RNA processing
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39580 AT2G39580 |
| fragaria_vesca | FvH4_7g21930 FvH4_7g21930 FvH4_7g21930 FvH4_7g21930 FvH4_7g21930 FvH4_7g21930 FvH4_7g21930 |
| malus_domestica | MD07G1193600.v1.1 |
| prunus_persica | Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 Prupe.2G231200_v2.0.a1 |
| pyrus_communis | pycom07g18270 |
| rosa_chinensis | RchiOBHm_Chr1g0366201 RchiOBHm_Chr1g0366211 |
| rosa_laevigata | RLG00000027361 |
| rosa_roxburghii | Rroxscaffold_4G00290440 |
| rosa_samantha | Rh1AG336200 Rh1BG297600 Rh1BG297700 Rh1CG313500 Rh1DG329300 |
| rosa_wichuraiana | Rw1G029820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 25, 368 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 4048, 4357 |
| AccII | CGCG | 2 cut(s) | 3022, 4474 |
| AciI | CCGC | 9 cut(s) | 240, 763, 1708, 1868, 3022, 3192, 3422, 4105, 4267 |
| AclI | AACGTT | 1 cut(s) | 2118 |
| AcoI | YGGCCR | 6 cut(s) | 1048, 1324, 1828, 2750, 4039, 4169 |
| AcuI | CTGAAG | 6 cut(s) | 156, 737, 1631, 2406, 3120, 4211 |
| AcyI | GRCGYC | 1 cut(s) | 369 |
| AfaI | GTAC | 9 cut(s) | 165, 217, 288, 586, 1666, 2551, 4070, 4312, 5006 |
| AflII | CTTAAG | 2 cut(s) | 800, 4000 |
| AflIII | ACRYGT | 4 cut(s) | 1117, 1794, 2809, 3408 |
| AhlI | ACTAGT | 1 cut(s) | 2726 |
| AjnI | CCWGG | 9 cut(s) | 446, 539, 1236, 1336, 1545, 2205, 2930, 3264, 4183 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2103, 2135 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3395, 3427 |
| Alw21I | GWGCWC | 5 cut(s) | 63, 432, 949, 2466, 3322 |
| Alw26I | GTCTC | 1 cut(s) | 2675 |
| Alw44I | GTGCAC | 1 cut(s) | 945 |
| Ama87I | CYCGRG | 1 cut(s) | 663 |
| ApaLI | GTGCAC | 1 cut(s) | 945 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2258, 2290, 4400, 4432 |
| AseI | ATTAAT | 1 cut(s) | 3863 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 203, 1140, 1644, 3012, 3050 |
| AspA2I | CCTAGG | 1 cut(s) | 2257 |
| AspLEI | GCGC | 5 cut(s) | 371, 3022, 4474, 4476, 4546 |
| AspS9I | GGNCC | 8 cut(s) | 177, 273, 638, 953, 1070, 1743, 4264, 4781 |
| AsuC2I | CCSGG | 2 cut(s) | 348, 782 |
| AsuHPI | GGTGA | 6 cut(s) | 199, 1523, 2701, 2946, 4640, 4931 |
| AsuNHI | GCTAGC | 3 cut(s) | 155, 4873, 4952 |
| AvaI | CYCGRG | 1 cut(s) | 663 |
| AvaII | GGWCC | 6 cut(s) | 273, 638, 1070, 1743, 4264, 4781 |
| AvrII | CCTAGG | 1 cut(s) | 2257 |
| AxyI | CCTNAGG | 1 cut(s) | 1845 |
