MD07G1193600.v1.1

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0003732
Physical Location & Seq
Reverse (-)
27332195 .. 27341729
9535 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1193600.v1.1.491

Sequence Viewer

Length: 5508 bp
ATGGACTCAACAATGGAGGACGCAACAGCCGCCACGCCAACGGTGTCGTGGGAGCTGCCGCCGCCTCCTCCCAACGCGAACCCTAACTCGGAGCTCCCTTCTTCCGATCCTCCCAAAACCAGAGAAGAGGGCGAGCTGTCTTCCGACGATGATGACGACGACAATACTATTTGCTCTGCTCCACATTCCACGGGTATCAGCGTGCCTCCTTCAGGGGCTGTGCCTGTTCAACCATTGAACAAACTGACTCAAGGCATTCAAGTTGGGAAGGCTGTATGTGGAAATGATCCTGCAAGCTCTGCTGATATTCAAACCCAAACATCCATACAGTCTACATCCCAGAAGAGCAATGATACAAACCGAATACCATTAAAATCTGCCACACCTGGATGGGGTGCCCCTATGGGGTCCAACGATAATCTTGTTATAAACTTCTCAGACGATGATAGTCACAGTGATTCTGAAGAAACAGAGCACAGGAAAGAAAAAGCTAGAGAAACTAAAAGTCATGTGACTGGAGTGGTTTTTAATGGAAAACCACCTACTTCATCACTTGCAAGATCAAACAAGTTACAACAGACAGCCAGGAATGTGGACAAAGTAATGCCTAAAAAATTGGGTATGAATCGCACTTTTATCTCATCAATGTCCAAAATCCGCGGAGCAAATTTTCGGGATTCTGGTCCTTCATCAGTTAATCAAGGATCTCGAGTTAGAAATTATGATTCCATGAACAAAAATTTAGTGAGCCAAGAGCGTGGACGTGATCAAGGTGCGGGCTTGAACAATAGTAAACTTCAGGACTTGCGGCATCAGATACGTGATCAAGGTGCGGGCTTGAACACCAGTAAACTTCAAGACTTGCGGCATCAGATTGCACTCAGGGAAAGTGAACTAAAGCTCAAGTCTGCCCAGAGAACTAAAGAATCAATTACATGTAGGGACGATAATGCTGCAAGCCAACACAGAGATGGAGCTAGTAAATCCAGTGTGAGATATTCTGATGTTACACAGATAGAACCAAAAGAGCCAGATAAGAAACGCTTGAAAGTTGGTGGCCCTTTTTCCACCCAGCCAAGTGTTCAAGGCCCACAAGATGTACCTGTTGCAAAATCTATTTTATCATCAAAAGTCTCAGCAGCGGAGGACAATGGTCCAATGAACAGAGTTAAGGTTGATCATGGCCAGAAAGGAATTCCTGGTCCAACAGAGTTAAGCATCGTAGAATGGAAAAATCAAAATGATAAACATGTTGCTGCTACATCAGAAAATATACATAGTGGAGTGAAAGATGGTGCTGGCATCAATATTAAAGTCATCCAATCCGATAGGAAGAGCAAGCTGGTGGATCCTTCTACACTAAACAAGGTGACATCACCAGAAAGTGTGACTTGCAATAATTTGCCGAAGAACTCAGAGACTATGGAATTGAATCATACACATGGGGATGATCGCCTTCTAGAACCAGGTTCCTTCTTGAACAGATCAACCTCCGGAAAGAATAAAATGAGAAGTTCTGACCATCAGGAAGTCACATCCAATGACAAGAAGCTTGATCCCTCCTCCAAGATATGTCAGGCATTTCTAAACAATGCAAGCCTCTCGAACTGTTTTGGTAATGCAAAGGTTACAGGACAGGGAGACATAGATATACATTCCTTGTTTGAAATTGAGGAAACATTGGACAAGGATCTGGAGGAAGCACAAGAACACAGGCGAAAGTGTGAAATTGAAGAAAGAAATGCTCTGAAAGCTTATCGTAAAGCACAGAGGGATGTTCTTGAGGCCAATGCTAGGTGTTCTGATCTATACCGCAAAAGAGAAGTATATTCTGCCAACTTGAGGTCTTTTATTTTGGACAATTCCAGTTTGCTATGGTCGTTAAGGCAGAATGACCAAGCTGGAATTGGGTTGGATCATGCTAATAACCTGACTAGAAATGTGAATCTAATACCTACATCAAGCCATCAGATGCATCCTGAGCATAGTGGTTTTAACCCAGCAGCGTGTGATTCAGACATCCAATGTGTTAACAGTGCTCACAACACCTCATACAAGCATTTGGGTGGACAAAACATGGGGTCAGAACCATGTAGCGAACCAGATGCTAGTACATCAGAGCCATTGCCTCTTCTAGGCAAAAACGGCGCAGATGTGTCCTCTCCCTCCAATGAACCGAATAATTCGGCAGATAATGATGATGAGAGATATTCATTTGAAAATGAATCTGTTCAACCTAAAGACATGGACCTTGGAGACAAGCAAAAGGACATAGATCAGGAATCAAATAGAAAAATGTCCATTGATAACTCCCAGGATCCTGTGCTTCTCGAAAGAATGTTGAGGTCTAAACTATTTGCAAAGCTAGGTACAAAAACATTGTCAAAGAATAGTAGTTCTTGTAATGGCACAGAACTTTCAGTGGAAGAAGGGGCTGAAAATGATTTCAGAACGGAAAAAACCAAAGAAATTAAAGGGAGTTTTTCTTTCTCTGAAGTGGAAAAGAATCAACAATCTGATGATGAAGGAATGGATGGGCTCGAAAAAAGTTCCTCCGAGCCTCCTCTTGAGATTCAAAGAGAGCACTCCGTTGAAAATCTTTCTGTGAACTCTCACTCCAATTTATATTCGGAGGATAGGTTTTACTTCAGAGGTAACATCTTAAGGACTGCTTTTGGGTATATGAAAGTTATATGCCCAAAAAGTTTTATAGAACCTCAAGCTAGAAGTCAACAGCGTCCAACTTGTATCAACCCCGAGAATATCCGGTCCAGCAGTGCCATGGTAGAACCACCGGAAGATACTCTGGTAGAATTATCTGGAAGAGAAGTTGGATCTTATAGCACTGGTCCCGCTGTTGATCCCTTTTGGCCACTCTGCTTGTATGAGCTTCGAGGAAAATGCAACAATGATGACTGTCCATGGCAACATGTTAGGGACTATAACACAACTTTGTATCAAGATCAGAATGATAACTCTGATAGTGCTGATTGTCAGGTTGGATCAACATTGCGTCGAAAAAAGTGTGATGGTTCAACAAAAGCCCCCTTGTATCGCAATGTTATATCTTCGCCAACTTATCTAGTTGGCTTAGGTATTCTGAAAACTGATCTGCATTCATATGAATCTGTTCTAGCACGGCGAAATGGACAATTCTGGAAAAAGTGTTTCAGCCATTTCTTGGTGTTGTCAAATTTGTTTCGGAAAGATATTTCTGCGGATGTACCATTCTTGCATGGAAATGACGGTCACATAGAGGCCCCTGTGAGTTTGAACAGACAGTCATCGTTTTTCCAGAATAGCAACGGAGGAGTGGATAAACTCACACAAGCTTTGGGTGACAATGATCAATACCTGGAGATTGCCCTATTAATTTTCAGCCAGGAGGCTAATGAACTTGAGGGCATGAGAAAGGCTCTCCCTGTGCTGTCACGAGCTCTTGAGGCAGAACCAACATCCATTATTCTCTGGATTTTTTATCTTCTTATTTACTATAGCAATATGAAGTCAGTAGGGAAAGATGACATGTTCTCCTGTGCGGTACGCTGTTGCATAATTCCTACTCTTATGACTTATCTTTTATGGAGCATGAATACTGGGGGCAGTCTCCGCATGTTTTCGCGGATACACCCTTATAGGTATTACAGCCATACAGGCAACCCTATATGTTCTCAGTTAGCCTATAAGAAATTGAAACTTTTGCCTGGAAACACTTTGCCTCTTGTTCTTCAGGTAAAATACAATGATCGATCTTATGAACTTTGGCTCATGTGCATCAACAGTCGGGTGCAGCTTGACGACCGGTTGATAACATATGATGTCGCCCTCTCAACACTGTGCCACGATGCTCCTGATTCTGGCATAGATGGAATGCATGCTAGTGCATGCATCTTAGACCTAGTTTTGCAAATGATGGATTGTTTATGCATGTCTGGTAACATTGAGAAGGCCATTCAGAAAGTCTTTGGACTCTTCCCCATTGCTGAAAATTTTGATGACCCTAATTCCCTCTCGCTCTCTAATATACTCACATGCCTAAGTATTTATGACAAATGTATATTAGGGGTTTGTTGTGTTTACTTGGTTATTTACAGGAAACTTCCTGATGCTGTATTGCAGCAGTTTGAATGTCAGAAAGAACTCTCTGAATTTGAATGGCCTTCCATGGAATTAGTAGGTGATGAGAAGCAGAGGGCTATCATGCTGATGGAAACAGTAGTAGGTTCTGTAGACTCATACATGAAAATTGAATCACTTGAGAAAAGTGAATCTAGTCTCAAATTGGCACATTTCATTGCTCTCAACCACTTAAAGTGCATGGCAGCTCTTGACAGCTTAGAAAGATGTAGGAACCTCTTGGATAAATATCTTACTTTGTACCCATCCTGCTTAGAACTTGTTTTAATATCAGCTCGGGCACATAAACATGAGCCCGGGGATTCGCTTTTTGAGAGATTTGAAGAAGCCCTTGCTGAGTGGCCAAAAGAAGTCCCTGGAATCCAGTGTGTATGGAATCAATACGTTGAGTGTGCCCTTCAGGATGGAAGATTTGATTTGGCTAAAGAAGTATTGGACCGCTGGTTTCGTTCTGATTGGAAAGTTCACTATCTTCAAAATGGTACATTGGATGGAATGAAACATGTTAACTCAAATAACTCTCTGGGAGATTCAGTTCGGCAGGCACTCGGTTCCAATCCTAATCGGATGGACGTAATGTTTGGACATCTTAATCTAGCTCTGCACAATCTCTTGCAGAATGACCACATTGAAGCTCGCTCAGCCCTTGATAGGGCACTGAATGCTGCTGTTCCACAATTCTTGAAGCATTGTGTTAGAGAACATGCATCGTTTATGCTTACTGATGAATCTTTGTTAAAGGAGAATGGTTGCATAAGTGGCATACAGAAGATTTTGGAGCACTATTTAGGTGTTTCTCAGGCTTTCCCTACCTCTGAGCCATTATCAAGAAATTTCGTTAACAACATCAAGAAGCCAAGAGTCCGGCAGCTAGTCGGTAATATCTTCAGTCCACTTTCATCTGATTTTTCTCTGGTGAATTTGGTTCTTGAAGTATGGTATGGACCATCTCTTTTACCGGAAAAGTTCGGTGAGCAAAAAAATCTGGTGGATTTTGTTGAAGCCATCTTGGACATAACTCCATCCAACTATCAGTTAGCTGTTTCTGTATGTAAGCTGTTAAGCAGCGGCAGCAATGCAGGCGATGTTACTTCTCTCAGCGCTTTGTTTTGGGCTAGCTCGAACTTGGTCAGTGCAATTTTACATGCTGTCCCAATTCCACCGGAGAATGTATGGGTTGAAGCTGCGGAAACTTTGGGCAATATTGCTGGCGTGGAGGTTATTTCTGAGAGGTTTCATGAGAGAGCTTTATCTGTATATCCTTTCTCTGTTAAGTTGTGGAAGTCCTACCAAAAACTTTCTATGATGACTACAGGAAATGGGAATGCTGTCGTGGAAGCAGCAAAAGAAAAAGGTATACAACTCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1836

Amino Acids

203.84

Weight (kDa)

5.68

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 959 - 979 2.7e-09 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 3181
AccI GTMKAC 3 cut(s) 332, 4230, 5494
AccII CGCG 3 cut(s) 77, 660, 3622
AccIII TCCGGA 1 cut(s) 1493
AcoI YGGCCR 3 cut(s) 1183, 2870, 4478
AcsI RAATTY 8 cut(s) 667, 739, 1194, 3193, 3988, 4148, 4969, 5056
AcuI CTGAAG 8 cut(s) 195, 483, 782, 2514, 2632, 3713, 4520, 5008
AfaI GTAC 7 cut(s) 1101, 2113, 2371, 3225, 3543, 4379, 4621
AfeI AGCGCT 1 cut(s) 5239
AflII CTTAAG 1 cut(s) 2662
AflIII ACRYGT 5 cut(s) 935, 1249, 2929, 3525, 4639
AgeI ACCGGT 1 cut(s) 3801
AjiI CACGTC 1 cut(s) 764
AjnI CCWGG 9 cut(s) 385, 584, 1198, 1465, 2313, 3354, 3381, 3703, 4492
AloI GAACNNNNNNTCC 4 cut(s) 2600, 2632, 4656, 4688
Alw21I GWGCWC 6 cut(s) 96, 477, 2041, 2586, 3439, 4920
Alw26I GTCTC 6 cut(s) 1138, 1412, 1635, 2250, 3611, 4280
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 4 cut(s) 708, 2756, 4413, 4433
Aor13HI TCCGGA 1 cut(s) 1493
Aor51HI AGCGCT 1 cut(s) 5239
AoxI GGCC 9 cut(s) 1057, 1087, 1183, 1785, 2870, 3258, 3948, 4157, 4478
ApoI RAATTY 8 cut(s) 667, 739, 1194, 3193, 3988, 4148, 4969, 5056
ArsI GACNNNNNNTTYG 4 cut(s) 2366, 2398, 4700, 4732
AseI ATTAAT 1 cut(s) 3371
AsiGI ACCGGT 1 cut(s) 3801
