FvH4_7g21930

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003732
Physical Location & Seq
Reverse (-)
17419654 .. 17428377
8724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21930.t7

Sequence Viewer

Length: 5202 bp
ATGGAGCCCGACGGCGCCGCGCCGATGCAGGTCGACTCCGCGGCGGACAAAGGCCCTAACTCGGCGGAGCTCCAACTCAATCCCCCCAAATCCAGAGAAGAAGGCGAGCTCTCCTCCGATGACAATGACGAAAATCGTGTTTTATCAGCTGCACGATCGAATGGTACTAGTGTACTTACTCCAGGGCCCATGCCGGTTCCATCAGTGAACAAAGTCACCCTTGTGAATCAAGCGGGGAAGGCTGTATCTCCCACAAGCTCTGCTGATAATCAGAGCCAAAATTCCAAGCATCCTGTTTCCCAGAAGAGCAATGATGCGAACAGAGTACCATTAAAACCTGCTAAACCTGGATGGCGTCCCCCACATGCCCACTCGGGGCCAAACAATCTTGTGATAAGCTTCTCAGATGATGATAGCCAGAGTGATTCTGAAGAAAAAGAGCGTGGGAAACTGAAAGTCTTACAAACTAAAAGTAATATTACTCGAGCGAATGCTAATGGAAAACCACCCTTTTCTTCTATTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGGAATGTGAACAAAGTAATGCCGAAAAAGTTGTCTATGAATCGCACGTTTATCACATCAATGGCGAATATCGGTGGAGTTAATTCTAGAGATTCAGTGCCATCATCAGTTGAGCAAAGATCTCGAGTTGGAAATTTCTATTCCATGAACAAAAATATAGTGAACAGAGAGCGTGGAAATGAACTTCAAGACTTGCGACAGCAGATTGCACTGAAGGAAACTGAACTGAAGCTCAAGGAAAGTGAATTGAAGCTTAAGTCTGCCCAGCGAACTAAAGAATCAGTTACATGCAAGGATGAGAATGCTAAGGGCCTGCAAAGAGATGGAGCTGGACAGTGCAGTATAGGAGATTCTGATGTTCTGCAGATAGAACCACAAGAGCCAGATAAAAAGCGTCTAAAAGTCAGCGGCACTTTTTCCACTCAGCTAACTGCACTAGGCCCACAGGAATTACCTGTTGCAAAACCTTTATTACCATCAAAAACCACAGCTGTGGAGGACCATACTCAATTGGACTCCAGTAAGATTGATTTTGTCCAAAAAGAAAATCAGGTGCGCCCAACAGAGTCTAGCATTGTAAAATGGCAAAATCCTAATGATAAACATGTCTCTGGAATGTTGGGAAATATACATACTGGACTGAAAGATGGTGCTGGCATCAATGCTAAATACATCCAGTCCGATGGGAGGGGTAAGCAGATAGATTCTTCTGTTGTACCAATCCAGGCTAAATCACTGACAGATGTGGGTCCAAATAACTTGAATGGTGTGGAGTTGAATCATAGAGAACCTGGATCCTTAAACAATCCAATATCAGGAATGAATTTAATGAGAAGCGGTCACCATCCGGAAACCATAACTGCTGACAAGAGACCTGAGCTCTCATTCTACAGTACATGCCAGGCACTGCTAAACAACAAAAACCTCTCAGATTGTGTTGGTAATGCAAACGTTACGGGAGATGACAACATGAAGATGCAGTCATTGGTTCAAATGGAGGAAATGCTAGACAGGAATCTGGAGGAAGCACAAGAGCATAGGCGAAGGTGTGAAATTGAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCACAGAGGGCTCTTCTTGAAGCGAATGCTAGGTGTGATGTTCTTTATCGGAAAAGGGAGCAATATTCTGCCGACTTTCGTGCTTATGTTATCGATAATCCCAATTTGTTATGTTCCTCAAGGCAGCACGAACAAGGTGGATTTGAGTTGGATCACACTAATAACTTGTCTGAAAATGTGAATTTAACGCCCACGTCAAGCCATCAGATGCCGCTGGAGCATAATGATTGCAATCTAGCGGTTATTGATTCCAGAAACCAAGGTGTTTACACTGCTCAGATCCCCCATTCGGATCAGCATTTGAGTGGAGAAAACATTGGCTCAGAACCATGCAGTGAACCTGATGCTAGTACATCTGAGCCAGTGCCTCTTTTGGGAAATAATGGGACAGATGGAGTTTTCTCTCCATCTGAACCAAATGGTTCACAGAATGAAGATGATGATACATTTTCATTTGAAACTGAATCTGTTCGACGCGTTAGTGGATGCCATATTGTAGACAAACAAAAGGAGACAGATACTGAAGCAAATAAGAAAATGTCTATTGACCCGAACGAGGAATCTTTACTTCTCGAGAAAGCTTTGAGGTCTACACTATTTGCAAAGCTAGGAACAAAAAATGTTTCAAAGAACAGTTTCGAATGTAATGTCGGGATTGCAGTGGAACGAGAGGCTGAAAATGATGCGATTAGTGAAGGACCACCTCAAGTAAATGGGAGTTCTCCCTTCTCAGAGATGGAGAAGAATCAACAATCCAACATTGAAGGCGCTGATGGGCCAGAAAAAAGTTCCACTGAGGCTCCTCTTCAGATCCAGAGAGAGCATTCCATCGAAGATGTGTCTTTGAACTCTCATTCCAGTGGATATTTTAAGGACAGATGTTCCTTTGGAGGTGATCACTCATTGGCTTCTATGATCTTTTCGCCTTCCAACATCTTCAGTAGTGCTTTTGGGTATATGAAGGTTATACACCCAAACAATGTGATGGAACATCAGCACAGAAGTCTACAAAGTGGAACTTGTGATACTAATATTGAAGAAGGTGCTTGTGTGAACTCTCGTAAAGTGCAGTTTAGCAGTACCATGATAGACGCAACGAAAAAGACTCTGGTGAAATCATGTGAAAGAGAAGATGCCTCTTATACCGCTGGTCCTGCTGTTGATCCCTTTTGGCCACTTTGCTTGTATGAGCTACGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGTTAAGGACTACTCTACCACCGATATGTCTCCACGTCAGCATGATAATACTGATAATGCTGCTTGTCAGGTTGGACAACCGTTATGCAAAGAAAAGTGTGATAATTCAGCAAAAGTTCCTTGGCGTCACAATGTTATGACTTTACCAACTTACCTTGTTGGCTTAAGTACTCTAAAAGCTGATCGGTGTTCATATGATTCTGTTTTAGCACTGAGAAATGGTGAATGCTGGAAGAAGTGTTTCAGCCTTTTCTTAGCATTATCAAAGTTGTTTCAAAAGGATATTCCTGCAGATGGGCCAGTCTTGCATGGAAATGGCGGTCGCATCGAGGTCCCAAATCAACTGGATCAAGCTTTGGTTGACAATGAGGAATTCCTGGAGAAGGCTCTTTTAGTTTTCAGTCAGGAGGTCAATGCTCTTGAGGGTATGAAAAAGGCTCTTCCTGTACTGTCACTAGCTCTTGAGGCTGATCCAACATCCGTGGTTCTCTGGGTCTTTTATCTGCTTATTTACTATAGCAATATGAAGTCAGTAGGGAAGGATGACATGTTCACTTGTGCGGTCAACTACAATGATCGATCTTATGAACTTTGGATCATGTTCATCAACAGTCGGATGCAGCTAAGTGACCGACTGGTTACCTACGATCTTGCTCTTTCAGCACTTTGCCGCCATGCTTCTTCTGCCAAAGATAAAATACATGCTAGTGCTTGTATCTTAGACCTAAATTTGCAAATGGTGGATTGTCTATGCATGTCTGGGAATGTTGAGAGGGCCATTCAGAAAATTTGTGGATTCTTCTCTGCTGCCACAAATATTTATGACCCTGATTCTCCATTGCTCACTGATATTCCCACATGCCTAACAAGTCATGACAAATGTATATTGGGGATTTGCTGTGTTTACATGGTTATCTATAGGAAACTTCCTGATGCTGTAGTACTGCAGTTTGAATGTCAGAAAGAACTGTTTGCAATAGAATGGCCTTCTATTGAATTAACAGATAATGAAAAGCAGAGGGCAGTCCAACTGATGGAAGCAGTAGAAGATTCTGTATGTCAATTGCTGGATAAAAGTGAATTTGATCTCAGTTTGGCACATTTTTTTGCTCTGAACCACTTAAGGTGCGTGGCAGCTATTGACAGCTTAGAAAGGTGTAGTAATCTTCTGGGTAAATATCTTAAAATGTTCCCGTCCTGCTTAGAGCTTGTTCTAATTTCGGCAAGGGCCCACAAACATGCTCCTGGTGGCTCGCTTTTTGATGGGTTCGAGGAAGCCCTAAATAGTTGGCCAAAGGAAGTTCCGGGAATTCAATGCATCTGGAATCAATATGTTGTATATGCCCTTCAGAAAGGACAATTTGACTATGGTAAAGAACTTATAGGCCGTTGGTTTCATTCTTTTTGGCAAGTTCATTGTCTTCGAAATGGTACATTCGATGACATGGAGTGTGATAACTCAGATGGCTCACTAGGATTGGCTTCAGATTCAAATCTGCAGACACTTAATTCTGATTGTAAGCAGATGGATGTAATGTTTGGATATCTTAACCTCTCACTGTATAAGTTAATCCAAAATGATCAGATTGAAGCTCGCTTAGCCCTTGAGAGGGCATTGAAGGCTGCTGTTCCAGAATATTCTAAGCATTGCATGAGGGAGCATGCATTATTTATGCTAAGTGAGGAATCAGGATTAACGGAGAACTGTTATCATAGTGGCATGGAGAAGATTTTGAAACGTTATGTAGGTGATGCCCAAGCTTTCCCTGTGTCTCAGCCGTTATCTATGCAGTTCATTGCCAACATCAAGAAGCCAAGAGTACGACAGCTGGTTAGTAACGTATTCAGCCCATTCTCATCTAATATTTCTCTGGTCAATTCAGTTCTTGAAGGGTGGTATGGACCATCTCTTATACCGAAAATGACAGGTGAGACAAAATGTCTTGTGGATTTTGTTGAAGCCATTTTGGACATAACTCCATCCAATTATCCGTTAGCTGTTTCTGTCTGTAAGCTGTTAATTAGTGGCAACCATGAGACTGATAGTACTTCAGTCAGTGTTTTGTTCTGGGCTTGCTCAAACTTGGTCAGTGCAATCTTTCATGCTGTCCCAATTCCACCAGAGTATATATGGGTAGAAGCTGCAGAAATATTGGGTAATATGGTGAATGTTGAGGTTATTTCTGAGAGGTTTTATAAGAGAGCTTTATCTGTGTATCCTTTCTCTGTTAAGTTGTGGAAATCCTATTACATGCTTTCTATGATGACTACAGGAAATATGAACACTGTTCTGGAAACAGCAAAGGGAAAAGGTATAGAACTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1734

Amino Acids

192.15

Weight (kDa)

5.5

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 877 - 897 4.4e-09 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 5070
Acc36I ACCTGC 2 cut(s) 19, 346
AccB1I GGYRCC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 3907
AccI GTMKAC 4 cut(s) 33, 2139, 2231, 2647
AccII CGCG 3 cut(s) 20, 41, 2118
AccIII TCCGGA 1 cut(s) 1399
AclI AACGTT 2 cut(s) 1503, 4612
AcoI YGGCCR 2 cut(s) 2813, 4163
AcsI RAATTY 9 cut(s) 280, 685, 1375, 1822, 3245, 3601, 3660, 3953, 4182
AcuI CTGAAG 9 cut(s) 450, 785, 800, 2184, 2432, 2563, 4205, 4341, 4908
AcyI GRCGYC 3 cut(s) 15, 355, 2998
AflII CTTAAG 3 cut(s) 806, 3037, 3994
AflIII ACRYGT 3 cut(s) 1156, 2116, 3420
AhdI GACNNNNNGTC 1 cut(s) 4812
AhlI ACTAGT 1 cut(s) 167
AjiI CACGTC 2 cut(s) 1836, 2909
AjnI CCWGG 8 cut(s) 181, 346, 551, 1275, 1342, 1452, 3249, 4117
AleI CACNNNNGTG 2 cut(s) 221, 1043
AloI GAACNNNNNNTCC 4 cut(s) 2480, 2512, 3407, 3439
Alw21I GWGCWC 3 cut(s) 72, 111, 1434
Alw26I GTCTC 7 cut(s) 1165, 1417, 2147, 2907, 4650, 4799, 4904
AlwNI CAGNNNCTG 2 cut(s) 1459, 2162
Ama87I CYCGRG 4 cut(s) 373, 483, 675, 2213
Aor13HI TCCGGA 1 cut(s) 1399
ApaI GGGCCC 2 cut(s) 189, 4105
ApeKI GCWGC 9 cut(s) 149, 1765, 2869, 2933, 3493, 3680, 4007, 4496, 5015
ApoI RAATTY 9 cut(s) 280, 685, 1375, 1822, 3245, 3601, 3660, 3953, 4182
ArsI GACNNNNNNTTYG 4 cut(s) 569, 601, 2274, 2306
Asp700I GAANNNNTTC 3 cut(s) 2109, 2276, 3113
AspLEI GCGC 4 cut(s) 17, 22, 1110, 2411
AsuC2I CCSGG 1 cut(s) 4179
AsuHPI GGTGA 8 cut(s) 208, 1385, 2546, 2764, 3107, 4634, 4814, 5050
AsuII TTCGAA 2 cut(s) 2280, 4297
AvaI CYCGRG 4 cut(s) 373, 483, 675, 2213
AvaII GGWCC 6 cut(s) 1051, 1301, 2339, 2792, 3205, 4775
BaeGI GKGCMC 2 cut(s) 189, 4105
BaeI ACNNNNGTAYC 2 cut(s) 156, 189
BalI TGGCCA 2 cut(s) 2815, 4165
BamHI GGATCC 1 cut(s) 1346
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 7 cut(s) 9, 72, 111, 189, 1434, 1654, 4105