| BaeGI | GKGCMC | 3 cut(s) | 361, 949, 2801 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 954, 987 |
| BalI | TGGCCA | 6 cut(s) | 1050, 1326, 1830, 2752, 4041, 4171 |
| BamHI | GGATCC | 1 cut(s) | 2209 |
| BanI | GGYRCC | 2 cut(s) | 25, 368 |
| BanII | GRGCYC | 3 cut(s) | 50, 63, 3322 |
| BauI | CACGAG | 1 cut(s) | 3315 |
| BbsI | GAAGAC | 1 cut(s) | 96 |
| Bbv12I | GWGCWC | 5 cut(s) | 63, 432, 949, 2466, 3322 |
| BceAI | ACGGC | 2 cut(s) | 39, 3516 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2763, 2797 |
| BciT130I | CCWGG | 9 cut(s) | 448, 541, 1238, 1338, 1547, 2207, 2932, 3266, 4185 |
| BclI | TGATCA | 2 cut(s) | 721, 3229 |
| BcnI | CCSGG | 2 cut(s) | 348, 782 |
| BcoDI | GTCTC | 1 cut(s) | 2675 |
| BcuI | ACTAGT | 1 cut(s) | 2726 |
| BfmI | CTRYAG | 5 cut(s) | 3376, 3801, 3918, 5022, 5148 |
| BfoI | RGCGCY | 1 cut(s) | 372 |
| BfrI | CTTAAG | 2 cut(s) | 800, 4000 |
| BlnI | CCTAGG | 1 cut(s) | 2257 |
| BlpI | GCTNAGC | 2 cut(s) | 2991, 4477 |
| BmcAI | AGTACT | 1 cut(s) | 2551 |
| Bme18I | GGWCC | 6 cut(s) | 273, 638, 1070, 1743, 4264, 4781 |
| BmeT110I | CYCGRG | 1 cut(s) | 663 |
| BmgT120I | GGNCC | 8 cut(s) | 177, 273, 638, 953, 1070, 1743, 4264, 4781 |
| BmiI | GGNNCC | 8 cut(s) | 27, 178, 189, 275, 370, 1342, 2211, 2442 |
| BmtI | GCTAGC | 3 cut(s) | 159, 4877, 4956 |
| BpiI | GAAGAC | 1 cut(s) | 96 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3283, 3315, 3680, 3712 |
| BpmI | CTGGAG | 4 cut(s) | 438, 492, 1580, 4206 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2974 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2991, 4477 |
| BpuEI | CTTGAG | 7 cut(s) | 204, 1732, 2468, 2548, 2563, 3302, 3344 |
| BpuMI | CCSGG | 2 cut(s) | 348, 782 |
| Bsa29I | ATCGAT | 4 cut(s) | 599, 1041, 1173, 3439 |
| BsaAI | YACGTR | 1 cut(s) | 5008 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1674, 3234, 4056 |
| BsaHI | GRCGYC | 1 cut(s) | 369 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1573, 1603, 3016, 3046 |
| Bse118I | RCCGGY | 1 cut(s) | 4916 |
| Bse21I | CCTNAGG | 1 cut(s) | 1845 |
| Bse3DI | GCAATG | 4 cut(s) | 2662, 2891, 4525, 4918 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1674, 3234, 4056 |
| BseBI | CCWGG | 9 cut(s) | 448, 541, 1238, 1338, 1547, 2207, 2932, 3266, 4185 |
| BseCI | ATCGAT | 4 cut(s) | 599, 1041, 1173, 3439 |
| BseJI | GATNNNNATC | 3 cut(s) | 1674, 3234, 4056 |
| BseMI | GCAATG | 4 cut(s) | 2662, 2891, 4525, 4918 |
| BsePI | GCGCGC | 1 cut(s) | 4472 |
