Rh1BG297600

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003732
Physical Location & Seq
Reverse (-)
43262120 .. 43265963
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG297600.1

Sequence Viewer

Length: 2658 bp
ATGAAGGTTATAGACCCAAACAATGTGATGGAACATCAGGACAGAAGTCAACAGAGTGGAGCTCGTGATACTAATATTGAAGAAGGTGCTTGTATAAACTCTGGTAAAGTGCAGTTTAGCAGTACCATGGTAGACACAACGAAAAAGGCTCTGGTGAAATTATGTGATAGAGAATATGGCTCTTATACCACTGGTCCTGCTGTTGATCCCTTTTGGCCACTTTGCATGTATGAGCTACGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGTTAAGGACTACTCTACCACCGATATGTCTCCACATCAGCATGATAATTCTGAAATTGCTGGTTGTCAGGTTGGACAAACGTTTTGCAAAGAAAAGTGTGATGGTTCAGCAAAAGTTCCCTGGCGTCACAATTTTACGACTTTACCAACTTACCTTGTTGGCTTAAGTACTCTAAAAGCTGATCTGCATTCATATGATTCTGTTCTAGCACGGAGAAATGGTGAATGCTGGAAGAAGTGTTTCAGCCTTTTCTTAGCATTGTCAAAGTCGTTTCAAAAAGATTTTCCTACAGATGGGCCAGTCTCGCATGGAAATGACGGCCGCATCGAGGTCCCTGTGAGTTGGAACAGACAGTCATCATATTTCCAGAGTAGAAATAGCGGAGTGAATCAACCGGATCAAGCTTTGGCTGACAATGAGCAATACCTGGAAAAGGCTCTTTTAATTTTCAGTCAAGAGGTCAATACACTTGAGGGTATGAAAAAGGCTCTTCCTGTATTGTCACGTGCTCTTGAGGCTGATCCAACATCCGTAGTTCTCTGGGTCTTTTATCTGCTTATTTACTATAGCAATATGAAGTCAGTAGGGAAGGATGACATGTTCTCTTGTGCGGTCAACTACAATGATCAATCTTATGAACTTTGGATTATGTTCATCAACAGTCGGGTGCGGCTAAGTGACCGATTGGTTACCTACGATCTTGCCTTCTCAGCACTGTGCCCCCGCCATGCTTCTTCTGCCAAAGATAAAGTGCATGCTAGTGCTTGTATCTTAGACTTAGTTTTGCAAATGGTGGATTGTCTATGCATGTCTGGGAATGTTGAGAGGGCCATTCAGAAAATTTGTGGACTCTTCTCTGCTGCCACAAATATTTATGACCCCGATTCTCCATTGCTTACTGATATGCCCAAATGCCTAACAAGTCATGACAAATGTATTTTGGGGGTATGTTGTGTTTACTTGGTTATCTATAGGAAACTTCCTGATGCTGTAGTACTGCAGTTTGAATGTCAGAAAGAACTGTTTGCAATAGAATGGCCTTCTATTGAATTAACAGATAATGAAAAGCAGAGGGCTGTCAAACTGATGGAAGCAGTAGAAGATTCTGTATGTCAATCGCTGGATAAAAGTGATTTTAATCTCAGTTTGGCACATTTTTTTGCTCTGAGCCACTTAAGGTGCATGGCAGCTATTGACAGCTTAGAAAGGTGTAGTAATCTTCTGGGTAAATATCTTAAAATGTTCCCGTCCTGCCTAGAGCTTGTTCTAATATCGGCAAGGGCCCAAAAACATGCTCCTGGTGATTCGCTTTTTGACGGGTTTGAGGAAGCCCTAAATAATTGGCCAAAAGAAGTCCCCGGAATTCAATGCATCTGGAATCAGTATGTTGTATATGCCTTTCAGAAAGGACAATTTGATTTTGGTAAAGAACTTATAGGCCGTTGGTTTCATTCTTTTTGGCAAGTTCATTGTATTCGAAATGGTACATTAGATGACATGGAGTGTGATAACTCAGATGGCTCACTAGGATTGGCTTCGGATTCAGTTCTGCAGACACTTAATACTGATTCTAAGCAGATGGACGTAATGTTTGGATATCTTAATCTCTCGCTGTATAAGTTAATCCAAAATGATCAGATTGAAGCTCGCTTAGCCCTCGAGAGGGCATTGAAGGCTGCTGTTCCAGAATATTCAAAGCATTGCATGAGGGAGCATGCATTATTTATGCTAAGTGAGGAATCAGGATTTAAGGAGAGTGGTTGTCCTAGTGGCATGGAGAAGATTTTGAAACGTTACATAGGTGATGCCGAAGTTTTCCCTTCATCTGAGCCATTATCTAGGCAGTTTATTGCTGACATCAAGAAGCCAAGAGTACGACAGCTGGTTAGTAGCGAATTCAGTCCATTCTCATCTGATTTTGCTCTTGTAAATTCAGTTCTTGAAGTGTTGTATGGACCATCTCTTTTACCGAAAAAGACTGGTGAGACAAAATGTCTGGTGGATTTTGTTGAAGCCATCTTGGATATAACTCCATCCAACTATCAGTTAGCTATTTCTGTCTGTAAGCTGTTAATTACTGGCAACAATGCAACTGATATTACTTCAGTCAGTGTTTTGTTCTGGGCTAGCTCAAACTTGGTCAGTGCAATCTTTCGTGCTGTCCCAATTCCGCCAGAGTATGTATGGGTAGAAGCTGCAGACATATTGGGCAATATGGTGAATGTTGAGGTTATTTCTGAGAGGTTTTATAAGAGAGCTTTATCTGTATATCCTTTCTCTGTCAAGTTGTGGAAATCCTATTACATGCTTTCTATGATGACTACAGGAAATATGAACACTGTTGTGGAAACAGCAAAGGAAAAAGGTATAGAACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

885

Amino Acids

99.63

Weight (kDa)

5.41

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 74 - 94 6.9e-10 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2526
AccI GTMKAC 1 cut(s) 132
AciI CCGC 6 cut(s) 598, 657, 887, 946, 1000, 2447
AclI AACGTT 2 cut(s) 356, 2068
AclWI GGATC 3 cut(s) 200, 681, 791
AcoI YGGCCR 3 cut(s) 215, 595, 1619
AcsI RAATTY 4 cut(s) 1116, 1638, 2171, 2206
AcuI CTGAAG 1 cut(s) 2364
AcvI CACGTG 1 cut(s) 782
AcyI GRCGYC 1 cut(s) 400
AfaI GTAC 5 cut(s) 124, 445, 1272, 1762, 2151
AfiI CCNNNNNNNGG 5 cut(s) 569, 604, 709, 1938, 1939
AflII CTTAAG 2 cut(s) 439, 1450
AflIII ACRYGT 1 cut(s) 873
AhdI GACNNNNNGTC 1 cut(s) 2268
AjnI CCWGG 3 cut(s) 395, 702, 1573
AleI CACNNNNGTG 1 cut(s) 2618
AloI GAACNNNNNNTCC 2 cut(s) 860, 892
Alw21I GWGCWC 2 cut(s) 64, 787
Alw26I GTCTC 3 cut(s) 309, 583, 2255
AlwI GGATC 3 cut(s) 200, 681, 791
Ama87I CYCGRG 1 cut(s) 1934
AoxI GGCC 8 cut(s) 215, 572, 595, 1104, 1313, 1557, 1619, 1714
ApaI GGGCCC 1 cut(s) 1561
ApeKI GCWGC 5 cut(s) 271, 1136, 1463, 1952, 2471
ApoI RAATTY 4 cut(s) 1116, 1638, 2171, 2206
ArsI GACNNNNNNTTYG 4 cut(s) 342, 374, 1850, 1882
Asp700I GAANNNNTTC 1 cut(s) 515
AspS9I GGNCC 7 cut(s) 194, 572, 607, 1104, 1557, 1558, 2231
AsuC2I CCSGG 1 cut(s) 1635
AsuHPI GGTGA 6 cut(s) 166, 509, 1589, 2090, 2270, 2506
AsuII TTCGAA 1 cut(s) 1753
AsuNHI GCTAGC 1 cut(s) 2402
AvaI CYCGRG 1 cut(s) 1934
AvaII GGWCC 3 cut(s) 194, 607, 2231
BaeGI GKGCMC 2 cut(s) 998, 1561
BalI TGGCCA 2 cut(s) 217, 1621
BanII GRGCYC 2 cut(s) 64, 1561
BauI CACGAG 1 cut(s) 63
BbrPI CACGTG 1 cut(s) 782
Bbv12I GWGCWC 2 cut(s) 64, 787
BbvI GCAGC 5 cut(s) 283, 1123, 1475, 1939, 2458
BccI CCATC 9 cut(s) 22, 371, 563, 1357, 1787, 1849, 2242, 2300, 2317
BceAI ACGGC 2 cut(s) 610, 1701
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 3 cut(s) 397, 704, 1575
