCWGG 6 cut(s) 324, 1256, 1368, 3037, 3293, 4161
BstPAI GACNNNNGTC 1 cut(s) 2676
BstPI GGTNACC 2 cut(s) 2567, 3553
BstSCI CCNGG 8 cut(s) 322, 1254, 1366, 3035, 3291, 4159, 4218, 4219
BstSLI GKGCMC 3 cut(s) 346, 357, 4147
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 6 cut(s) 29, 2923, 3709, 4061, 4525, 5044
BstX2I RGATCY 5 cut(s) 650, 1120, 1370, 1947, 2484
BstXI CCANNNNNNTGG 1 cut(s) 1214
BstYI RGATCY 5 cut(s) 650, 1120, 1370, 1947, 2484
BstZI CGGCCG 1 cut(s) 3235
BtgI CCRYGG 3 cut(s) 39, 604, 2766
BtrI CACGTC 1 cut(s) 1281
BtsCI GGATG 9 cut(s) 332, 832, 1357, 2075, 2558, 3392, 3463, 4384, 4895
BtsI GCAGTG 2 cut(s) 2008, 2340
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 9 cut(s) 95, 232, 528, 845, 1186, 3618, 4510, 4578, 4990
CaiI CAGNNNCTG 2 cut(s) 1367, 1951
CciI TCATGA 1 cut(s) 3787
CfoI GCGC 2 cut(s) 17, 1943
Cfr42I CCGCGG 1 cut(s) 42
Cfr9I CCCGGG 1 cut(s) 4219
CseI GACGC 4 cut(s) 320, 1076, 2021, 3029
Csp6I GTAC 9 cut(s) 153, 302, 868, 2019, 2763, 3084, 3857, 4347, 4736
CviQI GTAC 9 cut(s) 153, 302, 868, 2019, 2763, 3084, 3857, 4347, 4736
EaeI YGGCCR 5 cut(s) 1354, 1420, 2855, 3235, 4205
EagI CGGCCG 1 cut(s) 3235
Eam1104I CTCTTC 6 cut(s) 106, 275, 1686, 2043, 3360, 3719
EarI CTCTTC 6 cut(s) 106, 275, 1686, 2043, 3360, 3719
EciI GGCGGA 2 cut(s) 59, 5022
Ecl136II GAGCTC 2 cut(s) 67, 97
EclXI CGGCCG 1 cut(s) 3235
Eco130I CCWWGG 2 cut(s) 2766, 2906
Eco24I GRGCYC 7 cut(s) 9, 69, 99, 357, 1461, 1681, 4147
Eco32I GATATC 1 cut(s) 4460
Eco47I GGWCC 5 cut(s) 161, 1885, 2834, 3247, 4817
Eco47III AGCGCT 1 cut(s) 1942
Eco52I CGGCCG 1 cut(s) 3235
Eco53kI GAGCTC 2 cut(s) 67, 97
Eco57I CTGAAG 3 cut(s) 429, 800, 4950
Eco72I CACGTG 2 cut(s) 341, 3371
Eco88I CYCGRG 4 cut(s) 349, 462, 654, 4219
Eco91I GGTNACC 2 cut(s) 2567, 3553
EcoICRI GAGCTC 2 cut(s) 67, 97
EcoNI CCTNNNNNAGG 1 cut(s) 3296
EcoO109I RGGNCCY 5 cut(s) 161, 353, 841, 3247, 4143
EcoO65I GGTNACC 2 cut(s) 2567, 3553
EcoRI GAATTC 2 cut(s) 2521, 4224
EcoRII CCWGG 6 cut(s) 322, 1254, 1366, 3035, 3291, 4159
EcoRV GATATC 1 cut(s) 4460
EcoT14I CCWWGG 2 cut(s) 2766, 2906
EcoT22I ATGCAT 3 cut(s) 3671, 4235, 4582
EcoT38I GRGCYC 7 cut(s) 9, 69, 99, 357, 1461, 1681, 4147
ErhI CCWWGG 2 cut(s) 2766, 2906
Esp3I CGTCTC 2 cut(s) 2407, 5096
FaqI GGGAC 5 cut(s) 534, 1464, 3233, 4202, 5009
FauNDI CATATG 1 cut(s) 3109
FbaI TGATCA 3 cut(s) 1060, 3490, 4495
FblI GTMKAC 3 cut(s) 2169, 2261, 2772
FokI GGATG 9 cut(s) 339, 839, 1344, 2062, 2565, 3379, 3470, 4391, 4882
FriOI GRGCYC 7 cut(s) 9, 69, 99, 357, 1461, 1681, 4147
GlaI GCGC 2 cut(s) 16, 1942
GsaI CCCAGC 1 cut(s) 799
GsuI CTGGAG 1 cut(s) 1619
HaeII RGCGCY 1 cut(s) 1944
HapII CCGG 3 cut(s) 2733, 3260, 4220
HgaI GACGC 4 cut(s) 320, 1076, 2021, 3029
HhaI GCGC 2 cut(s) 17, 1943
Hin1I GRCGYC 2 cut(s) 331, 3040
