Rw1G029820

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003732
Physical Location & Seq
Reverse (-)
57507153 .. 57515485
8333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029820.1

Sequence Viewer

Length: 5235 bp
ATGGAGCCCGACGGCGCAGCGCCGATGCAGGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCGGATGATAATGACGAAAATCCTGTTCTCTCGGTTGCACGTTCCACTGGTACTACAGGGCCCATGCTGGTGAACAAATTCACCCATGGGAATCAAGCGGGGAAGGCTGTATCTCCTGCAAGCTCTGCTGATATTCAGTGCCAAACCTCCAAGCAATCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCGTTAAAACCTGCTACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTAATGCCCAAAAAGTTGTCTATGAATCGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCATGAACAAAAATATAGTGAACAGGGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGCACTTAAGGAGACTGAACTGAAGCTCAAGGAAAGTGAACTGAAGCTTAAGTCTGCCCAGCGAACTAAGGAATCAGTTACATGCAAGGATGAGAATGCTAAGGGCCTGCACAGAGATGGACCTGGTAAGTACAGTACAGGATATTCTGATGGTATGCAGACAGAACCAAAAGAGCCAGATAAAAAGCGTATAAAAGTCAGCGGTGCTTTTTCGACTCGGCTAACTACACTAAGCCCACAAGAATTACCTGTTGCAAAACCTTTATTACCGTCAAAAACCCCAGCAATGGAGGACAATACTCAATTGAACACCAGTAAGATTGATCATCTCCAAAAAGAAAATCAAGTGCGTCCAACAGAGTCGAGCATTGTAAAATGGCAAGATCCTAATGATAAACATGTTGCTGGAATGTTGGGAAATATACATACTGGACTGAAAGAAGGTGCTGGCATCAATGCTAAATATATCCAGTCCGATGGGAGGGGTAAGCAGATGGATTCTGTTAACCAGGCTAAATCACTGGCAAATATGACGTGCATTGATTTTCCAAATAACTTGAATAGTGTGGAGTTGAATCATACAAATACTAACACAAACACAAATAGCGGCCATCCAGAACCTGGATCCTTCTTCAACAATCCAACATCAGGAAAGACTTTAATGGGAAGTGGTGACCATCAGGAAACCATATCCATTGACAAGAGACTTGAACCCTCATTCTACAGTAAATGTCAGGCACTCCTAAACAACACAAACCTCTCGAACTGTTTTGGTAATGCAAACGTTACAGGAGATGACAACATGAAGATGCAGTCATTGGTTCAAATGGAGGAAATGCTAGACAAGAATCTGGAGGAAGCACAAGAGCATAGGCGAAGGTGTGAAATTGAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCGCAGAGGGCTCTTCTTGAGGCGAATGCTAGGTGTGATGTTCTTTATCGGAAAAGGGAACTATATTCTGCTGACTTCCGTGCTTACGTTATTAACAATCCCAGTTTGTTATGTTCCTCAAGGCAGAATGAACAAGCTGGACTTGGGTTGGATCACCCTAATAACTTGTCTGAAAATGTGAATTTGATACCCACGTCAAGCCATCAGATGCCGCCGGACCAGAATGACTGCAATCTAGCGGTTATTGATTCCAACATCCAATGTCATTTGAGTGGAGAAAACATTGGCTCAGAACCATGCAGTGAACCTGACGCTAGTACATCTGAGCCAGTGCCTCTTCTGGGCAATACTGGCACAGATGGAGTTTGCTCTCCATCCAATGAACCAAATGGTTCAGCAAATGAAGATGATGATACATTTTCATTCGAAAATGAATCTGTTCAACCCAATGGTGAATGCCATCTTGTAGACAAACAAAAGGAGACAGATAATGAATCAAATAGGATAATGTCTATTGACCCCAACGAGGAATCTTTACTTCTCGAAAAAGCTTTGAGGTCTACACTATTTGCAAAGCTAGGAACAAAAAATGTGTTGAAGAACAGTGTTGTATGTAATGGCACAGGGATTGCAGTGGAACGAGAGGCTGAAAATGATGCGAGAAGTGAAGAACCACAAAAAGTAAACGGAAGTTCTCCCGTCTCAGAGGTGGAGAAAAATCAACAATCTGATATTGAGGGCGTTGATGTGCATGAAAAAAGTTTCACTGAGGCTCCTCTTGAGATCCAGAGAAAGCATTCCATCGAACATTTGTCTTTGAATTCTCATTCCAGTGGATATTTTGAGGACAGATGTTCCTTTGGAGGTGACCACTCATTGACTTCTATGATCTTTTCGCCTTCCTACATCTTGAGTAGTGCTATTGGGTATATGAAGGTTATAGACCCAAACAATGTGATGGAACATCAGGACAGAAGTCAACAGAGTGGAACTCGTGATACTAATATTGAAGAAGGTGCTTGTATAAACTCTGGTAAAGTGCAGTTTAGCAGTACCATGGTAGACACAACGAAAAAGGCTCTGGTGAAATTATGTGATAGAGAAGATGGCTCTTATACCACTGGTCCTGCTGTTGATCCCTTTTGGCCACTTTGCATGTATGAGCTACGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGTTAAGGACTACTCTACCAACGATATGTCTCCACATCAGCATGATCATTCTGAAATTGCTGGTTGTCAGGTTGGACAAACGTTTTGCAAAGAAAAGTGTGATGGTTCAGCAAAAGTTCCCTGGCGTCACAATTGTATGACTTTACCAACTTACCTTGTTGGCTTAAGTACTCTAAAAGCTGATCTGCATTCATATGATTCTGTTCTAGCACGGAGAAATGGTGAATGCTGGAAGAAGTGTTTCAGCCTTTTCTTAGCATTGTCAAAGTCGTTTCAAAAAGATTTTCCTACAGATGGACCGGTCTCGCATGGAAATGACGGCCGCATCGAGGTCCCTGTGAGTTGGAACAGACAGTCATCGTATTTCCAGAGTAGAAATAGCGGAGTGAATCAACCGGATCAAGCTTTGGCTGACAATGAGCAATACCTGGAAAAGGCTCTTTTAATTTTCAGTCAGGAGGTCAATGCACTTGAGGGTATGAAAAAGGCTCTTCCTGTATTGGCACGTGCTCTTGAGGCTGATCCAACATCCGTAGTTCTCTGGGTCTTTTATCTACTTATTTACTATAGCAATATGAAGTCAGTAGGGAAGGATGACATGTTCTCTTGTGCGGTCAACTACAATGATCAATCTTATGAACTTTGGATTATGTTCATCAACAGTCGGGTGCGGCTAAGTGACCGATTGGTTACCTACGATCTTGCCCTCTCAGCACTGTGCCGCCATGCTTCTTCTGCCAAAGATAAAGTGCATGCTAGTGCTTGTATCTTAGACTTAGTTTTGCAAATGGTGGACTGTCTATGCATGTCTGGGAATGTTGAGAGGGCCATTCAGAAAATTTGTGGACTCTTCTCTGCTGCCACAAATATTTATGACCCCGATTCTCCATTGCTTACTGATATGCCCAAATGCCTAACAAGTCATGACAAATGTATTTTGGGGGTGTGTTGTGTTTACTTGGTTATCTATAGGAAACTTCCTGATGCTGTAGTACTGCAGTTTGAATGTCAGAAAGAACTGTTTGCAATAGAATGGCCTTCTATTGAATTAACAGATAATGAAAAGCAGAGGGCTGTCAAACTGATGGAAGCAGTAGAAGATTCTGTATGTCAATCGCTGGATAAAGGTGATTTTAATCTCAGTTTGGCACATTTTTTTGCTCTGAGCCACTTAAGGTGCATGGCAGCTATTGACAGCTTAGAAAGGTGTAGTAATCTTCTGGGTAAATATCTTAAAATGTTCCCGTCCTGCTTAGAGCTTGTTCTAATATCGGCAAGGGCCCAAAAACATGCTCCTGGTGATTCGCTTTTTGACGGGTTTGAGGAAGCCCTAAATAATTGGCCAAAAGAAGTCCCGGGAATTCAATGCATCTGGAATCAGTATGTTGTATATGCCTTTCAGAAAGGACAATTTGATTTTGGTAAAGAACTTATAGGCCGTTGGTTTCATTCTTTTTGGCAAGTTCATTGTATTCGAAATGGTACATTAGATGACATGGAGTGTGATAACTCAGATGGCTCACTAGGATTGGCTTCGGATTCATTTCTGCAGAAACTTCATACTGATTCTAAGCAGATGGACGTAATGTTTGGATATCTTAATCTCTCGCTGTATAAGTTAATCCAAAATGATCAGATTGAAGCTCGCTTAGCCCTCGAGAGGGCATTGAAGGCTGCTGTTCCAGAATATTCAAAGCATTGCATGAGGGAGCATGCATTATTTATGCTAAGTGAGGAATCAGGATTTAAGGAGAATGGTTGTCCTAGTGGCATGGAGAAGATTTTGAAACGTTACATAGGTGATGCCGAAGTTTTCCGTTCATCTGAGCCATTATCTAGGCAGTTTATTGCCAACATCAAGAAGCCAAGAGTACGACAGCTGGTTAGTAACGCATTCAGTCCATTCTCATCTGATTTTGCTCTTGTAAATTCAGTTCTTGAAGTGTTGTATGGACCTTCTCTTTTACCGAAAAAGACTGGTGAGACAAAATGTTTGGTGGATTTTGTTGAAGCTATCTTGGATATAACTCCATCCAACTATCAGTTAGCTATTTCTGTCTGTAAGCTGTTAATTACTGGCAACAATGTGACTGATATTACTTCAGTCAGTGTTTTGTTCTGGGCTAGCTCAAACTTGGTCAGTGCAATCTTTCGTGCTGTCCCAATTCCGCCAGAGTATGTATGGGTAGAAGCTGCAGACATATTGGGCAATATGGTGAATGTTGAGGTTATTTCTGAGAGGTTTTATAAGAGAGCTTTATCTGTATATCCTTTCTCTGTCAAGTTGTGGAAATCGTATTACATGCTTTCTATGATGACTACAGGAAATATGAACACTGTTGTGGAAACAGCAAAGGAAAAAGGTATAGAACTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1744

Amino Acids

193.69

Weight (kDa)

5.59

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 934 - 954 1.5e-09 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 5103
Acc36I ACCTGC 2 cut(s) 19, 313
AccB7I CCANNNNNTGG 1 cut(s) 1349
AccI GTMKAC 3 cut(s) 2118, 2210, 2712
AccII CGCG 1 cut(s) 41
AclI AACGTT 3 cut(s) 1512, 2936, 4645
AclWI GGATC 9 cut(s) 649, 1106, 1347, 1360, 1809, 2428, 2780, 3261, 3371
AcoI YGGCCR 4 cut(s) 1336, 2795, 3175, 4196
AcsI RAATTY 7 cut(s) 179, 655, 1831, 2470, 3693, 4215, 4783
AcuI CTGAAG 4 cut(s) 420, 770, 791, 4941
AcvI CACGTG 2 cut(s) 332, 3362
AcyI GRCGYC 2 cut(s) 322, 2980
AflII CTTAAG 4 cut(s) 734, 776, 3019, 4027
AflIII ACRYGT 2 cut(s) 1126, 3453
AgeI ACCGGT 1 cut(s) 3154
AjiI CACGTC 2 cut(s) 1263, 1845
AjnI CCWGG 7 cut(s) 313, 850, 1236, 1348, 2975, 3282, 4150
AleI CACNNNNGTG 1 cut(s) 5195
AloI GAACNNNNNNTCC 2 cut(s) 3440, 3472
Alw21I GWGCWC 3 cut(s) 69, 99, 3367
Alw26I GTCTC 7 cut(s) 734, 1426, 2126, 2356, 2889, 3163, 4832
AlwI GGATC 9 cut(s) 649, 1106, 1347, 1360, 1809, 2428, 2780, 3261, 3371
AlwNI CAGNNNCTG 1 cut(s) 1349
Ama87I CYCGRG 5 cut(s) 340, 453, 645, 4210, 4511
ApaI GGGCCC 3 cut(s) 165, 348, 4138
ApeKI GCWGC 6 cut(s) 17, 2851, 3713, 4040, 4529, 5048
ApoI RAATTY 7 cut(s) 179, 655, 1831, 2470, 3693, 4215, 4783
ArsI GACNNNNNNTTYG 6 cut(s) 2922, 2954, 4427, 4459, 4831, 4863
AsiGI ACCGGT 1 cut(s) 3154
Asp700I GAANNNNTTC 4 cut(s) 179, 2088, 2446, 3095
AspLEI GCGC 3 cut(s) 17, 22, 1654
AsuC2I CCSGG 2 cut(s) 4211, 4212
AsuII TTCGAA 2 cut(s) 2076, 4330
AsuNHI GCTAGC 1 cut(s) 4979
AvaI CYCGRG 5 cut(s) 340, 453, 645, 4210, 4511
AvaII GGWCC 6 cut(s) 848, 1867, 2774, 3152, 3187, 4808
BaeGI GKGCMC 4 cut(s) 165, 337, 348, 4138
BaeI ACNNNNGTAYC 2 cut(s) 1829, 1862
BalI TGGCCA 2 cut(s) 2797, 4198
BamHI GGATCC 1 cut(s) 1352
BanII GRGCYC 7 cut(s) 9, 69, 99, 165, 348, 1663, 4138
BauI CACGAG 1 cut(s) 2643
BbrPI CACGTG 2 cut(s) 332, 3362
Bbv12I GWGCWC 3 cut(s) 69, 99, 3367