BclI TGATCA 2 cut(s) 901, 1909
BcnI CCSGG 1 cut(s) 1635
BcoDI GTCTC 3 cut(s) 309, 583, 2255
BfaI CTAG 7 cut(s) 482, 1035, 1532, 1802, 2043, 2115, 2403
BfmI CTRYAG 8 cut(s) 564, 841, 1246, 1266, 1274, 1826, 2472, 2598
BfrI CTTAAG 2 cut(s) 439, 1450
BisI GCNGC 7 cut(s) 272, 598, 947, 1137, 1464, 1953, 2472
BlpI GCTNAGC 1 cut(s) 1927
BlsI GCNGC 7 cut(s) 273, 599, 948, 1138, 1465, 1954, 2473
BmcAI AGTACT 2 cut(s) 445, 1272
Bme1390I CCNGG 4 cut(s) 397, 704, 1575, 1635
Bme18I GGWCC 3 cut(s) 194, 607, 2231
BmeRI GACNNNNNGTC 1 cut(s) 2268
BmeT110I CYCGRG 1 cut(s) 1934
BmgT120I GGNCC 7 cut(s) 194, 572, 607, 1104, 1557, 1558, 2231
BmiI GGNNCC 2 cut(s) 609, 1559
BmrFI CCNGG 4 cut(s) 397, 704, 1575, 1635
BmsI GCATC 4 cut(s) 609, 1252, 1656, 2071
BmtI GCTAGC 1 cut(s) 2406
BoxI GACNNNNGTC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 46, 78
Bpu1102I GCTNAGC 1 cut(s) 1927
Bpu14I TTCGAA 1 cut(s) 1753
BpuEI CTTGAG 2 cut(s) 767, 809
BpuMI CCSGG 1 cut(s) 1635
BsaAI YACGTR 1 cut(s) 782
BsaBI GATNNNNATC 1 cut(s) 1413
BsaHI GRCGYC 1 cut(s) 400
BsaJI CCNNGG 4 cut(s) 126, 266, 395, 1633
BsaWI WCCGGW 1 cut(s) 670
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 5 cut(s) 569, 604, 709, 1938, 1939
Bse1I ACTGG 4 cut(s) 196, 575, 2260, 2359
Bse3DI GCAATG 2 cut(s) 1166, 1975
Bse8I GATNNNNATC 1 cut(s) 1413
BseBI CCWGG 3 cut(s) 397, 704, 1575
BseDI CCNNGG 4 cut(s) 126, 266, 395, 1633
BseGI GGATG 3 cut(s) 803, 874, 2309
BseJI GATNNNNATC 1 cut(s) 1413
BseLI CCNNNNNNNGG 5 cut(s) 569, 604, 709, 1938, 1939
BseMI GCAATG 2 cut(s) 1166, 1975
BseMII CTCAG 6 cut(s) 999, 1432, 1433, 1803, 2094, 2505
BseNI ACTGG 4 cut(s) 196, 575, 2260, 2359
BseSI GKGCMC 2 cut(s) 998, 1561
BseX3I CGGCCG 1 cut(s) 595
BseXI GCAGC 5 cut(s) 283, 1123, 1475, 1939, 2458
BsgI GTGCAG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 8 cut(s) 217, 574, 597, 1106, 1315, 1559, 1621, 1716
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 2 cut(s) 64, 787
BsiHKCI CYCGRG 1 cut(s) 1934
BsiSI CCGG 2 cut(s) 671, 1635
BslFI GGGAC 3 cut(s) 593, 1616, 2423
BslI CCNNNNNNNGG 5 cut(s) 569, 604, 709, 1938, 1939
BsmAI GTCTC 3 cut(s) 309, 583, 2255
BsmFI GGGAC 3 cut(s) 593, 1616, 2423
BsmI GAATGC 2 cut(s) 463, 506
BsnI GGCC 8 cut(s) 217, 574, 597, 1106, 1315, 1559, 1621, 1716
BsoBI CYCGRG 1 cut(s) 1934
Bsp119I TTCGAA 1 cut(s) 1753
Bsp120I GGGCCC 1 cut(s) 1557
Bsp1286I GDGCHC 4 cut(s) 64, 787, 998, 1561
