Rh1AG336200

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003732
Physical Location & Seq
Reverse (-)
57024152 .. 57033631
9480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG336200.1

Sequence Viewer

Length: 5277 bp
ATGGAGCCCGACGGCGCAGCGCCGATGCAGGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCGGATGATAATGACGAAAATCCTGTTCTCTCGGTTGCACGTTCCACTGGTACTACAGGGCCCATGCTTGTTCCACCAGTGAACAAATTCACCCATGGGAATCAAGCGGGGAAGGCTGTATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCAATCTACTTCCCAGAAGAGCAATGATGCAAACAGAGTACCGTTAAAACCTGCTACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTAATGCCCAAAAAGTTGTCTATGAATCGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCATGAACAAAAATATAGTGAACAGAGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGCACTTAAGGAGACTGAACTGAAGCTGAAGGAAAGTGAACTGAAGCTTAAGTCTGCCCAGCGAACTAAGGAATCAGTTACATGCAAGGATGAGAATGCTAAGGGCCTGCACAGAGATGGACCTGGTAAGTACAGTACAGGATATTCTGATGGTATGCAGACAGAACCAAAAGAGCCAGATAAAAAGCGTATAAAAGTCAGCGGTGCTTTTTCGACTCGGCTAACTACACTAAGCCCACAAGAATTACCTGTTGCAAAACCTTTATTACCGTCAAAAACCCCAGCAATGGAGGACAATACTCAATTGAACACCAGTAAGATTGATCATCTCCAAAAAGAAAATCAAGTGCGTCCAACAGAGTCGAGCATTGTAAAATGGCAAGATCCTAATGATAAACATGTTGCTGGAATGTTGGGAAATATACATACTGGACTGAAAGAAGGTGCTGGCATCAATGCTAAATATATCCAGTCCGATGGGAGGGGTAAGCAGATGGATTCTGTTAACCAGGCTAAATCACTGGCAAATATGACGTGCATTGATTTTCCAAATAACTTGAATAGTGTGGAGTTGAATCATACAAATACTAACACAAACACAAATAGCGGCCATCCAGAACCTGGATCCTTCTTCAACAATCCAACATCAGGAAAGACTTTAATGGGAAGTGGTGACCATCAGGAAACCATATCCATTGACAAGAGACTTGAACCCTCATTCTACAGTAAATGTCAGGCACTCCTAAACAACACAAACCTCTCGAACTGTTTTGGTAATGCAAACGTTACAGGAGATGACAACATGAAGATGCAGTCATTGGTTCAAATGGAGGAAATGCTAGACAAGAATCTGGAGGAAGCACAAGAGCATAGGCGAAGGTGTGAAATTGAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCGCAGAGGGCTCTTCTTGAGGCGAATGCTAGGTGTGATGTTCTTTATCGGAAAAGGGAACTATATTCTGCTGACTTCCGTGCTTACGTTATTAACAATCCCAGTTTGTTATGTTCCTCAAGGCAGAATGAACAAGCTGGACTTGGGTTGGATCACCCTAATAACTTGTCTGAAAATGTGAATTTGATACCCACGTCAAGCCATCAGATGCCGCCGGACCAGAATGACTGCAATCTAGCGGTTATTGATTCCAACATCCAATGTGTTAACAGCTCTCAGATCCCGAATCCCTACCAGCATTTGAGTGGAGAAAACATTGGCTCAGAACCATGCAGTGAACCTGACGCTAGTACATCTGAGCCAGTGCCTCTTCTGGGCAATACTGGCACAGATGGAGTTTGCTCTCCATCCAATGAACCAAATGGTTCAGCAAATGAAGATGATGATACATTTTCATTCGAAAATGAATCTGTTCAACCCAATGGTGAATGCCATCTTGTAGACAAACAAAAGGAGACAGATAATGAATCAAATAGGATAATGTCTATTGACCCCAACGAGGAATCTTTACTTCTCGAAAAAGCTTTGAGGTCTACACTATTTGCAAAGCTAGGAACAAAAAATGTGTTGAAGAACAGTGTTGTATGTAATGGCACAGGGATTGCAGTGGAACGAGAGGCTGAAAATGATGCGAGAAGTGAAGAACCACAAAAAGTAAATGGAAGTTCTCCCGTCTCAGAGGTGGAGAAAAATCAACAATCTGATATTGAGGGCGTTGATGTGCATGAAAAAAGTTTCACTGAGGCTCCTCTTGAGATCCAGAGAAAGCATTCCATCGAACATTTGTCTTTGAATTCTCATTCCAGTGGATATTTTGAGGACAGATGTTCCTTTGGAGGTGACCACTCATTGACTTCTATGATCTTTTCGCCTTCCTACATCTTGAGTAGTGCTTTTGGGTATATGAAGGTTATAGACCCAAACAATGTGATGGAACATCAGGACAGAAGTCAACAGAGTGGAACTCGTGATACTAATATTGAAGAAGGTGCTTGTATAAACTCTGGTAAAGTGCAGTTTAGCAGTACCATGGTAGACACAACGAAAAAGGCTCTGGTGAAATTATGTGATAGAGAAGATGGCTCTTATACCACTGGTCCTGCTGTTGATCCCTTTTGGCCACTTTGCATGTATGAGCTACGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGTTAAGGACTACTCTACCAACGATATGTCTCCACATCAGCATGATCATTCTGAAATTGCTGGTTGTCAGGTTGGACAAACGTTTTGCAAAGAAAAGTGTGATGGTTCAGCTAAAGTTCCCTGGCGTCACAATTGTATGACTTTACCAACTTACCTTGTTGGCTTAAGTACTCTAAAAGCTGACCTGCATTCATATGATTCTGTTCTAGCACGGAGAAATGGTGAATGCTGGAAGAAGTGTTTCAGCCTTTTCTTAGCATTGTCAAAGTCGTTTCAAAAAGATTTTCCTACAGATGGACCGGTCTCGCATGGAAATGACGGCCGCATCGAGGTCCCTGTGAGTTGGAACAGACAGTCATCGTATTTCCAGAGTAGAAATAGCGGAGTGAATCAACCGGATCAAGCTTTGGCTGACAATGAGCAATACCTGGAAAAGGCTCTTTTAATTTTCAGTCAGGAGGTCAATGCACTTGAGGGTATGAAAAAGGCTCTTCCTGTATTGGCACGTGCTCTTGAGGCTGATCCAACATCCGTAGTTCTCTGGGTCTTTTATCTACTTATTTACTATAGCAATATGAAGTCCGTAGGGAAGGATGACATGTTCTCTTGTGCGGTCAACTACAATGATCAATCTTATGAACTTTGGATTATGTTCATCAACAGTCGGGTGCGGCTAAGTGACCGATTGGTTACCTACGATCTTGCCCTCTCAGCACTGTGCCGCCATGCTTCTTCTGCCAAAGATAAAGTGCATGCTAGTGCTTGTATCTTAGACTTAGTTTTGCAAATGGTGGACTGTCTATGCATGTCTGGGAATGTTGAGAGGGCCATTCAGAAAATTTGTGGACTCTTCTCTGCTGCCACAAATATTTATGACCCCGATTCTCCATTGCTTACTGATATGCCCAAATGCCTAACAAGTCATGACAAATGTATTTTGGGGGTGTGTTGTGTTTACTTGGTTATCTATAGGAAACTTCCTGATGCTGTAGTACTGCAGTTTGAATGTCAGAAAGAACTGTTTGCAATAGAATGGCCTTCTATTGAATTAACAGATAATGAAAAGCAGAGGGCTGTCAAACTGATGGAAGCAGTAGAAGATTCTGTATGTCAATCGCTGGATAAAGGTGATTTTAATCTCAGTTTGGCACATTTTTTTGCTCTGAGCCACTTAAGGTGCATGGCAGCTATTGACAGCTTAGAAAGGTGTAGTAATCTTCTGGGTAAATATCTTAAAATGTTCCCGTCCTGCTTAGAGCTTGTTCTAATATCGGCAAGGGCCCAAAAACATGCTCCTGGTGATTCGCTTTTTGACGGGTTTGAGGAAGCCCTAAATAATTGGCCAAAAGAAGTCCCGGGAATTCAATGCATCTGGAATCAGTATGTTGTATATGCCTTTCAGAAAGGACAATTTGATTTTGGTAAAGAACTTATAGGCCGTTGGTTTCATTCTTTTTGGCAAGTTCATTGTATTCGAAATGGTACATTAGATGACATGGAGTGTGATAACTCAGATGGCTCACTAGGATTGGCTTCGGATTCATTTCTGCAGACACTTAATACTGATTCTAAGCAGATGGACGTAATGTTTGGATATCTTAATCTCTCGCTGTATAAGTTAATCCAAAATGATCAGATTGAAGCTCGCTTAGCCCTCGAGAGGGCATTGAAGGCTGCTGTTCCAGAATATTCAAAGCATTGCATGAGGGAGCATGCATTATTTATGCTAAGTGAGGAATCAGGATTTAAGGAGAATGGTTGTCCTAGTGGCATGGAGAAGATTTTGAAACGTTACATAGGTGATGCCGAAGTTTTCCGTTCATCTGAGCCATTATCTAGGCAGTTTATTGCCAACATCAAGAAGCCAAGAGTACGACAGCTGGTTAGTAACGCATTCAGTCCATTCTCATCTGGTTTTGCTCTTGTAAATTCAGTTCTTGAAGTGTTGTATGGACCTTCTCTTTTACCGAAAAAGACTGGTGAGACAAAATGTTTGGTGGATTTTGTTGAAGCTATCTTGGATATAACTCCATCCAACTATCAGTTAGCTATTTCTGTCTGTAAGCTGTTAATTACTGGCAACAATGTGACTGATATTACTTCAGTCAGTGTTTTGTTCTGGGCTAGCTCAAACTTGGTCAGTGCAATCTTTCGTGCTGTCCCAATTCCGCCAGAGTATGTATGGGTAGAAGCTGCAGACATATTGGGCAATATGGTGAATGTTGAGGTTATTTCTGAGAGGTTTTATAAGAGAGCTTTATCTGTATATCCTTTCTCTGTCAAGTTGTGGAAATCGTATTACATGCTTTCTATGATGACTACAGGAAATATGAACACTGTTGTGGAAACAGCAAAGGAAAAAGGTATAGAACTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1758

Amino Acids

195.14

Weight (kDa)

5.57

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 948 - 968 1.5e-09 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 5145
Acc36I ACCTGC 3 cut(s) 19, 322, 3090
AccB7I CCANNNNNTGG 1 cut(s) 1358
AccI GTMKAC 3 cut(s) 2160, 2252, 2754
AccII CGCG 1 cut(s) 41
AclI AACGTT 3 cut(s) 1521, 2978, 4687
AcoI YGGCCR 4 cut(s) 1345, 2837, 3217, 4238
AcsI RAATTY 7 cut(s) 188, 664, 1840, 2512, 3735, 4257, 4825
AcuI CTGAAG 5 cut(s) 429, 779, 785, 800, 4983
AcvI CACGTG 2 cut(s) 341, 3404
AcyI GRCGYC 2 cut(s) 331, 3022
AflII CTTAAG 4 cut(s) 743, 785, 3061, 4069
AflIII ACRYGT 2 cut(s) 1135, 3495
AgeI ACCGGT 1 cut(s) 3196
AjiI CACGTC 2 cut(s) 1272, 1854
AjnI CCWGG 7 cut(s) 322, 859, 1245, 1357, 3017, 3324, 4192
AleI CACNNNNGTG 1 cut(s) 5237
AloI GAACNNNNNNTCC 2 cut(s) 3482, 3514
Alw21I GWGCWC 3 cut(s) 69, 99, 3409
Alw26I GTCTC 7 cut(s) 743, 1435, 2168, 2398, 2931, 3205, 4874
AlwNI CAGNNNCTG 1 cut(s) 1358
Ama87I CYCGRG 5 cut(s) 349, 462, 654, 4252, 4553
ApaI GGGCCC 3 cut(s) 165, 357, 4180
ApeKI GCWGC 6 cut(s) 17, 2893, 3755, 4082, 4571, 5090
ApoI RAATTY 7 cut(s) 188, 664, 1840, 2512, 3735, 4257, 4825
ArsI GACNNNNNNTTYG 6 cut(s) 2964, 2996, 4469, 4501, 4873, 4905
AsiGI ACCGGT 1 cut(s) 3196
Asp700I GAANNNNTTC 4 cut(s) 188, 2130, 2488, 3137
AspLEI GCGC 3 cut(s) 17, 22, 1663
AsuC2I CCSGG 2 cut(s) 4253, 4254
AsuII TTCGAA 2 cut(s) 2118, 4372
AsuNHI GCTAGC 1 cut(s) 5021
AvaI CYCGRG 5 cut(s) 349, 462, 654, 4252, 4553
AvaII GGWCC 6 cut(s) 857, 1876, 2816, 3194, 3229, 4850
BaeGI GKGCMC 4 cut(s) 165, 346, 357, 4180
BaeI ACNNNNGTAYC 2 cut(s) 1838, 1871
BalI TGGCCA 2 cut(s) 2839, 4240
BamHI GGATCC 1 cut(s) 1361
BanII GRGCYC 7 cut(s) 9, 69, 99, 165, 357, 1672, 4180
BauI CACGAG 1 cut(s) 2685
BbrPI CACGTG 2 cut(s) 341, 3404
Bbv12I GWGCWC 3 cut(s) 69, 99, 3409
BbvI GCAGC 6 cut(s) 29, 2905, 3742, 4094, 4558, 5077