BbvI GCAGC 6 cut(s) 29, 2863, 3700, 4052, 4516, 5035
BceAI ACGGC 3 cut(s) 28, 3190, 4278
BcgI CGANNNNNNTGC 4 cut(s) 626, 660, 2808, 2842
BciT130I CCWGG 7 cut(s) 315, 852, 1238, 1350, 2977, 3284, 4152
BclI TGATCA 4 cut(s) 1051, 2899, 3481, 4486
BcnI CCSGG 2 cut(s) 4211, 4212
BcoDI GTCTC 7 cut(s) 734, 1426, 2126, 2356, 2889, 3163, 4832
BfoI RGCGCY 1 cut(s) 23
BfrI CTTAAG 4 cut(s) 734, 776, 3019, 4027
BfuAI ACCTGC 2 cut(s) 19, 313
BlpI GCTNAGC 1 cut(s) 4504
BmcAI AGTACT 2 cut(s) 3025, 3849
Bme1390I CCNGG 9 cut(s) 315, 852, 1238, 1350, 2977, 3284, 4152, 4211, 4212
Bme18I GGWCC 6 cut(s) 848, 1867, 2774, 3152, 3187, 4808
BmeT110I CYCGRG 5 cut(s) 340, 453, 645, 4210, 4511
BmgBI CACGTC 2 cut(s) 1263, 1845
BmiI GGNNCC 8 cut(s) 6, 163, 345, 346, 1354, 2424, 3189, 4136
BmrFI CCNGG 9 cut(s) 315, 852, 1238, 1350, 2977, 3284, 4152, 4211, 4212
BmrI ACTGGG 1 cut(s) 1746
BmtI GCTAGC 1 cut(s) 4983
BmuI ACTGGG 1 cut(s) 1746
BoxI GACNNNNGTC 1 cut(s) 2625
BplI GAGNNNNNCTC 2 cut(s) 2626, 2658
BpmI CTGGAG 1 cut(s) 1601
Bpu10I CCTNAGC 1 cut(s) 828
Bpu1102I GCTNAGC 1 cut(s) 4504
Bpu14I TTCGAA 2 cut(s) 2076, 4330
BpuEI CTTGAG 7 cut(s) 740, 1688, 1753, 2450, 2581, 3347, 3389
BpuMI CCSGG 2 cut(s) 4211, 4212
BsaAI YACGTR 2 cut(s) 332, 3362
BsaBI GATNNNNATC 1 cut(s) 3990
BsaHI GRCGYC 2 cut(s) 322, 2980
BsaI GGTCTC 1 cut(s) 3163
BsaJI CCNNGG 7 cut(s) 39, 187, 595, 2706, 2846, 2975, 4210
BsaWI WCCGGW 2 cut(s) 3154, 3250
BsaXI ACNNNNNCTCC 4 cut(s) 2407, 2437, 3061, 3091
Bse118I RCCGGY 1 cut(s) 3154
Bse3DI GCAATG 4 cut(s) 283, 1020, 3743, 4552
Bse8I GATNNNNATC 1 cut(s) 3990
BseBI CCWGG 7 cut(s) 315, 852, 1238, 1350, 2977, 3284, 4152
BseDI CCNNGG 7 cut(s) 39, 187, 595, 2706, 2846, 2975, 4210
BseGI GGATG 9 cut(s) 112, 323, 823, 1339, 1905, 2024, 3383, 3454, 4886
BseJI GATNNNNATC 1 cut(s) 3990
BseMI GCAATG 4 cut(s) 283, 1020, 3743, 4552
BseRI GAGGAG 1 cut(s) 2415
BseSI GKGCMC 4 cut(s) 165, 337, 348, 4138
BseX3I CGGCCG 1 cut(s) 3175
BseXI GCAGC 6 cut(s) 29, 2863, 3700, 4052, 4516, 5035
BseYI CCCAGC 2 cut(s) 786, 1009
BsgI GTGCAG 2 cut(s) 821, 2711
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 3178
BshTI ACCGGT 1 cut(s) 3154
BsiEI CGRYCG 1 cut(s) 3178
BsiHKAI GWGCWC 3 cut(s) 69, 99, 3367
BsiHKCI CYCGRG 5 cut(s) 340, 453, 645, 4210, 4511
BsiSI CCGG 4 cut(s) 1865, 3155, 3251, 4211
BslFI GGGAC 4 cut(s) 525, 3173, 4193, 5000
BsmAI GTCTC 7 cut(s) 734, 1426, 2126, 2356, 2889, 3163, 4832
BsmBI CGTCTC 1 cut(s) 2356