Asp700I GAANNNNTTC 2 cut(s) 2229, 3129
AspLEI GCGC 2 cut(s) 2150, 5240
AsuC2I CCSGG 2 cut(s) 4434, 4435
AsuHPI GGTGA 6 cut(s) 1368, 1381, 3350, 4190, 5065, 5120
AsuNHI GCTAGC 1 cut(s) 5252
AvaI CYCGRG 4 cut(s) 708, 2756, 4413, 4433
AvaII GGWCC 9 cut(s) 408, 683, 1154, 1202, 2248, 2769, 2849, 4573, 5081
BaeGI GKGCMC 4 cut(s) 400, 4420, 4534, 4795
BaeI ACNNNNGTAYC 2 cut(s) 2793, 2826
BalI TGGCCA 3 cut(s) 1185, 2872, 4480
BamHI GGATCC 2 cut(s) 1348, 2317
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 4 cut(s) 96, 2541, 3439, 4434
BauI CACGAG 1 cut(s) 3432
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 6 cut(s) 96, 477, 2041, 2586, 3439, 4920
BceAI ACGGC 2 cut(s) 2161, 3155
BcgI CGANNNNNNTGC 8 cut(s) 935, 969, 1584, 1618, 2087, 2121, 2883, 2917
BciT130I CCWGG 9 cut(s) 387, 586, 1200, 1467, 2315, 3356, 3383, 3705, 4494
BciVI GTATCC 1 cut(s) 3618
BclI TGATCA 4 cut(s) 766, 823, 1177, 3346
BcnI CCSGG 2 cut(s) 4434, 4435
BcoDI GTCTC 6 cut(s) 1138, 1412, 1635, 2250, 3611, 4280
BfmI CTRYAG 3 cut(s) 3493, 4227, 5448
BfoI RGCGCY 1 cut(s) 5241
BfrI CTTAAG 1 cut(s) 2662
BfuI GTATCC 1 cut(s) 3618
BglI GCCNNNNNGGC 1 cut(s) 3654
BlpI GCTNAGC 1 cut(s) 4777
Bme18I GGWCC 9 cut(s) 408, 683, 1154, 1202, 2248, 2769, 2849, 4573, 5081
BmeT110I CYCGRG 4 cut(s) 708, 2756, 4413, 4433
BmgBI CACGTC 1 cut(s) 764
BmiI GGNNCC 9 cut(s) 397, 409, 1350, 1471, 2319, 2851, 3261, 4352, 4690
BmrI ACTGGG 1 cut(s) 3606
BmtI GCTAGC 1 cut(s) 5256
BmuI ACTGGG 1 cut(s) 3606
BoxI GACNNNNGTC 1 cut(s) 1152
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 3400, 3432
BpmI CTGGAG 3 cut(s) 537, 1715, 3377
Bpu10I CCTNAGC 2 cut(s) 1980, 3091
Bpu1102I GCTNAGC 1 cut(s) 4777
BpuEI CTTGAG 9 cut(s) 234, 887, 1802, 1861, 2588, 2703, 3419, 3461, 4277
BpuMI CCSGG 2 cut(s) 4434, 4435
Bsa29I ATCGAT 1 cut(s) 3748
BsaAI YACGTR 1 cut(s) 821
BsaBI GATNNNNATC 1 cut(s) 4365
BsaWI WCCGGW 6 cut(s) 1493, 2766, 2794, 3801, 5095, 5299
BsaXI ACNNNNNCTCC 8 cut(s) 2600, 2624, 2630, 2654, 3515, 3545, 4656, 4686
Bse118I RCCGGY 1 cut(s) 3801
Bse1I ACTGG 7 cut(s) 520, 846, 987, 1866, 2851, 3601, 4501
Bse3DI GCAATG 7 cut(s) 355, 2123, 3008, 3064, 3978, 4293, 5218
Bse8I GATNNNNATC 1 cut(s) 4365
BseAI TCCGGA 1 cut(s) 1493
BseBI CCWGG 9 cut(s) 387, 586, 1200, 1467, 2315, 3356, 3383, 3705, 4494
BseCI ATCGAT 1 cut(s) 3748
BseJI GATNNNNATC 1 cut(s) 4365
BseMI GCAATG 7 cut(s) 355, 2123, 3008, 3064, 3978, 4293, 5218