BarI GAAGNNNNNNTAC 2 cut(s) 4203, 4235
BbsI GAAGAC 1 cut(s) 4286
Bbv12I GWGCWC 3 cut(s) 72, 111, 1434
BbvI GCAGC 9 cut(s) 136, 1777, 2881, 2920, 3505, 3667, 4019, 4483, 5002
BceAI ACGGC 3 cut(s) 28, 4245, 4636
BcgI CGANNNNNNTGC 6 cut(s) 656, 690, 1703, 1737, 2826, 2860
BciT130I CCWGG 8 cut(s) 183, 348, 553, 1277, 1344, 1454, 3251, 4119
BciVI GTATCC 1 cut(s) 5100
BclI TGATCA 2 cut(s) 2536, 4453
BcnI CCSGG 1 cut(s) 4179
BcoDI GTCTC 7 cut(s) 1165, 1417, 2147, 2907, 4650, 4799, 4904
BcuI ACTAGT 1 cut(s) 167
BfoI RGCGCY 2 cut(s) 18, 2412
BfrI CTTAAG 3 cut(s) 806, 3037, 3994
BfuAI ACCTGC 2 cut(s) 19, 346
BfuI GTATCC 1 cut(s) 5100
BglII AGATCT 1 cut(s) 671
BlpI GCTNAGC 1 cut(s) 4471
BmcAI AGTACT 3 cut(s) 3043, 3816, 4921
Bme1390I CCNGG 9 cut(s) 183, 348, 553, 1277, 1344, 1454, 3251, 4119, 4179
Bme18I GGWCC 6 cut(s) 1051, 1301, 2339, 2792, 3205, 4775
BmeRI GACNNNNNGTC 1 cut(s) 4812
BmeT110I CYCGRG 4 cut(s) 373, 483, 675, 2213
BmgBI CACGTC 2 cut(s) 1836, 2909
BmrFI CCNGG 9 cut(s) 183, 348, 553, 1277, 1344, 1454, 3251, 4119, 4179
BpiI GAAGAC 1 cut(s) 4286
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 5 cut(s) 165, 1054, 1592, 1877, 3272
Bpu10I CCTNAGC 2 cut(s) 858, 1428
Bpu1102I GCTNAGC 1 cut(s) 4471
Bpu14I TTCGAA 2 cut(s) 2280, 4297
BpuEI CTTGAG 6 cut(s) 770, 1744, 2331, 3314, 3356, 4499
BpuMI CCSGG 1 cut(s) 4179
Bsa29I ATCGAT 2 cut(s) 1734, 3451
BsaBI GATNNNNATC 2 cut(s) 1872, 4365
BsaHI GRCGYC 3 cut(s) 15, 355, 2998
BsaI GGTCTC 1 cut(s) 1417
BsaJI CCNNGG 6 cut(s) 39, 182, 1900, 2864, 2993, 3354
BsaWI WCCGGW 1 cut(s) 1399
BsaXI ACNNNNNCTCC 2 cut(s) 2425, 2455
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 8 cut(s) 1071, 1192, 1228, 2003, 2499, 3173, 3222, 3513
Bse3DI GCAATG 4 cut(s) 316, 3710, 4519, 4668
Bse8I GATNNNNATC 2 cut(s) 1872, 4365
BseAI TCCGGA 1 cut(s) 1399
BseBI CCWGG 8 cut(s) 183, 348, 553, 1277, 1344, 1454, 3251, 4119
BseCI ATCGAT 2 cut(s) 1734, 3451
BseDI CCNNGG 6 cut(s) 39, 182, 1900, 2864, 2993, 3354
BseJI GATNNNNATC 2 cut(s) 1872, 4365
BseMI GCAATG 4 cut(s) 316, 3710, 4519, 4668
BseNI ACTGG 8 cut(s) 1071, 1192, 1228, 2003, 2499, 3173, 3222, 3513
BseRI GAGGAG 2 cut(s) 103, 2433
BseSI GKGCMC 2 cut(s) 189, 4105
BseXI GCAGC 9 cut(s) 136, 1777, 2881, 2920, 3505, 3667, 4019, 4483, 5002
BseYI CCCAGC 1 cut(s) 816
BsgI GTGCAG 4 cut(s) 135, 910, 969, 2729
Bsh1236I CGCG 3 cut(s) 20, 41, 2118
Bsh1285I CGRYCG 2 cut(s) 158, 3196
BshNI GGYRCC 1 cut(s) 14
BshVI ATCGAT 2 cut(s) 1734, 3451
BsiEI CGRYCG 2 cut(s) 158, 3196