| BseRI | GAGGAG | 4 cut(s) | 1216, 1396, 2433, 2560 |
| BseSI | GKGCMC | 3 cut(s) | 361, 949, 2801 |
| BseYI | CCCAGC | 3 cut(s) | 936, 1000, 1864 |
| BsgI | GTGCAG | 1 cut(s) | 2037 |
| Bsh1236I | CGCG | 2 cut(s) | 3022, 4474 |
| BshNI | GGYRCC | 2 cut(s) | 25, 368 |
| BshVI | ATCGAT | 4 cut(s) | 599, 1041, 1173, 3439 |
| BsiHKAI | GWGCWC | 5 cut(s) | 63, 432, 949, 2466, 3322 |
| BsiHKCI | CYCGRG | 1 cut(s) | 663 |
| BsiSI | CCGG | 5 cut(s) | 347, 781, 4637, 4702, 4917 |
| BslFI | GGGAC | 8 cut(s) | 259, 1255, 1963, 2275, 2912, 3092, 4166, 4973 |
| BsmAI | GTCTC | 1 cut(s) | 2675 |
| BsmFI | GGGAC | 8 cut(s) | 259, 1255, 1963, 2275, 2912, 3092, 4166, 4973 |
| BsmI | GAATGC | 2 cut(s) | 2998, 4504 |
| BsoBI | CYCGRG | 1 cut(s) | 663 |
| Bsp1286I | GDGCHC | 8 cut(s) | 50, 63, 361, 432, 949, 2466, 2801, 3322 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2991, 4477 |
| BspACI | CCGC | 9 cut(s) | 240, 763, 1708, 1868, 3022, 3192, 3422, 4105, 4267 |
| BspDI | ATCGAT | 4 cut(s) | 599, 1041, 1173, 3439 |
| BspFNI | CGCG | 2 cut(s) | 3022, 4474 |
| BspHI | TCATGA | 1 cut(s) | 2401 |
| BspLI | GGNNCC | 8 cut(s) | 27, 178, 189, 275, 370, 1342, 2211, 2442 |
| BspMAI | CTGCAG | 1 cut(s) | 5026 |
| BspOI | GCTAGC | 3 cut(s) | 159, 4877, 4956 |
| BspT107I | GGYRCC | 2 cut(s) | 25, 368 |
| BspTI | CTTAAG | 2 cut(s) | 800, 4000 |
| BsrDI | GCAATG | 4 cut(s) | 2662, 2891, 4525, 4918 |
| BsrFI | RCCGGY | 1 cut(s) | 4916 |
| BssAI | RCCGGY | 1 cut(s) | 4916 |
| BssHII | GCGCGC | 1 cut(s) | 4472 |
| BssNI | GRCGYC | 1 cut(s) | 369 |
| BssSI | CACGAG | 1 cut(s) | 3315 |
| BssT1I | CCWWGG | 5 cut(s) | 211, 1524, 2257, 2801, 4351 |
| Bst2BI | CACGAG | 1 cut(s) | 3315 |
| Bst2UI | CCWGG | 9 cut(s) | 448, 541, 1238, 1338, 1547, 2207, 2932, 3266, 4185 |
| Bst6I | CTCTTC | 3 cut(s) | 2004, 2698, 3668 |
| BstACI | GRCGYC | 1 cut(s) | 369 |
| BstAFI | CTTAAG | 2 cut(s) | 800, 4000 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 260, 4499 |
| BstBAI | YACGTR | 1 cut(s) | 5008 |
| BstDSI | CCRYGG | 1 cut(s) | 613 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 171, 1550 |
| BstFNI | CGCG | 2 cut(s) | 3022, 4474 |
| BstH2I | RGCGCY | 1 cut(s) | 372 |
| BstHHI | GCGC | 5 cut(s) | 371, 3022, 4474, 4476, 4546 |
| BstMAI | GTCTC | 1 cut(s) | 2675 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 260, 1616, 2721, 3326, 3521, 4478, 4499, 4552, 4908 |
| BstNI | CCWGG | 9 cut(s) | 448, 541, 1238, 1338, 1547, 2207, 2932, 3266, 4185 |