BceAI ACGGC 3 cut(s) 28, 3232, 4320
BcgI CGANNNNNNTGC 4 cut(s) 635, 669, 2850, 2884
BciT130I CCWGG 7 cut(s) 324, 861, 1247, 1359, 3019, 3326, 4194
BclI TGATCA 4 cut(s) 1060, 2941, 3523, 4528
BcnI CCSGG 2 cut(s) 4253, 4254
BcoDI GTCTC 7 cut(s) 743, 1435, 2168, 2398, 2931, 3205, 4874
BfoI RGCGCY 1 cut(s) 23
BfrI CTTAAG 4 cut(s) 743, 785, 3061, 4069
BfuAI ACCTGC 3 cut(s) 19, 322, 3090
BlpI GCTNAGC 1 cut(s) 4546
BmcAI AGTACT 2 cut(s) 3067, 3891
Bme1390I CCNGG 9 cut(s) 324, 861, 1247, 1359, 3019, 3326, 4194, 4253, 4254
Bme18I GGWCC 6 cut(s) 857, 1876, 2816, 3194, 3229, 4850
BmeT110I CYCGRG 5 cut(s) 349, 462, 654, 4252, 4553
BmgBI CACGTC 2 cut(s) 1272, 1854
BmiI GGNNCC 8 cut(s) 6, 163, 354, 355, 1363, 2466, 3231, 4178
BmrFI CCNGG 9 cut(s) 324, 861, 1247, 1359, 3019, 3326, 4194, 4253, 4254
BmrI ACTGGG 1 cut(s) 1755
BmtI GCTAGC 1 cut(s) 5025
BmuI ACTGGG 1 cut(s) 1755
BoxI GACNNNNGTC 1 cut(s) 2667
BplI GAGNNNNNCTC 2 cut(s) 2668, 2700
BpmI CTGGAG 1 cut(s) 1610
Bpu10I CCTNAGC 1 cut(s) 837
Bpu1102I GCTNAGC 1 cut(s) 4546
Bpu14I TTCGAA 2 cut(s) 2118, 4372
BpuEI CTTGAG 6 cut(s) 1697, 1762, 2492, 2623, 3389, 3431
BpuMI CCSGG 2 cut(s) 4253, 4254
BsaAI YACGTR 2 cut(s) 341, 3404
BsaBI GATNNNNATC 1 cut(s) 4032
BsaHI GRCGYC 2 cut(s) 331, 3022
BsaI GGTCTC 1 cut(s) 3205
BsaJI CCNNGG 7 cut(s) 39, 196, 604, 2748, 2888, 3017, 4252
BsaWI WCCGGW 2 cut(s) 3196, 3292
BsaXI ACNNNNNCTCC 4 cut(s) 2449, 2479, 3103, 3133
Bse118I RCCGGY 1 cut(s) 3196
Bse3DI GCAATG 4 cut(s) 292, 1029, 3785, 4594
Bse8I GATNNNNATC 1 cut(s) 4032
BseBI CCWGG 7 cut(s) 324, 861, 1247, 1359, 3019, 3326, 4194
BseDI CCNNGG 7 cut(s) 39, 196, 604, 2748, 2888, 3017, 4252
BseGI GGATG 9 cut(s) 112, 332, 832, 1348, 1914, 2066, 3425, 3496, 4928
BseJI GATNNNNATC 1 cut(s) 4032
BseMI GCAATG 4 cut(s) 292, 1029, 3785, 4594
BseRI GAGGAG 1 cut(s) 2457
BseSI GKGCMC 4 cut(s) 165, 346, 357, 4180
BseX3I CGGCCG 1 cut(s) 3217
BseXI GCAGC 6 cut(s) 29, 2905, 3742, 4094, 4558, 5077
BseYI CCCAGC 2 cut(s) 795, 1018
BsgI GTGCAG 2 cut(s) 830, 2753
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 3220
BshTI ACCGGT 1 cut(s) 3196
BsiEI CGRYCG 1 cut(s) 3220
BsiHKAI GWGCWC 3 cut(s) 69, 99, 3409
BsiHKCI CYCGRG 5 cut(s) 349, 462, 654, 4252, 4553
BsiSI CCGG 4 cut(s) 1874, 3197, 3293, 4253
BslFI GGGAC 4 cut(s) 534, 3215, 4235, 5042
BsmAI GTCTC 7 cut(s) 743, 1435, 2168, 2398, 2931, 3205, 4874
BsmBI CGTCTC 1 cut(s) 2398
BsmFI GGGAC 4 cut(s) 534, 3215, 4235, 5042