BsiHKAI GWGCWC 3 cut(s) 72, 111, 1434
BsiHKCI CYCGRG 4 cut(s) 373, 483, 675, 2213
BsiSI CCGG 3 cut(s) 194, 1400, 4178
BslFI GGGAC 5 cut(s) 342, 555, 2041, 3191, 4967
BsmAI GTCTC 7 cut(s) 1165, 1417, 2147, 2907, 4650, 4799, 4904
BsmFI GGGAC 5 cut(s) 342, 555, 2041, 3191, 4967
BsmI GAATGC 5 cut(s) 496, 859, 1672, 2464, 3104
Bso31I GGTCTC 1 cut(s) 1417
BsoBI CYCGRG 4 cut(s) 373, 483, 675, 2213
Bsp119I TTCGAA 2 cut(s) 2280, 4297
Bsp120I GGGCCC 2 cut(s) 185, 4101
Bsp1286I GDGCHC 7 cut(s) 9, 72, 111, 189, 1434, 1654, 4105
Bsp13I TCCGGA 1 cut(s) 1399
Bsp1720I GCTNAGC 1 cut(s) 4471
BspDI ATCGAT 2 cut(s) 1734, 3451
BspEI TCCGGA 1 cut(s) 1399
BspFNI CGCG 3 cut(s) 20, 41, 2118
BspHI TCATGA 1 cut(s) 3745
BspMAI CTGCAG 5 cut(s) 918, 3166, 3822, 4374, 5020
BspMI ACCTGC 2 cut(s) 19, 346
BspQI GCTCTTC 3 cut(s) 299, 1659, 3318
BspT104I TTCGAA 2 cut(s) 2280, 4297
BspT107I GGYRCC 1 cut(s) 14
BspTI CTTAAG 3 cut(s) 806, 3037, 3994
BspTNI GGTCTC 1 cut(s) 1417
BsrDI GCAATG 4 cut(s) 316, 3710, 4519, 4668
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 8 cut(s) 1071, 1192, 1228, 2003, 2499, 3173, 3222, 3513
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 6 cut(s) 39, 182, 1900, 2864, 2993, 3354
BssNI GRCGYC 3 cut(s) 15, 355, 2998
BssT1I CCWWGG 3 cut(s) 1900, 2864, 2993
Bst2UI CCWGG 8 cut(s) 183, 348, 553, 1277, 1344, 1454, 3251, 4119
Bst6I CTCTTC 4 cut(s) 299, 1659, 2451, 3318
BstACI GRCGYC 3 cut(s) 15, 355, 2998
BstAFI CTTAAG 3 cut(s) 806, 3037, 3994
BstBI TTCGAA 2 cut(s) 2280, 4297
BstC8I GCNNGC 8 cut(s) 107, 549, 866, 1207, 4127, 4468, 4536, 4948
BstDSI CCRYGG 2 cut(s) 39, 3354
BstEII GGTNACC 2 cut(s) 1391, 3511
BstENI CCTNNNNNAGG 1 cut(s) 3254
BstFNI CGCG 3 cut(s) 20, 41, 2118
BstH2I RGCGCY 2 cut(s) 18, 2412
BstHHI GCGC 4 cut(s) 17, 22, 1110, 2411
BstMAI GTCTC 7 cut(s) 1165, 1417, 2147, 2907, 4650, 4799, 4904
BstMCI CGRYCG 2 cut(s) 158, 3196
BstNI CCWGG 8 cut(s) 183, 348, 553, 1277, 1344, 1454, 3251, 4119
BstPI GGTNACC 2 cut(s) 1391, 3511
BstSCI CCNGG 9 cut(s) 181, 346, 551, 1275, 1342, 1452, 3249, 4117, 4177
BstSLI GKGCMC 2 cut(s) 189, 4105
BstUI CGCG 3 cut(s) 20, 41, 2118
BstV1I GCAGC 9 cut(s) 136, 1777, 2881, 2920, 3505, 3667, 4019, 4483, 5002
BstV2I GAAGAC 1 cut(s) 4286
BstX2I RGATCY 4 cut(s) 671, 1346, 1920, 2451
BstXI CCANNNNNNTGG 2 cut(s) 1045, 1235
BstYI RGATCY 4 cut(s) 671, 1346, 1920, 2451
Bsu15I ATCGAT 2 cut(s) 1734, 3451
BsuI GTATCC 1 cut(s) 5100
BsuTUI ATCGAT 2 cut(s) 1734, 3451
BtgI CCRYGG 2 cut(s) 39, 3354