Bsp143I GATC 7 cut(s) 205, 457, 673, 796, 901, 973, 1909
Bsp1720I GCTNAGC 1 cut(s) 1927
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 6 cut(s) 598, 657, 887, 946, 1000, 2447
BspANI GGCC 8 cut(s) 217, 574, 597, 1106, 1315, 1559, 1621, 1716
BspCNI CTCAG 6 cut(s) 998, 1431, 1434, 1802, 2095, 2506
BspHI TCATGA 1 cut(s) 1201
BspLI GGNNCC 2 cut(s) 609, 1559
BspMAI CTGCAG 3 cut(s) 1278, 1830, 2476
BspOI GCTAGC 1 cut(s) 2406
BspPI GGATC 3 cut(s) 200, 681, 791
BspQI GCTCTTC 1 cut(s) 771
BspT104I TTCGAA 1 cut(s) 1753
BspTI CTTAAG 2 cut(s) 439, 1450
BsrDI GCAATG 2 cut(s) 1166, 1975
BsrI ACTGG 4 cut(s) 196, 575, 2260, 2359
BssECI CCNNGG 4 cut(s) 126, 266, 395, 1633
BssMI GATC 7 cut(s) 205, 457, 673, 796, 901, 973, 1909
BssNI GRCGYC 1 cut(s) 400
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 126, 266
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 3 cut(s) 397, 704, 1575
Bst4CI ACNGT 5 cut(s) 630, 938, 993, 1299, 2617
Bst6I CTCTTC 2 cut(s) 771, 1133
BstACI GRCGYC 1 cut(s) 400
BstAFI CTTAAG 2 cut(s) 439, 1450
BstBAI YACGTR 1 cut(s) 782
BstBI TTCGAA 1 cut(s) 1753
BstC8I GCNNGC 4 cut(s) 1032, 1924, 1992, 2404
BstDSI CCRYGG 1 cut(s) 126
BstEII GGTNACC 1 cut(s) 964
BstENI CCTNNNNNAGG 1 cut(s) 707
BstF5I GGATG 3 cut(s) 803, 874, 2309
BstKTI GATC 7 cut(s) 208, 460, 676, 799, 904, 976, 1912
BstMAI GTCTC 3 cut(s) 309, 583, 2255
BstMBI GATC 7 cut(s) 205, 457, 673, 796, 901, 973, 1909
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 6 cut(s) 580, 791, 986, 1013, 1928, 1949
BstNI CCWGG 3 cut(s) 397, 704, 1575
BstNSI RCATGY 8 cut(s) 229, 278, 877, 1034, 1087, 1571, 1994, 2584
BstPAI GACNNNNGTC 1 cut(s) 45
BstPI GGTNACC 1 cut(s) 964
BstSCI CCNGG 4 cut(s) 395, 702, 1573, 1633
BstSFI CTRYAG 8 cut(s) 564, 841, 1246, 1266, 1274, 1826, 2472, 2598
BstSLI GKGCMC 2 cut(s) 998, 1561
BstV1I GCAGC 5 cut(s) 283, 1123, 1475, 1939, 2458
BstZI CGGCCG 1 cut(s) 595
BsuRI GGCC 8 cut(s) 217, 574, 597, 1106, 1315, 1559, 1621, 1716
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 3 cut(s) 803, 874, 2309
BtsIMutI CAGTG 5 cut(s) 189, 989, 2392, 2425, 2613
Cac8I GCNNGC 4 cut(s) 1032, 1924, 1992, 2404
CciI TCATGA 1 cut(s) 1201
Cfr13I GGNCC 7 cut(s) 194, 572, 607, 1104, 1557, 1558, 2231
CseI GACGC 1 cut(s) 389
Csp6I GTAC 5 cut(s) 123, 444, 1271, 1761, 2150
CviQI GTAC 5 cut(s) 123, 444, 1271, 1761, 2150
DpnI GATC 7 cut(s) 207, 459, 675, 798, 903, 975, 1911