BsmI GAATGC 8 cut(s) 475, 838, 1690, 2153, 2488, 3085, 3128, 4790
Bso31I GGTCTC 1 cut(s) 3205
BsoBI CYCGRG 5 cut(s) 349, 462, 654, 4252, 4553
Bsp119I TTCGAA 2 cut(s) 2118, 4372
Bsp120I GGGCCC 3 cut(s) 161, 353, 4176
Bsp1286I GDGCHC 9 cut(s) 9, 69, 99, 165, 346, 357, 1672, 3409, 4180
Bsp1720I GCTNAGC 1 cut(s) 4546
Bsp19I CCATGG 2 cut(s) 196, 2748
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 3820
BspLI GGNNCC 8 cut(s) 6, 163, 354, 355, 1363, 2466, 3231, 4178
BspMAI CTGCAG 3 cut(s) 3897, 4449, 5095
BspMI ACCTGC 3 cut(s) 19, 322, 3090
BspOI GCTAGC 1 cut(s) 5025
BspQI GCTCTTC 3 cut(s) 275, 1677, 3393
BspT104I TTCGAA 2 cut(s) 2118, 4372
BspTI CTTAAG 4 cut(s) 743, 785, 3061, 4069
BspTNI GGTCTC 1 cut(s) 3205
BsrDI GCAATG 4 cut(s) 292, 1029, 3785, 4594
BsrFI RCCGGY 1 cut(s) 3196
BssAI RCCGGY 1 cut(s) 3196
BssECI CCNNGG 7 cut(s) 39, 196, 604, 2748, 2888, 3017, 4252
BssNI GRCGYC 2 cut(s) 331, 3022
BssSI CACGAG 1 cut(s) 2685
BssT1I CCWWGG 3 cut(s) 196, 2748, 2888
Bst2BI CACGAG 1 cut(s) 2685
Bst2UI CCWGG 7 cut(s) 324, 861, 1247, 1359, 3019, 3326, 4194
Bst6I CTCTTC 6 cut(s) 106, 275, 1677, 2034, 3393, 3752
BstACI GRCGYC 2 cut(s) 331, 3022
BstAFI CTTAAG 4 cut(s) 743, 785, 3061, 4069
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 2 cut(s) 341, 3404
BstBI TTCGAA 2 cut(s) 2118, 4372
BstC8I GCNNGC 9 cut(s) 95, 232, 528, 845, 1186, 3651, 4543, 4611, 5023
BstDSI CCRYGG 4 cut(s) 39, 196, 604, 2748
BstEII GGTNACC 3 cut(s) 1409, 2558, 3586
BstENI CCTNNNNNAGG 1 cut(s) 3329
BstF5I GGATG 9 cut(s) 112, 332, 832, 1348, 1914, 2066, 3425, 3496, 4928
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 3 cut(s) 17, 22, 1663
BstMAI GTCTC 7 cut(s) 743, 1435, 2168, 2398, 2931, 3205, 4874
BstMCI CGRYCG 1 cut(s) 3220
BstNI CCWGG 7 cut(s) 324, 861, 1247, 1359, 3019, 3326, 4194
BstPAI GACNNNNGTC 1 cut(s) 2667
BstPI GGTNACC 3 cut(s) 1409, 2558, 3586
BstSCI CCNGG 9 cut(s) 322, 859, 1245, 1357, 3017, 3324, 4192, 4251, 4252
BstSLI GKGCMC 4 cut(s) 165, 346, 357, 4180
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 6 cut(s) 29, 2905, 3742, 4094, 4558, 5077
BstX2I RGATCY 5 cut(s) 650, 1120, 1361, 1938, 2475
BstXI CCANNNNNNTGG 1 cut(s) 1214
BstYI RGATCY 5 cut(s) 650, 1120, 1361, 1938, 2475
BstZI CGGCCG 1 cut(s) 3217
BtgI CCRYGG 4 cut(s) 39, 196, 604, 2748
BtrI CACGTC 2 cut(s) 1272, 1854
BtsCI GGATG 9 cut(s) 112, 332, 832, 1348, 1914, 2066, 3425, 3496, 4928
BtsI GCAGTG 2 cut(s) 1999, 2331