BtrI CACGTC 2 cut(s) 1836, 2909
BtsI GCAGTG 4 cut(s) 1457, 1911, 1981, 2307
BveI ACCTGC 2 cut(s) 19, 346
Cac8I GCNNGC 8 cut(s) 107, 549, 866, 1207, 4127, 4468, 4536, 4948
CaiI CAGNNNCTG 2 cut(s) 1459, 2162
CciI TCATGA 1 cut(s) 3745
CfoI GCGC 4 cut(s) 17, 22, 1110, 2411
Cfr10I RCCGGY 1 cut(s) 193
Cfr42I CCGCGG 1 cut(s) 42
ClaI ATCGAT 2 cut(s) 1734, 3451
CseI GACGC 5 cut(s) 344, 935, 2124, 2741, 2987
CspCI CAANNNNNGTGG 4 cut(s) 2805, 2840, 3336, 3371
DinI GGCGCC 1 cut(s) 16
DriI GACNNNNNGTC 1 cut(s) 4812
EaeI YGGCCR 2 cut(s) 2813, 4163
Eam1104I CTCTTC 4 cut(s) 299, 1659, 2451, 3318
Eam1105I GACNNNNNGTC 1 cut(s) 4812
EarI CTCTTC 4 cut(s) 299, 1659, 2451, 3318
EciI GGCGGA 2 cut(s) 59, 80
Ecl136II GAGCTC 3 cut(s) 70, 109, 1432
Eco130I CCWWGG 3 cut(s) 1900, 2864, 2993
Eco24I GRGCYC 7 cut(s) 9, 72, 111, 189, 1434, 1654, 4105
Eco31I GGTCTC 1 cut(s) 1417
Eco32I GATATC 1 cut(s) 4418
Eco47I GGWCC 6 cut(s) 1051, 1301, 2339, 2792, 3205, 4775
Eco53kI GAGCTC 3 cut(s) 70, 109, 1432
Eco57I CTGAAG 9 cut(s) 450, 785, 800, 2184, 2432, 2563, 4205, 4341, 4908
Eco88I CYCGRG 4 cut(s) 373, 483, 675, 2213
Eco91I GGTNACC 2 cut(s) 1391, 3511
EcoICRI GAGCTC 3 cut(s) 70, 109, 1432
EcoNI CCTNNNNNAGG 1 cut(s) 3254
EcoO109I RGGNCCY 5 cut(s) 53, 185, 862, 3205, 4101
EcoO65I GGTNACC 2 cut(s) 1391, 3511
EcoRI GAATTC 2 cut(s) 3245, 4182
EcoRII CCWGG 8 cut(s) 181, 346, 551, 1275, 1342, 1452, 3249, 4117
EcoRV GATATC 1 cut(s) 4418
EcoT14I CCWWGG 3 cut(s) 1900, 2864, 2993
EcoT22I ATGCAT 3 cut(s) 3629, 4193, 4540
EcoT38I GRGCYC 7 cut(s) 9, 72, 111, 189, 1434, 1654, 4105
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
ErhI CCWWGG 3 cut(s) 1900, 2864, 2993
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 2644, 2676
FaqI GGGAC 5 cut(s) 342, 555, 2041, 3191, 4967
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 1 cut(s) 3067
FbaI TGATCA 2 cut(s) 2536, 4453
FblI GTMKAC 4 cut(s) 33, 2139, 2231, 2647
FriOI GRGCYC 7 cut(s) 9, 72, 111, 189, 1434, 1654, 4105
GlaI GCGC 4 cut(s) 16, 21, 1109, 2410
GsaI CCCAGC 1 cut(s) 820
GsuI CTGGAG 5 cut(s) 165, 1054, 1592, 1877, 3272
HaeII RGCGCY 2 cut(s) 18, 2412
HapII CCGG 3 cut(s) 194, 1400, 4178
HgaI GACGC 5 cut(s) 344, 935, 2124, 2741, 2987
HhaI GCGC 4 cut(s) 17, 22, 1110, 2411
Hin1I GRCGYC 3 cut(s) 15, 355, 2998
Hin6I GCGC 4 cut(s) 15, 20, 1108, 2409
HinP1I GCGC 4 cut(s) 15, 20, 1108, 2409
HincII GTYRAC 3 cut(s) 34, 3235, 3439
HindII GTYRAC 3 cut(s) 34, 3235, 3439
HindIII AAGCTT 6 cut(s) 397, 803, 1629, 2220, 3225, 4632
HpaII CCGG 3 cut(s) 194, 1400, 4178