BseNI ACTGG 7 cut(s) 520, 846, 987, 1866, 2851, 3601, 4501
BseRI GAGGAG 4 cut(s) 57, 1552, 2553, 3324
BseSI GKGCMC 4 cut(s) 400, 4420, 4534, 4795
BseYI CCCAGC 2 cut(s) 1071, 1999
BsgI GTGCAG 2 cut(s) 3809, 4724
Bsh1236I CGCG 3 cut(s) 77, 660, 3622
Bsh1285I CGRYCG 1 cut(s) 3802
BshFI GGCC 9 cut(s) 1059, 1089, 1185, 1787, 2872, 3260, 3950, 4159, 4480
BshNI GGYRCC 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 3801
BshVI ATCGAT 1 cut(s) 3748
BsiEI CGRYCG 1 cut(s) 3802
BsiHKAI GWGCWC 6 cut(s) 96, 477, 2041, 2586, 3439, 4920
BsiHKCI CYCGRG 4 cut(s) 708, 2756, 4413, 4433
BsiSI CCGG 8 cut(s) 1494, 2767, 2795, 3802, 4434, 5002, 5096, 5300
BslFI GGGAC 5 cut(s) 956, 2835, 2951, 4475, 5273
BsmAI GTCTC 6 cut(s) 1138, 1412, 1635, 2250, 3611, 4280
BsmFI GGGAC 5 cut(s) 956, 2835, 2951, 4475, 5273
BsmI GAATGC 5 cut(s) 255, 3115, 3876, 4804, 5467
BsnI GGCC 9 cut(s) 1059, 1089, 1185, 1787, 2872, 3260, 3950, 4159, 4480
BsoBI CYCGRG 4 cut(s) 708, 2756, 4413, 4433
Bsp13I TCCGGA 1 cut(s) 1493
Bsp1720I GCTNAGC 1 cut(s) 4777
Bsp19I CCATGG 3 cut(s) 2781, 2921, 4164
BspANI GGCC 9 cut(s) 1059, 1089, 1185, 1787, 2872, 3260, 3950, 4159, 4480
BspDI ATCGAT 1 cut(s) 3748
BspEI TCCGGA 1 cut(s) 1493
BspFNI CGCG 3 cut(s) 77, 660, 3622
BspHI TCATGA 1 cut(s) 5374
BspLI GGNNCC 9 cut(s) 397, 409, 1350, 1471, 2319, 2851, 3261, 4352, 4690
BspOI GCTAGC 1 cut(s) 5256
BspQI GCTCTTC 2 cut(s) 338, 1328
BspT107I GGYRCC 1 cut(s) 395
BspTI CTTAAG 1 cut(s) 2662
BsrDI GCAATG 7 cut(s) 355, 2123, 3008, 3064, 3978, 4293, 5218
BsrFI RCCGGY 1 cut(s) 3801
BsrI ACTGG 7 cut(s) 520, 846, 987, 1866, 2851, 3601, 4501
BssAI RCCGGY 1 cut(s) 3801
BssNAI GTATAC 1 cut(s) 5495
BssSI CACGAG 1 cut(s) 3432
BssT1I CCWWGG 4 cut(s) 2251, 2781, 2921, 4164
Bst1107I GTATAC 1 cut(s) 5495
Bst2BI CACGAG 1 cut(s) 3432
Bst2UI CCWGG 9 cut(s) 387, 586, 1200, 1467, 2315, 3356, 3383, 3705, 4494
Bst6I CTCTTC 6 cut(s) 120, 338, 1328, 2136, 2818, 3977
BstAFI CTTAAG 1 cut(s) 2662
BstAPI GCANNNNNTGC 2 cut(s) 299, 4799
BstBAI YACGTR 1 cut(s) 821
BstDSI CCRYGG 5 cut(s) 189, 658, 2781, 2921, 4164
BstENI CCTNNNNNAGG 2 cut(s) 210, 2133
BstFNI CGCG 3 cut(s) 77, 660, 3622
BstH2I RGCGCY 1 cut(s) 5241
BstHHI GCGC 2 cut(s) 2150, 5240
BstMAI GTCTC 6 cut(s) 1138, 1412, 1635, 2250, 3611, 4280
BstMCI CGRYCG 1 cut(s) 3802
BstNI CCWGG 9 cut(s) 387, 586, 1200, 1467, 2315, 3356, 3383, 3705, 4494
BstPAI GACNNNNGTC 1 cut(s) 1152