BveI ACCTGC 3 cut(s) 19, 322, 3090
Cac8I GCNNGC 9 cut(s) 95, 232, 528, 845, 1186, 3651, 4543, 4611, 5023
CaiI CAGNNNCTG 1 cut(s) 1358
CciI TCATGA 1 cut(s) 3820
CfoI GCGC 3 cut(s) 17, 22, 1663
Cfr10I RCCGGY 1 cut(s) 3196
Cfr42I CCGCGG 1 cut(s) 42
Cfr9I CCCGGG 1 cut(s) 4252
CseI GACGC 4 cut(s) 320, 1076, 2012, 3011
CsiI ACCWGGT 1 cut(s) 859
CspAI ACCGGT 1 cut(s) 3196
EaeI YGGCCR 4 cut(s) 1345, 2837, 3217, 4238
EagI CGGCCG 1 cut(s) 3217
Eam1104I CTCTTC 6 cut(s) 106, 275, 1677, 2034, 3393, 3752
EarI CTCTTC 6 cut(s) 106, 275, 1677, 2034, 3393, 3752
EciI GGCGGA 2 cut(s) 59, 5055
Ecl136II GAGCTC 2 cut(s) 67, 97
EclXI CGGCCG 1 cut(s) 3217
Eco130I CCWWGG 3 cut(s) 196, 2748, 2888
Eco24I GRGCYC 7 cut(s) 9, 69, 99, 165, 357, 1672, 4180
Eco31I GGTCTC 1 cut(s) 3205
Eco32I GATATC 1 cut(s) 4493
Eco47I GGWCC 6 cut(s) 857, 1876, 2816, 3194, 3229, 4850
Eco52I CGGCCG 1 cut(s) 3217
Eco53kI GAGCTC 2 cut(s) 67, 97
Eco57I CTGAAG 5 cut(s) 429, 779, 785, 800, 4983
Eco72I CACGTG 2 cut(s) 341, 3404
Eco88I CYCGRG 5 cut(s) 349, 462, 654, 4252, 4553
Eco91I GGTNACC 3 cut(s) 1409, 2558, 3586
EcoICRI GAGCTC 2 cut(s) 67, 97
EcoNI CCTNNNNNAGG 1 cut(s) 3329
EcoO109I RGGNCCY 5 cut(s) 161, 353, 841, 3229, 4176
EcoO65I GGTNACC 3 cut(s) 1409, 2558, 3586
EcoRI GAATTC 2 cut(s) 2512, 4257
EcoRII CCWGG 7 cut(s) 322, 859, 1245, 1357, 3017, 3324, 4192
EcoRV GATATC 1 cut(s) 4493
EcoT14I CCWWGG 3 cut(s) 196, 2748, 2888
EcoT22I ATGCAT 3 cut(s) 3704, 4268, 4615
EcoT38I GRGCYC 7 cut(s) 9, 69, 99, 165, 357, 1672, 4180
ErhI CCWWGG 3 cut(s) 196, 2748, 2888
Esp3I CGTCTC 1 cut(s) 2398
FalI AAGNNNNNCTT 2 cut(s) 1785, 1817
FaqI GGGAC 4 cut(s) 534, 3215, 4235, 5042
FauI CCCGC 1 cut(s) 202
FauNDI CATATG 1 cut(s) 3091
FbaI TGATCA 4 cut(s) 1060, 2941, 3523, 4528
FblI GTMKAC 3 cut(s) 2160, 2252, 2754
FokI GGATG 9 cut(s) 119, 339, 839, 1335, 1901, 2053, 3412, 3503, 4915
FriOI GRGCYC 7 cut(s) 9, 69, 99, 165, 357, 1672, 4180
GlaI GCGC 3 cut(s) 16, 21, 1662
GsaI CCCAGC 2 cut(s) 799, 1022
GsuI CTGGAG 1 cut(s) 1610
HaeII RGCGCY 1 cut(s) 23
HapII CCGG 4 cut(s) 1874, 3197, 3293, 4253
HgaI GACGC 4 cut(s) 320, 1076, 2012, 3011
HhaI GCGC 3 cut(s) 17, 22, 1663
Hin1I GRCGYC 2 cut(s) 331, 3022
Hin6I GCGC 3 cut(s) 15, 20, 1661
HinP1I GCGC 3 cut(s) 15, 20, 1661
HincII GTYRAC 4 cut(s) 1243, 1927, 2672, 3514
HindII GTYRAC 4 cut(s) 1243, 1927, 2672, 3514
HindIII AAGCTT 6 cut(s) 376, 435, 782, 1647, 2241, 3300
HpaI GTTAAC 2 cut(s) 1243, 1927