Hin6I GCGC 2 cut(s) 15, 1941
HinP1I GCGC 2 cut(s) 15, 1941
HincII GTYRAC 3 cut(s) 1936, 2681, 3481
HindII GTYRAC 3 cut(s) 1936, 2681, 3481
HindIII AAGCTT 6 cut(s) 376, 435, 782, 1656, 2250, 3267
HpaI GTTAAC 1 cut(s) 1936
HpaII CCGG 3 cut(s) 2733, 3260, 4220
HphI GGTGA 9 cut(s) 1814, 2165, 2579, 2806, 3149, 4175, 4676, 4856, 5092
Hpy99I CGWCG 1 cut(s) 14
HpyCH4IV ACGT 9 cut(s) 142, 340, 1280, 1530, 1755, 3370, 4446, 4654, 5105
HpySE526I ACGT 9 cut(s) 142, 340, 1280, 1530, 1755, 3370, 4446, 4654, 5105
Hsp92I GRCGYC 2 cut(s) 331, 3040
HspAI GCGC 2 cut(s) 15, 1941
Ksp22I TGATCA 3 cut(s) 1060, 3490, 4495
KspAI GTTAAC 1 cut(s) 1936
KspI CCGCGG 1 cut(s) 42
LguI GCTCTTC 3 cut(s) 275, 1686, 3360
LmnI GCTCC 7 cut(s) 4, 64, 72, 857, 2479, 4162, 4573
Lsp1109I GCAGC 6 cut(s) 29, 2923, 3709, 4061, 4525, 5044
LweI GCATC 9 cut(s) 15, 1197, 1545, 1866, 2347, 3249, 3838, 4242, 4657
MaeII ACGT 9 cut(s) 142, 340, 1280, 1530, 1755, 3370, 4446, 4654, 5105
MfeI CAATTG 1 cut(s) 1040
MflI RGATCY 5 cut(s) 650, 1120, 1370, 1947, 2484
MhlI GDGCHC 9 cut(s) 9, 69, 99, 346, 357, 1461, 1681, 3376, 4147
MlsI TGGCCA 3 cut(s) 1422, 2857, 4207
MluNI TGGCCA 3 cut(s) 1422, 2857, 4207
MlyI GAGTC 4 cut(s) 44, 946, 1106, 3705
MmeI TCCRAC 6 cut(s) 1115, 1412, 1797, 2968, 3413, 4923
Mox20I TGGCCA 3 cut(s) 1422, 2857, 4207
Mph1103I ATGCAT 3 cut(s) 3671, 4235, 4582
MroXI GAANNNNTTC 4 cut(s) 188, 2139, 2497, 3155
MscI TGGCCA 3 cut(s) 1422, 2857, 4207
Msp20I TGGCCA 3 cut(s) 1422, 2857, 4207
MspA1I CMGCKG 3 cut(s) 41, 939, 4744
MspCI CTTAAG 4 cut(s) 743, 785, 3079, 4036
MspI CCGG 3 cut(s) 2733, 3260, 4220
MspR9I CCNGG 8 cut(s) 324, 1256, 1368, 3037, 3293, 4161, 4220, 4221
MunI CAATTG 1 cut(s) 1040
Mva1269I GAATGC 8 cut(s) 475, 838, 1699, 2162, 2497, 3103, 3146, 4757
MvaI CCWGG 6 cut(s) 324, 1256, 1368, 3037, 3293, 4161
MvnI CGCG 1 cut(s) 41
NciI CCSGG 2 cut(s) 4220, 4221
NcoI CCATGG 1 cut(s) 2766
NdeI CATATG 1 cut(s) 3109
NheI GCTAGC 1 cut(s) 4988
NlaIV GGNNCC 9 cut(s) 6, 163, 174, 354, 355, 1372, 2475, 3249, 4145
NmuCI GTSAC 4 cut(s) 2567, 3041, 3366, 3542
NsiI ATGCAT 3 cut(s) 3671, 4235, 4582
NspV TTCGAA 2 cut(s) 2127, 4339
OliI CACNNNNGTG 1 cut(s) 5204
PaeI GCATGC 2 cut(s) 3620, 4580
PaeR7I CTCGAG 2 cut(s) 462, 654
PagI TCATGA 1 cut(s) 3787
PciI ACATGT 2 cut(s) 1135, 3462
PciSI GCTCTTC 3 cut(s) 275, 1686, 3360
PcsI WCGNNNNNNNCGW 1 cut(s) 3240
PctI GAATGC 8 cut(s) 475, 838, 1699, 2162, 2497, 3103, 3146, 4757
PdmI GAANNNNTTC 4 cut(s) 188, 2139, 2497, 3155
PflMI CCANNNNNTGG 1 cut(s) 1367
PleI GAGTC 4 cut(s) 43, 946, 1105, 3705
PmaCI CACGTG 2 cut(s) 341, 3371
PmlI CACGTG 2 cut(s) 341, 3371
PpsI GAGTC 4 cut(s) 43, 946, 1105, 3705
Ppu21I YACGTR 2 cut(s) 341, 3371
PpuMI RGGWCCY 2 cut(s) 161, 3247
PscI ACATGT 2 cut(s) 1135, 3462