BsmFI GGGAC 4 cut(s) 525, 3173, 4193, 5000
BsmI GAATGC 8 cut(s) 466, 829, 1681, 2111, 2446, 3043, 3086, 4748
Bso31I GGTCTC 1 cut(s) 3163
BsoBI CYCGRG 5 cut(s) 340, 453, 645, 4210, 4511
Bsp119I TTCGAA 2 cut(s) 2076, 4330
Bsp120I GGGCCC 3 cut(s) 161, 344, 4134
Bsp1286I GDGCHC 9 cut(s) 9, 69, 99, 165, 337, 348, 1663, 3367, 4138
Bsp1720I GCTNAGC 1 cut(s) 4504
Bsp19I CCATGG 2 cut(s) 187, 2706
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 3778
BspLI GGNNCC 8 cut(s) 6, 163, 345, 346, 1354, 2424, 3189, 4136
BspMAI CTGCAG 3 cut(s) 3855, 4407, 5053
BspMI ACCTGC 2 cut(s) 19, 313
BspOI GCTAGC 1 cut(s) 4983
BspPI GGATC 9 cut(s) 649, 1106, 1347, 1360, 1809, 2428, 2780, 3261, 3371
BspQI GCTCTTC 3 cut(s) 266, 1668, 3351
BspT104I TTCGAA 2 cut(s) 2076, 4330
BspTI CTTAAG 4 cut(s) 734, 776, 3019, 4027
BspTNI GGTCTC 1 cut(s) 3163
BsrDI GCAATG 4 cut(s) 283, 1020, 3743, 4552
BsrFI RCCGGY 1 cut(s) 3154
BssAI RCCGGY 1 cut(s) 3154
BssECI CCNNGG 7 cut(s) 39, 187, 595, 2706, 2846, 2975, 4210
BssNI GRCGYC 2 cut(s) 322, 2980
BssSI CACGAG 1 cut(s) 2643
BssT1I CCWWGG 3 cut(s) 187, 2706, 2846
Bst2BI CACGAG 1 cut(s) 2643
Bst2UI CCWGG 7 cut(s) 315, 852, 1238, 1350, 2977, 3284, 4152
Bst6I CTCTTC 6 cut(s) 106, 266, 1668, 1992, 3351, 3710
BstACI GRCGYC 2 cut(s) 322, 2980
BstAFI CTTAAG 4 cut(s) 734, 776, 3019, 4027
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBAI YACGTR 2 cut(s) 332, 3362
BstBI TTCGAA 2 cut(s) 2076, 4330
BstC8I GCNNGC 9 cut(s) 95, 223, 519, 836, 1177, 3609, 4501, 4569, 4981
BstDSI CCRYGG 4 cut(s) 39, 187, 595, 2706
BstEII GGTNACC 3 cut(s) 1400, 2516, 3544
BstENI CCTNNNNNAGG 1 cut(s) 3287
BstF5I GGATG 9 cut(s) 112, 323, 823, 1339, 1905, 2024, 3383, 3454, 4886
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 3 cut(s) 17, 22, 1654
BstMAI GTCTC 7 cut(s) 734, 1426, 2126, 2356, 2889, 3163, 4832
BstMCI CGRYCG 1 cut(s) 3178
BstNI CCWGG 7 cut(s) 315, 852, 1238, 1350, 2977, 3284, 4152
BstPAI GACNNNNGTC 1 cut(s) 2625
BstPI GGTNACC 3 cut(s) 1400, 2516, 3544
BstSCI CCNGG 9 cut(s) 313, 850, 1236, 1348, 2975, 3282, 4150, 4209, 4210
BstSLI GKGCMC 4 cut(s) 165, 337, 348, 4138
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 6 cut(s) 29, 2863, 3700, 4052, 4516, 5035
BstX2I RGATCY 4 cut(s) 641, 1111, 1352, 2433
BstXI CCANNNNNNTGG 1 cut(s) 1205
BstYI RGATCY 4 cut(s) 641, 1111, 1352, 2433
BstZI CGGCCG 1 cut(s) 3175
BtgI CCRYGG 4 cut(s) 39, 187, 595, 2706
BtrI CACGTC 2 cut(s) 1263, 1845