DpnII GATC 7 cut(s) 205, 457, 673, 796, 901, 973, 1909
DriI GACNNNNNGTC 1 cut(s) 2268
EaeI YGGCCR 3 cut(s) 215, 595, 1619
EagI CGGCCG 1 cut(s) 595
Eam1104I CTCTTC 2 cut(s) 771, 1133
Eam1105I GACNNNNNGTC 1 cut(s) 2268
EarI CTCTTC 2 cut(s) 771, 1133
EciI GGCGGA 1 cut(s) 2436
Ecl136II GAGCTC 1 cut(s) 62
EclXI CGGCCG 1 cut(s) 595
Eco130I CCWWGG 2 cut(s) 126, 266
Eco24I GRGCYC 2 cut(s) 64, 1561
Eco32I GATATC 1 cut(s) 1874
Eco47I GGWCC 3 cut(s) 194, 607, 2231
Eco52I CGGCCG 1 cut(s) 595
Eco53kI GAGCTC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 2364
Eco72I CACGTG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 1934
Eco91I GGTNACC 1 cut(s) 964
EcoICRI GAGCTC 1 cut(s) 62
EcoNI CCTNNNNNAGG 1 cut(s) 707
EcoO109I RGGNCCY 2 cut(s) 607, 1557
EcoO65I GGTNACC 1 cut(s) 964
EcoRI GAATTC 2 cut(s) 1638, 2171
EcoRII CCWGG 3 cut(s) 395, 702, 1573
EcoRV GATATC 1 cut(s) 1874
EcoT14I CCWWGG 2 cut(s) 126, 266
EcoT22I ATGCAT 3 cut(s) 1085, 1649, 1996
EcoT38I GRGCYC 2 cut(s) 64, 1561
ErhI CCWWGG 2 cut(s) 126, 266
FaqI GGGAC 3 cut(s) 593, 1616, 2423
FauI CCCGC 1 cut(s) 1007
FauNDI CATATG 1 cut(s) 469
FbaI TGATCA 2 cut(s) 901, 1909
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 7 cut(s) 272, 598, 947, 1137, 1464, 1953, 2472
FokI GGATG 3 cut(s) 790, 881, 2296
FriOI GRGCYC 2 cut(s) 64, 1561
Fsp4HI GCNGC 7 cut(s) 272, 598, 947, 1137, 1464, 1953, 2472
FspBI CTAG 7 cut(s) 482, 1035, 1532, 1802, 2043, 2115, 2403
GluI GCNGC 7 cut(s) 272, 598, 947, 1137, 1464, 1953, 2472
HaeIII GGCC 8 cut(s) 217, 574, 597, 1106, 1315, 1559, 1621, 1716
HapII CCGG 2 cut(s) 671, 1635
HgaI GACGC 1 cut(s) 389
Hin1I GRCGYC 1 cut(s) 400
HincII GTYRAC 2 cut(s) 50, 892
HindII GTYRAC 2 cut(s) 50, 892
HindIII AAGCTT 1 cut(s) 678
HpaII CCGG 2 cut(s) 671, 1635
HphI GGTGA 6 cut(s) 166, 509, 1589, 2090, 2270, 2506
Hpy166II GTNNAC 5 cut(s) 50, 133, 892, 1124, 1234
Hpy8I GTNNAC 5 cut(s) 50, 133, 892, 1124, 1234
HpyAV CCTTC 6 cut(s) 77, 859, 991, 1326, 1942, 2106
HpyCH4III ACNGT 5 cut(s) 630, 938, 993, 1299, 2617
HpyCH4IV ACGT 4 cut(s) 356, 781, 1860, 2068
HpyF10VI GCNNNNNNNGC 6 cut(s) 580, 791, 986, 1013, 1928, 1949
HpySE526I ACGT 4 cut(s) 356, 781, 1860, 2068
Hsp92I GRCGYC 1 cut(s) 400
Ksp22I TGATCA 2 cut(s) 901, 1909
Kzo9I GATC 7 cut(s) 205, 457, 673, 796, 901, 973, 1909
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 3 cut(s) 59, 1576, 1987