| BstNSI | RCATGY | 8 cut(s) | 1121, 2764, 2813, 3412, 3579, 3622, 3726, 4544 |
| BstSFI | CTRYAG | 5 cut(s) | 3376, 3801, 3918, 5022, 5148 |
| BstSLI | GKGCMC | 3 cut(s) | 361, 949, 2801 |
| BstSNI | TACGTA | 1 cut(s) | 5008 |
| BstUI | CGCG | 2 cut(s) | 3022, 4474 |
| BstV2I | GAAGAC | 1 cut(s) | 96 |
| BstX2I | RGATCY | 7 cut(s) | 659, 1555, 1780, 1810, 2209, 2451, 4346 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 547, 1196, 3898 |
| BstYI | RGATCY | 7 cut(s) | 659, 1555, 1780, 1810, 2209, 2451, 4346 |
| Bsu15I | ATCGAT | 4 cut(s) | 599, 1041, 1173, 3439 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1845 |
| BsuTUI | ATCGAT | 4 cut(s) | 599, 1041, 1173, 3439 |
| BtgI | CCRYGG | 1 cut(s) | 613 |
| BtsI | GCAGTG | 6 cut(s) | 150, 166, 1011, 1969, 3669, 4909 |
| CciI | TCATGA | 1 cut(s) | 2401 |
| CfoI | GCGC | 5 cut(s) | 371, 3022, 4474, 4476, 4546 |
| Cfr10I | RCCGGY | 1 cut(s) | 4916 |
| Cfr13I | GGNCC | 8 cut(s) | 177, 273, 638, 953, 1070, 1743, 4264, 4781 |
| ClaI | ATCGAT | 4 cut(s) | 599, 1041, 1173, 3439 |
| CsiI | ACCWGGT | 1 cut(s) | 1336 |
| Csp6I | GTAC | 9 cut(s) | 164, 216, 287, 585, 1665, 2550, 4069, 4311, 5005 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3664, 3699 |
| CviQI | GTAC | 9 cut(s) | 164, 216, 287, 585, 1665, 2550, 4069, 4311, 5005 |
| DinI | GGCGCC | 1 cut(s) | 370 |
| EaeI | YGGCCR | 6 cut(s) | 1048, 1324, 1828, 2750, 4039, 4169 |
| Eam1104I | CTCTTC | 3 cut(s) | 2004, 2698, 3668 |
| EarI | CTCTTC | 3 cut(s) | 2004, 2698, 3668 |
| Ecl136II | GAGCTC | 2 cut(s) | 61, 3320 |
| Eco105I | TACGTA | 1 cut(s) | 5008 |
| Eco130I | CCWWGG | 5 cut(s) | 211, 1524, 2257, 2801, 4351 |
| Eco24I | GRGCYC | 3 cut(s) | 50, 63, 3322 |
| Eco32I | GATATC | 1 cut(s) | 4424 |
| Eco47I | GGWCC | 6 cut(s) | 273, 638, 1070, 1743, 4264, 4781 |
| Eco53kI | GAGCTC | 2 cut(s) | 61, 3320 |
| Eco57I | CTGAAG | 6 cut(s) | 156, 737, 1631, 2406, 3120, 4211 |
| Eco81I | CCTNAGG | 1 cut(s) | 1845 |
| Eco88I | CYCGRG | 1 cut(s) | 663 |
| EcoICRI | GAGCTC | 2 cut(s) | 61, 3320 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 171, 1550 |
| EcoRI | GAATTC | 2 cut(s) | 1059, 2500 |
| EcoRII | CCWGG | 9 cut(s) | 446, 539, 1236, 1336, 1545, 2205, 2930, 3264, 4183 |
| EcoRV | GATATC | 1 cut(s) | 4424 |
| EcoT14I | CCWWGG | 5 cut(s) | 211, 1524, 2257, 2801, 4351 |
| EcoT22I | ATGCAT | 4 cut(s) | 1187, 1842, 2841, 3620 |
| EcoT38I | GRGCYC | 3 cut(s) | 50, 63, 3322 |