BtsCI GGATG 9 cut(s) 112, 323, 823, 1339, 1905, 2024, 3383, 3454, 4886
BtsI GCAGTG 2 cut(s) 1957, 2289
BveI ACCTGC 2 cut(s) 19, 313
Cac8I GCNNGC 9 cut(s) 95, 223, 519, 836, 1177, 3609, 4501, 4569, 4981
CaiI CAGNNNCTG 1 cut(s) 1349
CciI TCATGA 1 cut(s) 3778
CfoI GCGC 3 cut(s) 17, 22, 1654
Cfr10I RCCGGY 1 cut(s) 3154
Cfr42I CCGCGG 1 cut(s) 42
Cfr9I CCCGGG 1 cut(s) 4210
CseI GACGC 4 cut(s) 311, 1067, 1970, 2969
CsiI ACCWGGT 1 cut(s) 850
CspAI ACCGGT 1 cut(s) 3154
EaeI YGGCCR 4 cut(s) 1336, 2795, 3175, 4196
EagI CGGCCG 1 cut(s) 3175
Eam1104I CTCTTC 6 cut(s) 106, 266, 1668, 1992, 3351, 3710
EarI CTCTTC 6 cut(s) 106, 266, 1668, 1992, 3351, 3710
EciI GGCGGA 2 cut(s) 59, 5013
Ecl136II GAGCTC 2 cut(s) 67, 97
EclXI CGGCCG 1 cut(s) 3175
Eco130I CCWWGG 3 cut(s) 187, 2706, 2846
Eco24I GRGCYC 7 cut(s) 9, 69, 99, 165, 348, 1663, 4138
Eco31I GGTCTC 1 cut(s) 3163
Eco32I GATATC 1 cut(s) 4451
Eco47I GGWCC 6 cut(s) 848, 1867, 2774, 3152, 3187, 4808
Eco52I CGGCCG 1 cut(s) 3175
Eco53kI GAGCTC 2 cut(s) 67, 97
Eco57I CTGAAG 4 cut(s) 420, 770, 791, 4941
Eco72I CACGTG 2 cut(s) 332, 3362
Eco88I CYCGRG 5 cut(s) 340, 453, 645, 4210, 4511
Eco91I GGTNACC 3 cut(s) 1400, 2516, 3544
EcoICRI GAGCTC 2 cut(s) 67, 97
EcoNI CCTNNNNNAGG 1 cut(s) 3287
EcoO109I RGGNCCY 5 cut(s) 161, 344, 832, 3187, 4134
EcoO65I GGTNACC 3 cut(s) 1400, 2516, 3544
EcoRI GAATTC 2 cut(s) 2470, 4215
EcoRII CCWGG 7 cut(s) 313, 850, 1236, 1348, 2975, 3282, 4150
EcoRV GATATC 1 cut(s) 4451
EcoT14I CCWWGG 3 cut(s) 187, 2706, 2846
EcoT22I ATGCAT 3 cut(s) 3662, 4226, 4573
EcoT38I GRGCYC 7 cut(s) 9, 69, 99, 165, 348, 1663, 4138
ErhI CCWWGG 3 cut(s) 187, 2706, 2846
Esp3I CGTCTC 1 cut(s) 2356
FalI AAGNNNNNCTT 2 cut(s) 1776, 1808
FaqI GGGAC 4 cut(s) 525, 3173, 4193, 5000
FauI CCCGC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 3049
FbaI TGATCA 4 cut(s) 1051, 2899, 3481, 4486
FblI GTMKAC 3 cut(s) 2118, 2210, 2712
FokI GGATG 9 cut(s) 119, 330, 830, 1326, 1892, 2011, 3370, 3461, 4873
FriOI GRGCYC 7 cut(s) 9, 69, 99, 165, 348, 1663, 4138
GlaI GCGC 3 cut(s) 16, 21, 1653
GsaI CCCAGC 2 cut(s) 790, 1013
GsuI CTGGAG 1 cut(s) 1601
HaeII RGCGCY 1 cut(s) 23
HapII CCGG 4 cut(s) 1865, 3155, 3251, 4211
HgaI GACGC 4 cut(s) 311, 1067, 1970, 2969
HhaI GCGC 3 cut(s) 17, 22, 1654
Hin1I GRCGYC 2 cut(s) 322, 2980
Hin6I GCGC 3 cut(s) 15, 20, 1652
HinP1I GCGC 3 cut(s) 15, 20, 1652
HincII GTYRAC 3 cut(s) 1234, 2630, 3472
HindII GTYRAC 3 cut(s) 1234, 2630, 3472
HindIII AAGCTT 6 cut(s) 367, 426, 773, 1638, 2199, 3258