HpaII CCGG 4 cut(s) 1874, 3197, 3293, 4253
Hpy99I CGWCG 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 331, 3022
HspAI GCGC 3 cut(s) 15, 20, 1661
Ksp22I TGATCA 4 cut(s) 1060, 2941, 3523, 4528
KspAI GTTAAC 2 cut(s) 1243, 1927
KspI CCGCGG 1 cut(s) 42
LguI GCTCTTC 3 cut(s) 275, 1677, 3393
LmnI GCTCC 6 cut(s) 4, 64, 72, 2470, 4195, 4606
Lsp1109I GCAGC 6 cut(s) 29, 2905, 3742, 4094, 4558, 5077
MabI ACCWGGT 1 cut(s) 859
MfeI CAATTG 2 cut(s) 1040, 3028
MflI RGATCY 5 cut(s) 650, 1120, 1361, 1938, 2475
MhlI GDGCHC 9 cut(s) 9, 69, 99, 165, 346, 357, 1672, 3409, 4180
MlsI TGGCCA 2 cut(s) 2839, 4240
MluNI TGGCCA 2 cut(s) 2839, 4240
MlyI GAGTC 4 cut(s) 44, 946, 1106, 3738
MmeI TCCRAC 8 cut(s) 1115, 1403, 1788, 1935, 2950, 3221, 3446, 4956
Mox20I TGGCCA 2 cut(s) 2839, 4240
Mph1103I ATGCAT 3 cut(s) 3704, 4268, 4615
MroXI GAANNNNTTC 4 cut(s) 188, 2130, 2488, 3137
MscI TGGCCA 2 cut(s) 2839, 4240
Msp20I TGGCCA 2 cut(s) 2839, 4240
MspA1I CMGCKG 3 cut(s) 41, 939, 4777
MspCI CTTAAG 4 cut(s) 743, 785, 3061, 4069
MspI CCGG 4 cut(s) 1874, 3197, 3293, 4253
MspR9I CCNGG 9 cut(s) 324, 861, 1247, 1359, 3019, 3326, 4194, 4253, 4254
MteI GCGCNGCGC 1 cut(s) 18
MunI CAATTG 2 cut(s) 1040, 3028
Mva1269I GAATGC 8 cut(s) 475, 838, 1690, 2153, 2488, 3085, 3128, 4790
MvaI CCWGG 7 cut(s) 324, 861, 1247, 1359, 3019, 3326, 4194
MvnI CGCG 1 cut(s) 41
NciI CCSGG 2 cut(s) 4253, 4254
NcoI CCATGG 2 cut(s) 196, 2748
NdeI CATATG 1 cut(s) 3091
NheI GCTAGC 1 cut(s) 5021
NlaIV GGNNCC 8 cut(s) 6, 163, 354, 355, 1363, 2466, 3231, 4178
NmeAIII GCCGAG 1 cut(s) 934
NmuCI GTSAC 5 cut(s) 1409, 2558, 3023, 3575, 4984
NsiI ATGCAT 3 cut(s) 3704, 4268, 4615
NspV TTCGAA 2 cut(s) 2118, 4372
OliI CACNNNNGTG 1 cut(s) 5237
PaeI GCATGC 2 cut(s) 3653, 4613
PaeR7I CTCGAG 3 cut(s) 462, 654, 4553
PagI TCATGA 1 cut(s) 3820
PciI ACATGT 2 cut(s) 1135, 3495
PciSI GCTCTTC 3 cut(s) 275, 1677, 3393
PcsI WCGNNNNNNNCGW 1 cut(s) 3222
PctI GAATGC 8 cut(s) 475, 838, 1690, 2153, 2488, 3085, 3128, 4790
PdmI GAANNNNTTC 4 cut(s) 188, 2130, 2488, 3137
PflMI CCANNNNNTGG 1 cut(s) 1358
PinAI ACCGGT 1 cut(s) 3196
PleI GAGTC 4 cut(s) 43, 946, 1105, 3738
PmaCI CACGTG 2 cut(s) 341, 3404
PmlI CACGTG 2 cut(s) 341, 3404
PpsI GAGTC 4 cut(s) 43, 946, 1105, 3738
Ppu21I YACGTR 2 cut(s) 341, 3404
PpuMI RGGWCCY 1 cut(s) 3229
PscI ACATGT 2 cut(s) 1135, 3495
PshAI GACNNNNGTC 1 cut(s) 2667
PsiI TTATAA 1 cut(s) 5145
Psp124BI GAGCTC 2 cut(s) 69, 99