Lsp1109I GCAGC 5 cut(s) 283, 1123, 1475, 1939, 2458
LweI GCATC 4 cut(s) 609, 1252, 1656, 2071
MaeI CTAG 7 cut(s) 482, 1035, 1532, 1802, 2043, 2115, 2403
MaeII ACGT 4 cut(s) 356, 781, 1860, 2068
MaeIII GTNAC 5 cut(s) 401, 777, 953, 964, 2069
MalI GATC 7 cut(s) 207, 459, 675, 798, 903, 975, 1911
MboI GATC 7 cut(s) 205, 457, 673, 796, 901, 973, 1909
MboII GAAGA 8 cut(s) 92, 520, 758, 1002, 1120, 1388, 1487, 2068
MhlI GDGCHC 4 cut(s) 64, 787, 998, 1561
MlsI TGGCCA 2 cut(s) 217, 1621
MluNI TGGCCA 2 cut(s) 217, 1621
MlyI GAGTC 1 cut(s) 1119
MmeI TCCRAC 4 cut(s) 328, 599, 824, 2337
Mox20I TGGCCA 2 cut(s) 217, 1621
Mph1103I ATGCAT 3 cut(s) 1085, 1649, 1996
MroXI GAANNNNTTC 1 cut(s) 515
MscI TGGCCA 2 cut(s) 217, 1621
MslI CAYNNNNRTG 6 cut(s) 299, 315, 468, 588, 1035, 2618
Msp20I TGGCCA 2 cut(s) 217, 1621
MspA1I CMGCKG 1 cut(s) 2158
MspCI CTTAAG 2 cut(s) 439, 1450
MspI CCGG 2 cut(s) 671, 1635
MspR9I CCNGG 4 cut(s) 397, 704, 1575, 1635
Mva1269I GAATGC 2 cut(s) 463, 506
MvaI CCWGG 3 cut(s) 397, 704, 1575
MwoI GCNNNNNNNGC 6 cut(s) 580, 791, 986, 1013, 1928, 1949
NciI CCSGG 1 cut(s) 1635
NcoI CCATGG 1 cut(s) 126
NdeI CATATG 1 cut(s) 469
NdeII GATC 7 cut(s) 205, 457, 673, 796, 901, 973, 1909
NheI GCTAGC 1 cut(s) 2402
NlaIV GGNNCC 2 cut(s) 609, 1559
NmuCI GTSAC 3 cut(s) 401, 777, 953
NsiI ATGCAT 3 cut(s) 1085, 1649, 1996
NspI RCATGY 8 cut(s) 229, 278, 877, 1034, 1087, 1571, 1994, 2584
NspV TTCGAA 1 cut(s) 1753
OliI CACNNNNGTG 1 cut(s) 2618
PaeI GCATGC 2 cut(s) 1034, 1994
PaeR7I CTCGAG 1 cut(s) 1934
PagI TCATGA 1 cut(s) 1201
PciI ACATGT 1 cut(s) 873
PciSI GCTCTTC 1 cut(s) 771
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PctI GAATGC 2 cut(s) 463, 506
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 9 cut(s) 473, 664, 1160, 1379, 1580, 1654, 1817, 1844, 2015
PkrI GCNGC 7 cut(s) 273, 599, 948, 1138, 1465, 1954, 2473
PleI GAGTC 1 cut(s) 1119
PmaCI CACGTG 1 cut(s) 782
PmlI CACGTG 1 cut(s) 782
PpsI GAGTC 1 cut(s) 1119
Ppu21I YACGTR 1 cut(s) 782
PpuMI RGGWCCY 1 cut(s) 607
PscI ACATGT 1 cut(s) 873
PshAI GACNNNNGTC 1 cut(s) 45
PsiI TTATAA 1 cut(s) 2526
Psp124BI GAGCTC 1 cut(s) 64
Psp1406I AACGTT 2 cut(s) 356, 2068
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 3 cut(s) 395, 702, 1573
PspCI CACGTG 1 cut(s) 782
PspEI GGTNACC 1 cut(s) 964
PspGI CCWGG 3 cut(s) 395, 702, 1573
PspN4I GGNNCC 2 cut(s) 609, 1559
PspOMI GGGCCC 1 cut(s) 1557