HpaI GTTAAC 1 cut(s) 1234
HpaII CCGG 4 cut(s) 1865, 3155, 3251, 4211
Hpy99I CGWCG 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 322, 2980
HspAI GCGC 3 cut(s) 15, 20, 1652
Ksp22I TGATCA 4 cut(s) 1051, 2899, 3481, 4486
KspAI GTTAAC 1 cut(s) 1234
KspI CCGCGG 1 cut(s) 42
LguI GCTCTTC 3 cut(s) 266, 1668, 3351
LmnI GCTCC 7 cut(s) 4, 64, 72, 691, 2428, 4153, 4564
Lsp1109I GCAGC 6 cut(s) 29, 2863, 3700, 4052, 4516, 5035
MabI ACCWGGT 1 cut(s) 850
MfeI CAATTG 2 cut(s) 1031, 2986
MflI RGATCY 4 cut(s) 641, 1111, 1352, 2433
MhlI GDGCHC 9 cut(s) 9, 69, 99, 165, 337, 348, 1663, 3367, 4138
MlsI TGGCCA 2 cut(s) 2797, 4198
MluNI TGGCCA 2 cut(s) 2797, 4198
MlyI GAGTC 4 cut(s) 44, 937, 1097, 3696
MmeI TCCRAC 8 cut(s) 1106, 1394, 1779, 1926, 2908, 3179, 3404, 4914
Mox20I TGGCCA 2 cut(s) 2797, 4198
Mph1103I ATGCAT 3 cut(s) 3662, 4226, 4573
MroXI GAANNNNTTC 4 cut(s) 179, 2088, 2446, 3095
MscI TGGCCA 2 cut(s) 2797, 4198
Msp20I TGGCCA 2 cut(s) 2797, 4198
MspA1I CMGCKG 3 cut(s) 41, 930, 4735
MspCI CTTAAG 4 cut(s) 734, 776, 3019, 4027
MspI CCGG 4 cut(s) 1865, 3155, 3251, 4211
MspR9I CCNGG 9 cut(s) 315, 852, 1238, 1350, 2977, 3284, 4152, 4211, 4212
MteI GCGCNGCGC 1 cut(s) 18
MunI CAATTG 2 cut(s) 1031, 2986
Mva1269I GAATGC 8 cut(s) 466, 829, 1681, 2111, 2446, 3043, 3086, 4748
MvaI CCWGG 7 cut(s) 315, 852, 1238, 1350, 2977, 3284, 4152
MvnI CGCG 1 cut(s) 41
NciI CCSGG 2 cut(s) 4211, 4212
NcoI CCATGG 2 cut(s) 187, 2706
NdeI CATATG 1 cut(s) 3049
NheI GCTAGC 1 cut(s) 4979
NlaIV GGNNCC 8 cut(s) 6, 163, 345, 346, 1354, 2424, 3189, 4136
NmeAIII GCCGAG 1 cut(s) 925
NmuCI GTSAC 5 cut(s) 1400, 2516, 2981, 3533, 4942
NsiI ATGCAT 3 cut(s) 3662, 4226, 4573
NspV TTCGAA 2 cut(s) 2076, 4330
OliI CACNNNNGTG 1 cut(s) 5195
PaeI GCATGC 2 cut(s) 3611, 4571
PaeR7I CTCGAG 3 cut(s) 453, 645, 4511
PagI TCATGA 1 cut(s) 3778
PciI ACATGT 2 cut(s) 1126, 3453
PciSI GCTCTTC 3 cut(s) 266, 1668, 3351
PcsI WCGNNNNNNNCGW 1 cut(s) 3180
PctI GAATGC 8 cut(s) 466, 829, 1681, 2111, 2446, 3043, 3086, 4748
PdmI GAANNNNTTC 4 cut(s) 179, 2088, 2446, 3095
PflMI CCANNNNNTGG 1 cut(s) 1349
PinAI ACCGGT 1 cut(s) 3154
PleI GAGTC 4 cut(s) 43, 937, 1096, 3696
PmaCI CACGTG 2 cut(s) 332, 3362
PmlI CACGTG 2 cut(s) 332, 3362
PpsI GAGTC 4 cut(s) 43, 937, 1096, 3696
Ppu21I YACGTR 2 cut(s) 332, 3362
PpuMI RGGWCCY 1 cut(s) 3187
PscI ACATGT 2 cut(s) 1126, 3453
PshAI GACNNNNGTC 1 cut(s) 2625
PsiI TTATAA 1 cut(s) 5103
Psp124BI GAGCTC 2 cut(s) 69, 99