BstSFI CTRYAG 3 cut(s) 3493, 4227, 5448
BstSLI GKGCMC 4 cut(s) 400, 4420, 4534, 4795
BstUI CGCG 3 cut(s) 77, 660, 3622
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 5 cut(s) 704, 1348, 1690, 2317, 2834
BstXI CCANNNNNNTGG 2 cut(s) 592, 758
BstYI RGATCY 5 cut(s) 704, 1348, 1690, 2317, 2834
BstZ17I GTATAC 1 cut(s) 5495
Bsu15I ATCGAT 1 cut(s) 3748
BsuI GTATCC 1 cut(s) 3618
BsuRI GGCC 9 cut(s) 1059, 1089, 1185, 1787, 2872, 3260, 3950, 4159, 4480
BsuTUI ATCGAT 1 cut(s) 3748
BtgI CCRYGG 5 cut(s) 189, 658, 2781, 2921, 4164
BtgZI GCGATG 1 cut(s) 5235
BtrI CACGTC 1 cut(s) 764
BtsI GCAGTG 1 cut(s) 2782
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 5374
CfoI GCGC 2 cut(s) 2150, 5240
Cfr10I RCCGGY 1 cut(s) 3801
Cfr42I CCGCGG 1 cut(s) 661
Cfr9I CCCGGG 1 cut(s) 4433
ClaI ATCGAT 1 cut(s) 3748
CseI GACGC 3 cut(s) 29, 2726, 3002
CsiI ACCWGGT 1 cut(s) 1465
Csp6I GTAC 7 cut(s) 1100, 2112, 2370, 3224, 3542, 4378, 4620
CspAI ACCGGT 1 cut(s) 3801
CspCI CAANNNNNGTGG 4 cut(s) 2862, 2897, 4800, 4835
CviQI GTAC 7 cut(s) 1100, 2112, 2370, 3224, 3542, 4378, 4620
EaeI YGGCCR 3 cut(s) 1183, 2870, 4478
Eam1104I CTCTTC 6 cut(s) 120, 338, 1328, 2136, 2818, 3977
EarI CTCTTC 6 cut(s) 120, 338, 1328, 2136, 2818, 3977
Ecl136II GAGCTC 2 cut(s) 94, 3437
Eco130I CCWWGG 4 cut(s) 2251, 2781, 2921, 4164
Eco24I GRGCYC 4 cut(s) 96, 2541, 3439, 4434
Eco47I GGWCC 9 cut(s) 408, 683, 1154, 1202, 2248, 2769, 2849, 4573, 5081
Eco47III AGCGCT 1 cut(s) 5239
Eco53kI GAGCTC 2 cut(s) 94, 3437
Eco57I CTGAAG 8 cut(s) 195, 483, 782, 2514, 2632, 3713, 4520, 5008
Eco88I CYCGRG 4 cut(s) 708, 2756, 4413, 4433
EcoICRI GAGCTC 2 cut(s) 94, 3437
EcoNI CCTNNNNNAGG 2 cut(s) 210, 2133
EcoO109I RGGNCCY 1 cut(s) 3259
EcoRI GAATTC 1 cut(s) 1194
EcoRII CCWGG 9 cut(s) 385, 584, 1198, 1465, 2313, 3354, 3381, 3703, 4492
EcoT14I CCWWGG 4 cut(s) 2251, 2781, 2921, 4164
EcoT22I ATGCAT 5 cut(s) 1977, 3876, 3890, 3929, 4846
EcoT38I GRGCYC 4 cut(s) 96, 2541, 3439, 4434
ErhI CCWWGG 4 cut(s) 2251, 2781, 2921, 4164
FalI AAGNNNNNCTT 8 cut(s) 1028, 1060, 1375, 1407, 2656, 2688, 4452, 4484
FaqI GGGAC 5 cut(s) 956, 2835, 2951, 4475, 5273
FauI CCCGC 3 cut(s) 769, 826, 2860
FauNDI CATATG 2 cut(s) 3121, 3814
FbaI TGATCA 4 cut(s) 766, 823, 1177, 3346
FblI GTMKAC 3 cut(s) 332, 4230, 5494
FriOI GRGCYC 4 cut(s) 96, 2541, 3439, 4434
GlaI GCGC 2 cut(s) 2149, 5239
GsaI CCCAGC 2 cut(s) 1075, 2003