Psp1406I AACGTT 3 cut(s) 1521, 2978, 4687
Psp5II RGGWCCY 1 cut(s) 3229
Psp6I CCWGG 7 cut(s) 322, 859, 1245, 1357, 3017, 3324, 4192
PspCI CACGTG 2 cut(s) 341, 3404
PspEI GGTNACC 3 cut(s) 1409, 2558, 3586
PspFI CCCAGC 2 cut(s) 795, 1018
PspGI CCWGG 7 cut(s) 322, 859, 1245, 1357, 3017, 3324, 4192
PspN4I GGNNCC 8 cut(s) 6, 163, 354, 355, 1363, 2466, 3231, 4178
PspOMI GGGCCC 3 cut(s) 161, 353, 4176
PspPPI RGGWCCY 1 cut(s) 3229
PspXI VCTCGAGB 1 cut(s) 462
PsrI GAACNNNNNNTAC 4 cut(s) 2674, 2706, 4815, 4847
PstI CTGCAG 3 cut(s) 3897, 4449, 5095
PstNI CAGNNNCTG 1 cut(s) 1358
PsuI RGATCY 5 cut(s) 650, 1120, 1361, 1938, 2475
PvuII CAGCTG 1 cut(s) 4777
SacI GAGCTC 2 cut(s) 69, 99
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 3 cut(s) 275, 1677, 3393
ScaI AGTACT 2 cut(s) 3067, 3891
SchI GAGTC 4 cut(s) 44, 946, 1106, 3738
ScrFI CCNGG 9 cut(s) 324, 861, 1247, 1359, 3019, 3326, 4194, 4253, 4254
SduI GDGCHC 9 cut(s) 9, 69, 99, 165, 346, 357, 1672, 3409, 4180
SexAI ACCWGGT 1 cut(s) 859
Sfr274I CTCGAG 3 cut(s) 462, 654, 4553
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 2 cut(s) 2118, 4372
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 6 cut(s) 857, 1876, 2816, 3194, 3229, 4850
SlaI CTCGAG 3 cut(s) 462, 654, 4553
SmaI CCCGGG 1 cut(s) 4254
SphI GCATGC 2 cut(s) 3653, 4613
SspI AATATT 3 cut(s) 2698, 3766, 4586
SstI GAGCTC 2 cut(s) 69, 99
StyD4I CCNGG 9 cut(s) 322, 859, 1245, 1357, 3017, 3324, 4192, 4251, 4252
StyI CCWWGG 3 cut(s) 196, 2748, 2888
TaqII GACCGA 1 cut(s) 3594
TatI WGTACW 5 cut(s) 867, 872, 2009, 3065, 3889
TauI GCSGC 6 cut(s) 44, 1347, 1873, 3222, 3571, 3621
TseFI GTSAC 5 cut(s) 1409, 2558, 3023, 3575, 4984
TseI GCWGC 6 cut(s) 17, 2893, 3755, 4082, 4571, 5090
Tsp45I GTSAC 5 cut(s) 1409, 2558, 3023, 3575, 4984
TspGWI ACGGA 6 cut(s) 593, 1727, 3124, 3418, 3469, 4703
TspMI CCCGGG 1 cut(s) 4252
Van91I CCANNNNNTGG 1 cut(s) 1358
Vha464I CTTAAG 4 cut(s) 743, 785, 3061, 4069
VpaK11BI GGWCC 6 cut(s) 857, 1876, 2816, 3194, 3229, 4850
XagI CCTNNNNNAGG 1 cut(s) 3329
XapI RAATTY 7 cut(s) 188, 664, 1840, 2512, 3735, 4257, 4825
XbaI TCTAGA 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 3 cut(s) 1355, 1961, 5076
XhoI CTCGAG 3 cut(s) 462, 654, 4553
XmaI CCCGGG 1 cut(s) 4252
XmiI GTMKAC 3 cut(s) 2160, 2252, 2754
XmnI GAANNNNTTC 4 cut(s) 188, 2130, 2488, 3137
ZrmI AGTACT 2 cut(s) 3067, 3891
Zsp2I ATGCAT 3 cut(s) 3704, 4268, 4615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.