HphI GGTGA 8 cut(s) 208, 1385, 2546, 2764, 3107, 4634, 4814, 5050
Hpy99I CGWCG 2 cut(s) 14, 2118
HpyCH4IV ACGT 6 cut(s) 599, 1503, 1835, 2908, 4612, 4713
HpySE526I ACGT 6 cut(s) 599, 1503, 1835, 2908, 4612, 4713
Hsp92I GRCGYC 3 cut(s) 15, 355, 2998
HspAI GCGC 4 cut(s) 15, 20, 1108, 2409
KasI GGCGCC 1 cut(s) 14
Kpn2I TCCGGA 1 cut(s) 1399
Ksp22I TGATCA 2 cut(s) 2536, 4453
KspI CCGCGG 1 cut(s) 42
LguI GCTCTTC 3 cut(s) 299, 1659, 3318
LmnI GCTCC 9 cut(s) 4, 67, 75, 878, 1699, 1858, 2446, 4120, 4531
Lsp1109I GCAGC 9 cut(s) 136, 1777, 2881, 2920, 3505, 3667, 4019, 4483, 5002
MaeII ACGT 6 cut(s) 599, 1503, 1835, 2908, 4612, 4713
MaeIII GTNAC 9 cut(s) 214, 835, 1391, 1504, 2999, 3324, 3500, 3511, 4709
MfeI CAATTG 2 cut(s) 1061, 3935
MflI RGATCY 4 cut(s) 671, 1346, 1920, 2451
MhlI GDGCHC 7 cut(s) 9, 72, 111, 189, 1434, 1654, 4105
MlsI TGGCCA 2 cut(s) 2815, 4165
MluI ACGCGT 1 cut(s) 2116
MluNI TGGCCA 2 cut(s) 2815, 4165
Mly113I GGCGCC 1 cut(s) 15
MlyI GAGTC 4 cut(s) 29, 1061, 1127, 2740
MmeI TCCRAC 9 cut(s) 97, 661, 1770, 2421, 2595, 2926, 3371, 3467, 3925
Mox20I TGGCCA 2 cut(s) 2815, 4165
Mph1103I ATGCAT 3 cut(s) 3629, 4193, 4540
MroI TCCGGA 1 cut(s) 1399
MroXI GAANNNNTTC 3 cut(s) 2109, 2276, 3113
MscI TGGCCA 2 cut(s) 2815, 4165
Msp20I TGGCCA 2 cut(s) 2815, 4165
MspA1I CMGCKG 7 cut(s) 41, 149, 960, 1043, 1855, 2789, 4702
MspCI CTTAAG 3 cut(s) 806, 3037, 3994
MspI CCGG 3 cut(s) 194, 1400, 4178
MspR9I CCNGG 9 cut(s) 183, 348, 553, 1277, 1344, 1454, 3251, 4119, 4179
MteI GCGCNGCGC 1 cut(s) 18
MunI CAATTG 2 cut(s) 1061, 3935
Mva1269I GAATGC 5 cut(s) 496, 859, 1672, 2464, 3104
MvaI CCWGG 8 cut(s) 183, 348, 553, 1277, 1344, 1454, 3251, 4119
MvnI CGCG 3 cut(s) 20, 41, 2118
NarI GGCGCC 1 cut(s) 15
NciI CCSGG 1 cut(s) 4179
NdeI CATATG 1 cut(s) 3067
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 5 cut(s) 214, 1391, 2999, 3324, 3500
NsiI ATGCAT 3 cut(s) 3629, 4193, 4540
NspV TTCGAA 2 cut(s) 2280, 4297
OliI CACNNNNGTG 2 cut(s) 221, 1043
PaeI GCATGC 1 cut(s) 4538
PaeR7I CTCGAG 3 cut(s) 483, 675, 2213
PagI TCATGA 1 cut(s) 3745
PciI ACATGT 2 cut(s) 1156, 3420
PciSI GCTCTTC 3 cut(s) 299, 1659, 3318
PctI GAATGC 5 cut(s) 496, 859, 1672, 2464, 3104
PdmI GAANNNNTTC 3 cut(s) 2109, 2276, 3113
PflMI CCANNNNNTGG 1 cut(s) 3907
PfoI TCCNGGA 2 cut(s) 3249, 4177
Ple19I CGATCG 1 cut(s) 158
PleI GAGTC 4 cut(s) 29, 1061, 1126, 2740
PluTI GGCGCC 1 cut(s) 18
PpsI GAGTC 4 cut(s) 29, 1061, 1126, 2740
PpuMI RGGWCCY 1 cut(s) 3205
PscI ACATGT 2 cut(s) 1156, 3420