GsuI CTGGAG 3 cut(s) 537, 1715, 3377
HaeII RGCGCY 1 cut(s) 5241
HaeIII GGCC 9 cut(s) 1059, 1089, 1185, 1787, 2872, 3260, 3950, 4159, 4480
HapII CCGG 8 cut(s) 1494, 2767, 2795, 3802, 4434, 5002, 5096, 5300
HgaI GACGC 3 cut(s) 29, 2726, 3002
HhaI GCGC 2 cut(s) 2150, 5240
Hin6I GCGC 2 cut(s) 2148, 5238
HinP1I GCGC 2 cut(s) 2148, 5238
HincII GTYRAC 4 cut(s) 2032, 2732, 4645, 4978
HindII GTYRAC 4 cut(s) 2032, 2732, 4645, 4978
HindIII AAGCTT 3 cut(s) 1550, 1752, 3330
HpaI GTTAAC 3 cut(s) 2032, 4645, 4978
HpaII CCGG 8 cut(s) 1494, 2767, 2795, 3802, 4434, 5002, 5096, 5300
HphI GGTGA 6 cut(s) 1368, 1381, 3350, 4190, 5065, 5120
Hpy99I CGWCG 3 cut(s) 149, 161, 3018
HpyCH4IV ACGT 4 cut(s) 763, 820, 4521, 4710
HpySE526I ACGT 4 cut(s) 763, 820, 4521, 4710
HspAI GCGC 2 cut(s) 2148, 5238
Kpn2I TCCGGA 1 cut(s) 1493
Ksp22I TGATCA 4 cut(s) 766, 823, 1177, 3346
KspAI GTTAAC 3 cut(s) 2032, 4645, 4978
KspI CCGCGG 1 cut(s) 661
LguI GCTCTTC 2 cut(s) 338, 1328
LmnI GCTCC 9 cut(s) 52, 91, 99, 184, 662, 974, 3585, 3853, 4915
MabI ACCWGGT 1 cut(s) 1465
MaeII ACGT 4 cut(s) 763, 820, 4521, 4710
MflI RGATCY 5 cut(s) 704, 1348, 1690, 2317, 2834
MlsI TGGCCA 3 cut(s) 1185, 2872, 4480
MluNI TGGCCA 3 cut(s) 1185, 2872, 4480
MlyI GAGTC 4 cut(s) 241, 3963, 4226, 5007
MmeI TCCRAC 8 cut(s) 168, 435, 1229, 1893, 2765, 2812, 2980, 5187
Mox20I TGGCCA 3 cut(s) 1185, 2872, 4480
Mph1103I ATGCAT 5 cut(s) 1977, 3876, 3890, 3929, 4846
MroI TCCGGA 1 cut(s) 1493
MroXI GAANNNNTTC 2 cut(s) 2229, 3129
MscI TGGCCA 3 cut(s) 1185, 2872, 4480
Msp20I TGGCCA 3 cut(s) 1185, 2872, 4480
MspA1I CMGCKG 5 cut(s) 660, 1142, 2855, 4578, 5205
MspCI CTTAAG 1 cut(s) 2662
MspI CCGG 8 cut(s) 1494, 2767, 2795, 3802, 4434, 5002, 5096, 5300
Mva1269I GAATGC 5 cut(s) 255, 3115, 3876, 4804, 5467
MvaI CCWGG 9 cut(s) 387, 586, 1200, 1467, 2315, 3356, 3383, 3705, 4494
MvnI CGCG 3 cut(s) 77, 660, 3622
NciI CCSGG 2 cut(s) 4434, 4435
NcoI CCATGG 3 cut(s) 2781, 2921, 4164
NdeI CATATG 2 cut(s) 3121, 3814
NheI GCTAGC 1 cut(s) 5252
NlaIV GGNNCC 9 cut(s) 397, 409, 1350, 1471, 2319, 2851, 3261, 4352, 4690
NmuCI GTSAC 8 cut(s) 449, 511, 1369, 1387, 1531, 3248, 3338, 3429
NsiI ATGCAT 5 cut(s) 1977, 3876, 3890, 3929, 4846
PaeI GCATGC 2 cut(s) 3878, 3888
PaeR7I CTCGAG 1 cut(s) 708
PagI TCATGA 1 cut(s) 5374
PciI ACATGT 5 cut(s) 935, 1249, 2929, 3525, 4639
PciSI GCTCTTC 2 cut(s) 338, 1328