Psp1406I AACGTT 3 cut(s) 1512, 2936, 4645
Psp5II RGGWCCY 1 cut(s) 3187
Psp6I CCWGG 7 cut(s) 313, 850, 1236, 1348, 2975, 3282, 4150
PspCI CACGTG 2 cut(s) 332, 3362
PspEI GGTNACC 3 cut(s) 1400, 2516, 3544
PspFI CCCAGC 2 cut(s) 786, 1009
PspGI CCWGG 7 cut(s) 313, 850, 1236, 1348, 2975, 3282, 4150
PspN4I GGNNCC 8 cut(s) 6, 163, 345, 346, 1354, 2424, 3189, 4136
PspOMI GGGCCC 3 cut(s) 161, 344, 4134
PspPPI RGGWCCY 1 cut(s) 3187
PspXI VCTCGAGB 1 cut(s) 453
PsrI GAACNNNNNNTAC 4 cut(s) 2632, 2664, 4773, 4805
PstI CTGCAG 3 cut(s) 3855, 4407, 5053
PstNI CAGNNNCTG 1 cut(s) 1349
PsuI RGATCY 4 cut(s) 641, 1111, 1352, 2433
PvuII CAGCTG 1 cut(s) 4735
SacI GAGCTC 2 cut(s) 69, 99
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 3 cut(s) 266, 1668, 3351
ScaI AGTACT 2 cut(s) 3025, 3849
SchI GAGTC 4 cut(s) 44, 937, 1097, 3696
ScrFI CCNGG 9 cut(s) 315, 852, 1238, 1350, 2977, 3284, 4152, 4211, 4212
SduI GDGCHC 9 cut(s) 9, 69, 99, 165, 337, 348, 1663, 3367, 4138
SexAI ACCWGGT 1 cut(s) 850
Sfr274I CTCGAG 3 cut(s) 453, 645, 4511
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 2 cut(s) 2076, 4330
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 6 cut(s) 848, 1867, 2774, 3152, 3187, 4808
SlaI CTCGAG 3 cut(s) 453, 645, 4511
SmaI CCCGGG 1 cut(s) 4212
SphI GCATGC 2 cut(s) 3611, 4571
SspI AATATT 3 cut(s) 2656, 3724, 4544
SstI GAGCTC 2 cut(s) 69, 99
StyD4I CCNGG 9 cut(s) 313, 850, 1236, 1348, 2975, 3282, 4150, 4209, 4210
StyI CCWWGG 3 cut(s) 187, 2706, 2846
TaqII GACCGA 1 cut(s) 3552
TatI WGTACW 5 cut(s) 858, 863, 1967, 3023, 3847
TauI GCSGC 6 cut(s) 44, 1338, 1864, 3180, 3529, 3579
TseFI GTSAC 5 cut(s) 1400, 2516, 2981, 3533, 4942
TseI GCWGC 6 cut(s) 17, 2851, 3713, 4040, 4529, 5048
Tsp45I GTSAC 5 cut(s) 1400, 2516, 2981, 3533, 4942
TspGWI ACGGA 6 cut(s) 584, 1718, 2352, 3082, 3376, 4661
TspMI CCCGGG 1 cut(s) 4210
Van91I CCANNNNNTGG 1 cut(s) 1349
Vha464I CTTAAG 4 cut(s) 734, 776, 3019, 4027
VpaK11BI GGWCC 6 cut(s) 848, 1867, 2774, 3152, 3187, 4808
XagI CCTNNNNNAGG 1 cut(s) 3287
XapI RAATTY 7 cut(s) 179, 655, 1831, 2470, 3693, 4215, 4783
XbaI TCTAGA 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 2 cut(s) 1346, 5034
XhoI CTCGAG 3 cut(s) 453, 645, 4511
XmaI CCCGGG 1 cut(s) 4210
XmiI GTMKAC 3 cut(s) 2118, 2210, 2712
XmnI GAANNNNTTC 4 cut(s) 179, 2088, 2446, 3095
ZrmI AGTACT 2 cut(s) 3025, 3849
Zsp2I ATGCAT 3 cut(s) 3662, 4226, 4573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.