PspPI GGNCC 7 cut(s) 194, 572, 607, 1104, 1557, 1558, 2231
PspPPI RGGWCCY 1 cut(s) 607
PsrI GAACNNNNNNTAC 2 cut(s) 2196, 2228
PstI CTGCAG 3 cut(s) 1278, 1830, 2476
PvuII CAGCTG 1 cut(s) 2158
RsaI GTAC 5 cut(s) 124, 445, 1272, 1762, 2151
RsaNI GTAC 5 cut(s) 123, 444, 1271, 1761, 2150
RseI CAYNNNNRTG 6 cut(s) 299, 315, 468, 588, 1035, 2618
SacI GAGCTC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 771
SatI GCNGC 7 cut(s) 272, 598, 947, 1137, 1464, 1953, 2472
Sau3AI GATC 7 cut(s) 205, 457, 673, 796, 901, 973, 1909
Sau96I GGNCC 7 cut(s) 194, 572, 607, 1104, 1557, 1558, 2231
ScaI AGTACT 2 cut(s) 445, 1272
SchI GAGTC 1 cut(s) 1119
ScrFI CCNGG 4 cut(s) 397, 704, 1575, 1635
SduI GDGCHC 4 cut(s) 64, 787, 998, 1561
SfaNI GCATC 4 cut(s) 609, 1252, 1656, 2071
SfcI CTRYAG 8 cut(s) 564, 841, 1246, 1266, 1274, 1826, 2472, 2598
Sfr274I CTCGAG 1 cut(s) 1934
SfuI TTCGAA 1 cut(s) 1753
SinI GGWCC 3 cut(s) 194, 607, 2231
SlaI CTCGAG 1 cut(s) 1934
SmiMI CAYNNNNRTG 6 cut(s) 299, 315, 468, 588, 1035, 2618
SmlI CTYRAG 5 cut(s) 439, 746, 788, 1450, 1934
SmoI CTYRAG 5 cut(s) 439, 746, 788, 1450, 1934
SphI GCATGC 2 cut(s) 1034, 1994
SsiI CCGC 6 cut(s) 598, 657, 887, 946, 1000, 2447
SspI AATATT 3 cut(s) 76, 1147, 1967
SspMI CTAG 7 cut(s) 482, 1035, 1532, 1802, 2043, 2115, 2403
SstI GAGCTC 1 cut(s) 64
StyD4I CCNGG 4 cut(s) 395, 702, 1573, 1633
StyI CCWWGG 2 cut(s) 126, 266
TaaI ACNGT 5 cut(s) 630, 938, 993, 1299, 2617
TaiI ACGT 4 cut(s) 359, 784, 1863, 2071
TaqI TCGA 3 cut(s) 603, 1753, 1935
TaqII GACCGA 1 cut(s) 972
TatI WGTACW 2 cut(s) 443, 1270
TauI GCSGC 2 cut(s) 600, 949
TfiI GAWTC 9 cut(s) 473, 664, 1160, 1379, 1580, 1654, 1817, 1844, 2015
TscAI CASTG 5 cut(s) 196, 996, 2392, 2425, 2620
TseFI GTSAC 3 cut(s) 401, 777, 953
TseI GCWGC 5 cut(s) 271, 1136, 1463, 1952, 2471
Tsp45I GTSAC 3 cut(s) 401, 777, 953
TspGWI ACGGA 2 cut(s) 502, 796
TspRI CASTG 5 cut(s) 196, 996, 2392, 2425, 2620
Vha464I CTTAAG 2 cut(s) 439, 1450
VpaK11BI GGWCC 3 cut(s) 194, 607, 2231
XagI CCTNNNNNAGG 1 cut(s) 707
XapI RAATTY 4 cut(s) 1116, 1638, 2171, 2206
XceI RCATGY 8 cut(s) 229, 278, 877, 1034, 1087, 1571, 1994, 2584
XcmI CCANNNNNNNNNTGG 1 cut(s) 2457
XhoI CTCGAG 1 cut(s) 1934
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 7 cut(s) 482, 1035, 1532, 1802, 2043, 2115, 2403
ZrmI AGTACT 2 cut(s) 445, 1272
Zsp2I ATGCAT 3 cut(s) 1085, 1649, 1996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.