PsiI TTATAA 1 cut(s) 5070
Psp124BI GAGCTC 3 cut(s) 72, 111, 1434
Psp1406I AACGTT 2 cut(s) 1503, 4612
Psp5II RGGWCCY 1 cut(s) 3205
Psp6I CCWGG 8 cut(s) 181, 346, 551, 1275, 1342, 1452, 3249, 4117
PspEI GGTNACC 2 cut(s) 1391, 3511
PspFI CCCAGC 1 cut(s) 816
PspGI CCWGG 8 cut(s) 181, 346, 551, 1275, 1342, 1452, 3249, 4117
PspOMI GGGCCC 2 cut(s) 185, 4101
PspPPI RGGWCCY 1 cut(s) 3205
PspXI VCTCGAGB 1 cut(s) 483
PsrI GAACNNNNNNTAC 2 cut(s) 2650, 2682
PstI CTGCAG 5 cut(s) 918, 3166, 3822, 4374, 5020
PstNI CAGNNNCTG 2 cut(s) 1459, 2162
PsuI RGATCY 4 cut(s) 671, 1346, 1920, 2451
PvuI CGATCG 1 cut(s) 158
PvuII CAGCTG 3 cut(s) 149, 1043, 4702
SacI GAGCTC 3 cut(s) 72, 111, 1434
SacII CCGCGG 1 cut(s) 42
SalI GTCGAC 1 cut(s) 32
SapI GCTCTTC 3 cut(s) 299, 1659, 3318
ScaI AGTACT 3 cut(s) 3043, 3816, 4921
SchI GAGTC 4 cut(s) 29, 1061, 1127, 2740
ScrFI CCNGG 9 cut(s) 183, 348, 553, 1277, 1344, 1454, 3251, 4119, 4179
SduI GDGCHC 7 cut(s) 9, 72, 111, 189, 1434, 1654, 4105
SfoI GGCGCC 1 cut(s) 16
Sfr274I CTCGAG 3 cut(s) 483, 675, 2213
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 2 cut(s) 2280, 4297
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 6 cut(s) 1051, 1301, 2339, 2792, 3205, 4775
SlaI CTCGAG 3 cut(s) 483, 675, 2213
SpeI ACTAGT 1 cut(s) 167
SphI GCATGC 1 cut(s) 4538
SspDI GGCGCC 1 cut(s) 14
SspI AATATT 7 cut(s) 478, 1706, 2674, 3691, 4511, 4738, 5025
SstI GAGCTC 3 cut(s) 72, 111, 1434
StyD4I CCNGG 9 cut(s) 181, 346, 551, 1275, 1342, 1452, 3249, 4117, 4177
StyI CCWWGG 3 cut(s) 1900, 2864, 2993
TaiI ACGT 6 cut(s) 602, 1506, 1838, 2911, 4615, 4716
TaqII GACCGA 1 cut(s) 3519
TatI WGTACW 7 cut(s) 172, 1445, 1991, 3041, 3319, 3814, 4919
TauI GCSGC 5 cut(s) 20, 44, 963, 1855, 3546
TseFI GTSAC 5 cut(s) 214, 1391, 2999, 3324, 3500
TseI GCWGC 9 cut(s) 149, 1765, 2869, 2933, 3493, 3680, 4007, 4496, 5015
Tsp45I GTSAC 5 cut(s) 214, 1391, 2999, 3324, 3500
TspGWI ACGGA 3 cut(s) 3343, 4586, 4854
Van91I CCANNNNNTGG 1 cut(s) 3907
Vha464I CTTAAG 3 cut(s) 806, 3037, 3994
VpaK11BI GGWCC 6 cut(s) 1051, 1301, 2339, 2792, 3205, 4775
XagI CCTNNNNNAGG 1 cut(s) 3254
XapI RAATTY 9 cut(s) 280, 685, 1375, 1822, 3245, 3601, 3660, 3953, 4182
XbaI TCTAGA 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 5001
XhoI CTCGAG 3 cut(s) 483, 675, 2213
XmiI GTMKAC 4 cut(s) 33, 2139, 2231, 2647
XmnI GAANNNNTTC 3 cut(s) 2109, 2276, 3113
ZrmI AGTACT 3 cut(s) 3043, 3816, 4921
Zsp2I ATGCAT 3 cut(s) 3629, 4193, 4540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.