| EgeI | GGCGCC | 1 cut(s) | 370 |
| EheI | GGCGCC | 1 cut(s) | 370 |
| ErhI | CCWWGG | 5 cut(s) | 211, 1524, 2257, 2801, 4351 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4143, 4175 |
| FaqI | GGGAC | 8 cut(s) | 259, 1255, 1963, 2275, 2912, 3092, 4166, 4973 |
| FauNDI | CATATG | 1 cut(s) | 3004 |
| FbaI | TGATCA | 2 cut(s) | 721, 3229 |
| FriOI | GRGCYC | 3 cut(s) | 50, 63, 3322 |
| GlaI | GCGC | 5 cut(s) | 370, 3021, 4473, 4475, 4545 |
| GsaI | CCCAGC | 3 cut(s) | 940, 1004, 1868 |
| GsuI | CTGGAG | 4 cut(s) | 438, 492, 1580, 4206 |
| HaeII | RGCGCY | 1 cut(s) | 372 |
| HapII | CCGG | 5 cut(s) | 347, 781, 4637, 4702, 4917 |
| HhaI | GCGC | 5 cut(s) | 371, 3022, 4474, 4476, 4546 |
| Hin1I | GRCGYC | 1 cut(s) | 369 |
| Hin6I | GCGC | 5 cut(s) | 369, 3020, 4472, 4474, 4544 |
| HinP1I | GCGC | 5 cut(s) | 369, 3020, 4472, 4474, 4544 |
| HincII | GTYRAC | 4 cut(s) | 1897, 2612, 3203, 4678 |
| HindII | GTYRAC | 4 cut(s) | 1897, 2612, 3203, 4678 |
| HindIII | AAGCTT | 3 cut(s) | 797, 1617, 3213 |
| HpaI | GTTAAC | 2 cut(s) | 1897, 4678 |
| HpaII | CCGG | 5 cut(s) | 347, 781, 4637, 4702, 4917 |
| HphI | GGTGA | 6 cut(s) | 199, 1523, 2701, 2946, 4640, 4931 |
| Hpy99I | CGWCG | 3 cut(s) | 113, 122, 2474 |
| HpyCH4IV | ACGT | 8 cut(s) | 907, 1794, 2118, 2320, 3503, 3563, 4313, 5007 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 260, 1616, 2721, 3326, 3521, 4478, 4499, 4552, 4908 |
| HpySE526I | ACGT | 8 cut(s) | 907, 1794, 2118, 2320, 3503, 3563, 4313, 5007 |
| Hsp92I | GRCGYC | 1 cut(s) | 369 |
| HspAI | GCGC | 5 cut(s) | 369, 3020, 4472, 4474, 4544 |
| KasI | GGCGCC | 1 cut(s) | 368 |
| Ksp22I | TGATCA | 2 cut(s) | 721, 3229 |
| KspAI | GTTAAC | 2 cut(s) | 1897, 4678 |
| LmnI | GCTCC | 6 cut(s) | 58, 140, 2370, 2446, 4615, 4639 |
| MabI | ACCWGGT | 1 cut(s) | 1336 |
| MaeII | ACGT | 8 cut(s) | 907, 1794, 2118, 2320, 3503, 3563, 4313, 5007 |
| MflI | RGATCY | 7 cut(s) | 659, 1555, 1780, 1810, 2209, 2451, 4346 |
| MhlI | GDGCHC | 8 cut(s) | 50, 63, 361, 432, 949, 2466, 2801, 3322 |
| MlsI | TGGCCA | 6 cut(s) | 1050, 1326, 1830, 2752, 4041, 4171 |
| MluNI | TGGCCA | 6 cut(s) | 1050, 1326, 1830, 2752, 4041, 4171 |
| Mly113I | GGCGCC | 1 cut(s) | 369 |
| MlyI | GAGTC | 6 cut(s) | 1088, 2626, 2677, 3208, 3654, 4197 |
| Mox20I | TGGCCA | 6 cut(s) | 1050, 1326, 1830, 2752, 4041, 4171 |
| Mph1103I | ATGCAT | 4 cut(s) | 1187, 1842, 2841, 3620 |
| MroXI | GAANNNNTTC | 5 cut(s) | 203, 1140, 1644, 3012, 3050 |