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 5 cut(s) 255, 3115, 3876, 4804, 5467
PdmI GAANNNNTTC 2 cut(s) 2229, 3129
PflMI CCANNNNNTGG 1 cut(s) 3181
PinAI ACCGGT 1 cut(s) 3801
PleI GAGTC 4 cut(s) 241, 3963, 4226, 5006
PpsI GAGTC 4 cut(s) 241, 3963, 4226, 5006
Ppu21I YACGTR 1 cut(s) 821
PscI ACATGT 5 cut(s) 935, 1249, 2929, 3525, 4639
PshAI GACNNNNGTC 1 cut(s) 1152
PshBI ATTAAT 1 cut(s) 3371
PsiI TTATAA 1 cut(s) 428
Psp124BI GAGCTC 2 cut(s) 96, 3439
Psp6I CCWGG 9 cut(s) 385, 584, 1198, 1465, 2313, 3354, 3381, 3703, 4492
PspFI CCCAGC 2 cut(s) 1071, 1999
PspGI CCWGG 9 cut(s) 385, 584, 1198, 1465, 2313, 3354, 3381, 3703, 4492
PspN4I GGNNCC 9 cut(s) 397, 409, 1350, 1471, 2319, 2851, 3261, 4352, 4690
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 5 cut(s) 704, 1348, 1690, 2317, 2834
RsaI GTAC 7 cut(s) 1101, 2113, 2371, 3225, 3543, 4379, 4621
RsaNI GTAC 7 cut(s) 1100, 2112, 2370, 3224, 3542, 4378, 4620
SacI GAGCTC 2 cut(s) 96, 3439
SacII CCGCGG 1 cut(s) 661
SapI GCTCTTC 2 cut(s) 338, 1328
SchI GAGTC 4 cut(s) 241, 3963, 4226, 5007
SexAI ACCWGGT 1 cut(s) 1465
SfcI CTRYAG 3 cut(s) 3493, 4227, 5448
Sfr274I CTCGAG 1 cut(s) 708
Sfr303I CCGCGG 1 cut(s) 661
SgrBI CCGCGG 1 cut(s) 661
SinI GGWCC 9 cut(s) 408, 683, 1154, 1202, 2248, 2769, 2849, 4573, 5081
SlaI CTCGAG 1 cut(s) 708
SmaI CCCGGG 1 cut(s) 4435
SphI GCATGC 2 cut(s) 3878, 3888
SspI AATATT 2 cut(s) 1309, 5341
SstI GAGCTC 2 cut(s) 96, 3439
StyI CCWWGG 4 cut(s) 2251, 2781, 2921, 4164
TaiI ACGT 4 cut(s) 766, 823, 4524, 4713
TaqI TCGA 8 cut(s) 709, 1604, 2331, 2541, 2893, 3016, 3748, 5258
TatI WGTACW 1 cut(s) 2111
TauI GCSGC 6 cut(s) 32, 61, 64, 811, 868, 5208
TseFI GTSAC 8 cut(s) 449, 511, 1369, 1387, 1531, 3248, 3338, 3429
Tsp45I GTSAC 8 cut(s) 449, 511, 1369, 1387, 1531, 3248, 3338, 3429
TspGWI ACGGA 3 cut(s) 2468, 2578, 3321
TspMI CCCGGG 1 cut(s) 4433
Van91I CCANNNNNTGG 1 cut(s) 3181
Vha464I CTTAAG 1 cut(s) 2662
VpaK11BI GGWCC 9 cut(s) 408, 683, 1154, 1202, 2248, 2769, 2849, 4573, 5081
VspI ATTAAT 1 cut(s) 3371
XagI CCTNNNNNAGG 2 cut(s) 210, 2133
XapI RAATTY 8 cut(s) 667, 739, 1194, 3193, 3988, 4148, 4969, 5056
XbaI TCTAGA 1 cut(s) 1459
XcmI CCANNNNNNNNNTGG 4 cut(s) 45, 968, 1904, 2779
XhoI CTCGAG 1 cut(s) 708
XmaI CCCGGG 1 cut(s) 4433
XmiI GTMKAC 3 cut(s) 332, 4230, 5494
XmnI GAANNNNTTC 2 cut(s) 2229, 3129
Zsp2I ATGCAT 5 cut(s) 1977, 3876, 3890, 3929, 4846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.