PshAI GACNNNNGTC 1 cut(s) 2676
PsiI TTATAA 1 cut(s) 5112
Psp124BI GAGCTC 2 cut(s) 69, 99
Psp1406I AACGTT 2 cut(s) 1530, 4654
Psp5II RGGWCCY 2 cut(s) 161, 3247
Psp6I CCWGG 6 cut(s) 322, 1254, 1366, 3035, 3291, 4159
PspCI CACGTG 2 cut(s) 341, 3371
PspEI GGTNACC 2 cut(s) 2567, 3553
PspFI CCCAGC 1 cut(s) 795
PspGI CCWGG 6 cut(s) 322, 1254, 1366, 3035, 3291, 4159
PspN4I GGNNCC 9 cut(s) 6, 163, 174, 354, 355, 1372, 2475, 3249, 4145
PspOMI GGGCCC 2 cut(s) 353, 4143
PspPPI RGGWCCY 2 cut(s) 161, 3247
PspXI VCTCGAGB 1 cut(s) 462
PsrI GAACNNNNNNTAC 4 cut(s) 2683, 2715, 4782, 4814
PstI CTGCAG 3 cut(s) 3864, 4416, 5062
PstNI CAGNNNCTG 2 cut(s) 1367, 1951
PsuI RGATCY 5 cut(s) 650, 1120, 1370, 1947, 2484
PvuII CAGCTG 1 cut(s) 4744
RsaI GTAC 9 cut(s) 154, 303, 869, 2020, 2764, 3085, 3858, 4348, 4737
RsaNI GTAC 9 cut(s) 153, 302, 868, 2019, 2763, 3084, 3857, 4347, 4736
SacI GAGCTC 2 cut(s) 69, 99
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 3 cut(s) 275, 1686, 3360
ScaI AGTACT 2 cut(s) 3085, 3858
SchI GAGTC 4 cut(s) 44, 946, 1106, 3705
ScrFI CCNGG 8 cut(s) 324, 1256, 1368, 3037, 3293, 4161, 4220, 4221
SduI GDGCHC 9 cut(s) 9, 69, 99, 346, 357, 1461, 1681, 3376, 4147
SfaNI GCATC 9 cut(s) 15, 1197, 1545, 1866, 2347, 3249, 3838, 4242, 4657
Sfr274I CTCGAG 2 cut(s) 462, 654
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 2 cut(s) 2127, 4339
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 5 cut(s) 161, 1885, 2834, 3247, 4817
SlaI CTCGAG 2 cut(s) 462, 654
SmaI CCCGGG 1 cut(s) 4221
SphI GCATGC 2 cut(s) 3620, 4580
SspI AATATT 3 cut(s) 2707, 3733, 4553
SstI GAGCTC 2 cut(s) 69, 99
StyD4I CCNGG 8 cut(s) 322, 1254, 1366, 3035, 3291, 4159, 4218, 4219
StyI CCWWGG 2 cut(s) 2766, 2906
TaiI ACGT 9 cut(s) 145, 343, 1283, 1533, 1758, 3373, 4449, 4657, 5108
TaqI TCGA 8 cut(s) 33, 463, 655, 950, 1508, 2127, 3243, 4339
TaqII GACCGA 1 cut(s) 3561
TatI WGTACW 4 cut(s) 867, 2018, 3083, 3856
TauI GCSGC 5 cut(s) 44, 1356, 3240, 3538, 3588
TseFI GTSAC 4 cut(s) 2567, 3041, 3366, 3542
TseI GCWGC 6 cut(s) 17, 2911, 3722, 4049, 4538, 5057
Tsp45I GTSAC 4 cut(s) 2567, 3041, 3366, 3542
TspGWI ACGGA 5 cut(s) 593, 1736, 2565, 3142, 3385
TspMI CCCGGG 1 cut(s) 4219
Van91I CCANNNNNTGG 1 cut(s) 1367
Vha464I CTTAAG 4 cut(s) 743, 785, 3079, 4036
VpaK11BI GGWCC 5 cut(s) 161, 1885, 2834, 3247, 4817
XagI CCTNNNNNAGG 1 cut(s) 3296
XapI RAATTY 8 cut(s) 188, 664, 1402, 1849, 2521, 3702, 4224, 4792
XbaI TCTAGA 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 3 cut(s) 1364, 1970, 5043
XhoI CTCGAG 2 cut(s) 462, 654
XmaI CCCGGG 1 cut(s) 4219
XmiI GTMKAC 3 cut(s) 2169, 2261, 2772
XmnI GAANNNNTTC 4 cut(s) 188, 2139, 2497, 3155
ZrmI AGTACT 2 cut(s) 3085, 3858
Zsp2I ATGCAT 3 cut(s) 3671, 4235, 4582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.