| MscI | TGGCCA | 6 cut(s) | 1050, 1326, 1830, 2752, 4041, 4171 |
| MslI | CAYNNNNRTG | 6 cut(s) | 349, 2834, 2850, 3003, 3123, 4116 |
| Msp20I | TGGCCA | 6 cut(s) | 1050, 1326, 1830, 2752, 4041, 4171 |
| MspA1I | CMGCKG | 4 cut(s) | 1868, 3192, 4269, 4708 |
| MspCI | CTTAAG | 2 cut(s) | 800, 4000 |
| MspI | CCGG | 5 cut(s) | 347, 781, 4637, 4702, 4917 |
| Mva1269I | GAATGC | 2 cut(s) | 2998, 4504 |
| MvaI | CCWGG | 9 cut(s) | 448, 541, 1238, 1338, 1547, 2207, 2932, 3266, 4185 |
| MvnI | CGCG | 2 cut(s) | 3022, 4474 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 260, 1616, 2721, 3326, 3521, 4478, 4499, 4552, 4908 |
| NarI | GGCGCC | 1 cut(s) | 369 |
| NciI | CCSGG | 2 cut(s) | 348, 782 |
| NdeI | CATATG | 1 cut(s) | 3004 |
| NheI | GCTAGC | 3 cut(s) | 155, 4873, 4952 |
| NlaIV | GGNNCC | 8 cut(s) | 27, 178, 189, 275, 370, 1342, 2211, 2442 |
| NmeAIII | GCCGAG | 1 cut(s) | 731 |
| NmuCI | GTSAC | 6 cut(s) | 466, 1412, 1498, 1511, 3131, 3312 |
| NsiI | ATGCAT | 4 cut(s) | 1187, 1842, 2841, 3620 |
| NspI | RCATGY | 8 cut(s) | 1121, 2764, 2813, 3412, 3579, 3622, 3726, 4544 |
| PaeI | GCATGC | 1 cut(s) | 3579 |
| PaeR7I | CTCGAG | 1 cut(s) | 663 |
| PagI | TCATGA | 1 cut(s) | 2401 |
| PauI | GCGCGC | 1 cut(s) | 4472 |
| PciI | ACATGT | 3 cut(s) | 1117, 2809, 3408 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 117, 1791 |
| PctI | GAATGC | 2 cut(s) | 2998, 4504 |
| PdmI | GAANNNNTTC | 5 cut(s) | 203, 1140, 1644, 3012, 3050 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 4048, 4357 |
| PfoI | TCCNGGA | 1 cut(s) | 780 |
| PleI | GAGTC | 6 cut(s) | 1087, 2625, 2677, 3207, 3654, 4196 |
| PluTI | GGCGCC | 1 cut(s) | 372 |
| PpsI | GAGTC | 6 cut(s) | 1087, 2625, 2677, 3207, 3654, 4196 |
| Ppu21I | YACGTR | 1 cut(s) | 5008 |
| PscI | ACATGT | 3 cut(s) | 1117, 2809, 3408 |
| PshBI | ATTAAT | 1 cut(s) | 3863 |
| Psp124BI | GAGCTC | 2 cut(s) | 63, 3322 |
| Psp1406I | AACGTT | 1 cut(s) | 2118 |
| Psp6I | CCWGG | 9 cut(s) | 446, 539, 1236, 1336, 1545, 2205, 2930, 3264, 4183 |
| PspFI | CCCAGC | 3 cut(s) | 936, 1000, 1864 |
| PspGI | CCWGG | 9 cut(s) | 446, 539, 1236, 1336, 1545, 2205, 2930, 3264, 4183 |
| PspN4I | GGNNCC | 8 cut(s) | 27, 178, 189, 275, 370, 1342, 2211, 2442 |
| PspPI | GGNCC | 8 cut(s) | 177, 273, 638, 953, 1070, 1743, 4264, 4781 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4746, 4778 |
| PstI | CTGCAG | 1 cut(s) | 5026 |
| PsuI | RGATCY | 7 cut(s) | 659, 1555, 1780, 1810, 2209, 2451, 4346 |
| PteI | GCGCGC | 1 cut(s) | 4472 |
| PvuII | CAGCTG | 1 cut(s) | 4708 |
| RsaI | GTAC | 9 cut(s) | 165, 217, 288, 586, 1666, 2551, 4070, 4312, 5006 |
| RsaNI | GTAC | 9 cut(s) | 164, 216, 287, 585, 1665, 2550, 4069, 4311, 5005 |
| RseI | CAYNNNNRTG | 6 cut(s) | 349, 2834, 2850, 3003, 3123, 4116 |
| SacI | GAGCTC | 2 cut(s) | 63, 3322 |
| Sau96I | GGNCC | 8 cut(s) | 177, 273, 638, 953, 1070, 1743, 4264, 4781 |
| ScaI | AGTACT | 1 cut(s) | 2551 |
| SchI | GAGTC | 6 cut(s) | 1088, 2626, 2677, 3208, 3654, 4197 |
| SduI | GDGCHC | 8 cut(s) | 50, 63, 361, 432, 949, 2466, 2801, 3322 |
| SexAI | ACCWGGT | 1 cut(s) | 1336 |
| SfcI | CTRYAG | 5 cut(s) | 3376, 3801, 3918, 5022, 5148 |
| SfoI | GGCGCC | 1 cut(s) | 370 |
| Sfr274I | CTCGAG | 1 cut(s) | 663 |
| SinI | GGWCC | 6 cut(s) | 273, 638, 1070, 1743, 4264, 4781 |
| SlaI | CTCGAG | 1 cut(s) | 663 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 349, 2834, 2850, 3003, 3123, 4116 |
| SnaBI | TACGTA | 1 cut(s) | 5008 |
| SpeI | ACTAGT | 1 cut(s) | 2726 |
| SphI | GCATGC | 1 cut(s) | 3579 |
| SsiI | CCGC | 9 cut(s) | 240, 763, 1708, 1868, 3022, 3192, 3422, 4105, 4267 |
| SspDI | GGCGCC | 1 cut(s) | 368 |
| SspI | AATATT | 4 cut(s) | 2479, 4517, 4622, 5041 |
| SstI | GAGCTC | 2 cut(s) | 63, 3322 |
| StyI | CCWWGG | 5 cut(s) | 211, 1524, 2257, 2801, 4351 |
| TaiI | ACGT | 8 cut(s) | 910, 1797, 2121, 2323, 3506, 3566, 4316, 5010 |
| TaqII | GACCGA | 2 cut(s) | 261, 3507 |
| TatI | WGTACW | 2 cut(s) | 1664, 2549 |
| TauI | GCSGC | 2 cut(s) | 766, 1871 |
| TseFI | GTSAC | 6 cut(s) | 466, 1412, 1498, 1511, 3131, 3312 |
| Tsp45I | GTSAC | 6 cut(s) | 466, 1412, 1498, 1511, 3131, 3312 |
| TspGWI | ACGGA | 6 cut(s) | 127, 274, 602, 2318, 2458, 5095 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 4048, 4357 |
| Vha464I | CTTAAG | 2 cut(s) | 800, 4000 |
| VneI | GTGCAC | 1 cut(s) | 945 |
| VpaK11BI | GGWCC | 6 cut(s) | 273, 638, 1070, 1743, 4264, 4781 |
| VspI | ATTAAT | 1 cut(s) | 3863 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 171, 1550 |
| XbaI | TCTAGA | 2 cut(s) | 1330, 4664 |
| XceI | RCATGY | 8 cut(s) | 1121, 2764, 2813, 3412, 3579, 3622, 3726, 4544 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3862, 5007 |
| XhoI | CTCGAG | 1 cut(s) | 663 |
| XmaJI | CCTAGG | 1 cut(s) | 2257 |
| XmnI | GAANNNNTTC | 5 cut(s) | 203, 1140, 1644, 3012, 3050 |
| ZrmI | AGTACT | 1 cut(s) | 2551 |
| Zsp2I | ATGCAT | 4 cut(s) | 1187, 1842, 2841, 3620 |