Rh1DG329300

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003732
Physical Location & Seq
Reverse (-)
55426231 .. 55434479
8249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG329300.1

Sequence Viewer

Length: 5133 bp
ATGGAGCCCGACGGCGCAGCGCCGATGCAAGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCCGATGATAATGACGAAAATCCTGTTTTCTCGGTTGCACGTTCCACTGGTACTCCCGGGCCCATGCTGGTTCCACCAGTGAACAAATTCACCCATGGGAATCAAGCGGGGAAGGCTGTATCTCCTGCAAGCTCTACTGATATTCAGTGCCAAACCTCCAAGCAACCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCGTTAAAACCTGCTACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGATGATGACAGTCAGAGTGATTCTGAAGAAAAGGAGCGTGGGAAACTAAAAGCTTCACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTTATGCCCAAAAAGTTGTCTATGAATCGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCATGAACAAAAATATAGTGAACAGAGAGCGTGGATATGAACTTCAAGACTTGCGACAGCAGATTGCACTTAAGGAGACTGAACTGAAGCTCAAGGAAAGTGAACTGAAGCTTAAGTCTGCCCAGCGAACTAAGGAATCAGTTACATGCAAGGATGAGAATGCTAAGGGCCTGCACAGAGATGGAGCTGGTAAGTACAGTACAGGATATTCTGATGGTATGCAGACAGAACCAAAAGAGCCAGATAAAAAGCGTATAAAAGTCAGCGGTGCTTTTTCAACTCAGCTAACTGCACTAAGCCCACAAGAATTACCTGTTGCAAAACCTTTATTACCATCAAAAACCCCAGCAATGGAGGACAATACTCAATTGAACACCAGTAAGATTGATTATCTCCAAAAAGAAAATCAAGTGCGTCCAACAGAGTCGAGCATTGTAAAATGGCAAGATCCTAATGATAAACATGTTGCTGGAATGTTGGGAAATATACATACTGGACTGAAAGATGGTGCTGGCATCAATGCTAGATATATCCAGTCTGATGGGAGGGGTAAGCAGATGGATTCTGTTGTTACACCAAACCAGGGTAAATCACTGGCAAATATGACGTGCATTGATTTTCCAAATAACTTGAATAGTGTGGAGTTGAATCATACAAATACTAACACAAACACAAATAGCGGCCATCCAGAACCTGGATCCTTCTTAAACAATCCAACATCAGGAAAGAATTTAATGGGAAGTGGTGACCATCAGGAAACCATATCCATTGACAAGAGACTTGAGCCCTCATTCTACAGTAAATGTCAGGCACTCCTAAACAACACAAACCTCTCGAACTGTTTTGGTAATGCAAACGTTATAGGAGATGACAACATGAAGATGCAGTCATTGGTTCAAATGGAGGAAATGCTAGACAAGAATCTGGAGGAAGCACAAGAGCATAGGCGAAGGTGTGAAATTGAAGAACAAAATGCTCTTAAAGCTTATCGTAAAGCGCAGAGGGCTCTTCTTGAGGCGAATGCTACGTGTGATGTTCTTTATCGGAAAAGGGAACTATATTCTGCCGACTTCCGTGCTTATGTTATTAACAATCCCAGTTTGTTATGTTCCTCAAGGCAGAACGAACAAGCTGGACTTGGGTTGGATCACCCTAATAACTTGTCTGAAAATGTGAATTTGATACCCACGTCAAGCCATCAGATGCCGCCGGTCCAGAATGACTGCAATCTAGCGGTTATTGATTCCAACATCCAATGCGTTAACAGCGCTCAGATCCCGAATCCCTACCAGCATTTGAGTGGAGAAAACATTGGCTCAGAACCAGGCAGTGAACCTGACGCTAGTACATCTGAGCCAGTGCCTCTTCTGGGCAATACTGGCACAGATGGAGTTTGCTCTCCATCCAATGAACCAAATGGTTCAGCAAATGAAGATGATGATACATTTTCATTCGAAAATGAATCTGTTCAACCCAATGGTGAATGCCATCTTGTAGACAAACAAAAGGAGACAGATAATGAATCAAATAGGATAATGTCTATTGACCCCAACGAGGAATCTTTACTTCTCGAAAAAGCTTTGAGGTCTACACTATTTGCAAAGCTAGGAACAAAAAATGTGTCGAAGAACAGTGTTGTATGTAATGGCACAGGGATTGCAGTGGAACGAGAGGCTGAAAATGATGCAAGAAGTGAAGAACCACAAAAAGTAAACGGGAGTTCTCCCGTCTCAGAGGTGGAGAAAAATCAACAATCTGATATTGAAGGCGTTGATGTGCATGAAAAAAAGACAGATGTTCCTTTGGAGGTTATAGACCCAAACAATGTGATGGAACATCAGGACAGAAGTCAACAGAGTGGAGCTCGTGATACTAATATTGAAGAAGGTGCTTGTATAAACTCTGGTAAAGTGCAGTTTAGCAGTACCATGGTAGACACAACGAAAAAGGCTCTGGTGAAATTATGTGATAGAGAATATGGCTCTTATACCACTGGTCCTGCTGTTGATCCCTTTTGGCCACTTTGCATGTATGAGCTACGAGGAAAATGCAACAATGATGAGTGTCCTTGGCAGCATGTTAAGGACTACTCTACCACCGATATGTCTCCACATCAGCATGATAATTCTGAAATTGCTGGTTGTCAGGTTGGACAAACGTTTTGCAAAGAAAAGTGTGATGGTTCAGCAAAAGTTCCCTGGCGTCACAATTTTACGACTTTACCAACTTACCTTGTTGGCTTAAGTACTCTAAAAGCTGATCTGCATTCATATGATTCTGTTCTAGCACGGAGAAATGGTGAATGCTGGAAGAAGTGTTTCAGCCTTTTCTTAGCATTGTCAAAGTCGTTTCAAAAAGATTTTCCTACAGATGGGCCAGTCTCGCATGGAAATGACGGCCGCATCGAGGTCCCTGTGAGTTGGAACAGACAGTCATCATATTTCCAGAGTAGAAATAGCGGAGTGAATCAACCGGATCAAGCTTTGGCTGACAATGAGCAATACCTGGAAAAGGCTCTTTTAATTTTCAGTCAAGAGGTCAATACACTTGAGGGTATGAAAAAGGCTCTTCCTGTATTGTCACGTGCTCTTGAGGCTGATCCAACATCCGTAGTTCTCTGGGTCTTTTATCTGCTTATTTACTATAGCAATATGAAGTCAGTAGGGAAGGATGACATGTTCTCTTGTGCGGTCAACTACAATGATCAATCTTATGAACTTTGGATTATGTTCATCAACAGTCGGGTGCGGCTAAGTGACCGATTGGTTACCTACGATCTTGCCTTCTCAGCACTGTGCCCCCGCCATGCTTCTTCTGCCAAAGATAAAGTGCATGCTAGTGCTTGTATCTTAGACTTAGTTTTGCAAATGGTGGATTGTCTATGCATGTCTGGGAATGTTGAGAGGGCCATTCAGAAAATTTGTGGACTCTTCTCTGCTGCCACAAATATTTATGACCCCGATTCTCCATTGCTTACTGATATGCCCAAATGCCTAACAAGTCATGACAAATGTATTTTGGGGGTATGTTGTGTTTACTTGGTTATCTATAGGAAACTTCCTGATGCTGTAGTACTGCAGTTTGAATGTCAGAAAGAACTGTTTGCAATAGAATGGCCTTCTATTGAATTAACAGATAATGAAAAGCAGAGGGCTGTCAAACTGATGGAAGCAGTAGAAGATTCTGTATGTCAATCGCTGGATAAAAGTGATTTTAATCTCAGTTTGGCACATTTTTTTGCTCTGAGCCACTTAAGGTGCATGGCAGCTATTGACAGCTTAGAAAGGTGTAGTAATCTTCTGGGTAAATATCTTAAAATGTTCCCGTCCTGCCTAGAGCTTGTTCTAATATCGGCAAGGGCCCAAAAACATGCTCCTGGTGATTCGCTTTTTGACGGGTTTGAGGAAGCCCTAAATAATTGGCCAAAAGAAGTCCCCGGAATTCAATGCATCTGGAATCAGTATGTTGTATATGCCTTTCAGAAAGGACAATTTGATTTTGGTAAAGAACTTATAGGCCGTTGGTTTCATTCTTTTTGGCAAGTTCATTGTATTCGAAATGGTACATTAGATGACATGGAGTGTGATAACTCAGATGGCTCACTAGGATTGGCTTCGGATTCAGTTCTGCAGACACTTAATACTGATTCTAAGCAGATGGACGTAATGTTTGGATATCTTAATCTCTCGCTGTATAAGTTAATCCAAAATGATCAGATTGAAGCTCGCTTAGCCCTCGAGAGGGCATTGAAGGCTGCTGTTCCAGAATATTCAAAGCATTGCATGAGGGAGCATGCATTATTTATGCTAAGTGAGGAATCAGGATTTAAGGAGAGTGGTTGTCCTAGTGGCATGGAGAAGATTTTGAAACGTTACATAGGTGATGCCGAAGTTTTCCCTTCATCTGAGCCATTATCTAGGCAGTTTATTGCTGACATCAAGAAGCCAAGAGTACGACAGCTGGTTAGTAGCGAATTCAGTCCATTCTCATCTGATTTTGCTCTTGTAAATTCAGTTCTTGAAGTGTTGTATGGACCATCTCTTTTACCGAAAAAGACTGGTGAGACAAAATGTCTGGTGGATTTTGTTGAAGCCATCTTGGATATAACTCCATCCAACTATCAGTTAGCTATTTCTGTCTGTAAGCTGTTAATTACTGGCAACAATGCAACTGATATTACTTCAGTCAGTGTTTTGTTCTGGGCTAGCTCAAACTTGGTCAGTGCAATCTTTCGTGCTGTCCCAATTCCGCCAGAGTATGTATGGGTAGAAGCTGCAGACATATTGGGCAATATGGTGAATGTTGAGGTTATTTCTGAGAGGTTTTATAAGAGAGCTTTATCTGTATATCCTTTCTCTGTCAAGTTGTGGAAATCCTATTACATGCTTTCTATGATGACTACAGGAAATATGAACACTGTTGTGGAAACAGCAAAGGAAAAAGGTATAGAACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

1710

Amino Acids

189.55

Weight (kDa)

5.4

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3H1 PF10650 899 - 919 1.4e-09 Putative zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 5001
Acc36I ACCTGC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 1367
AccI GTMKAC 3 cut(s) 2169, 2261, 2607
AccII CGCG 1 cut(s) 41
AclI AACGTT 3 cut(s) 1530, 2831, 4543
AclWI GGATC 9 cut(s) 658, 1115, 1365, 1378, 1827, 1942, 2675, 3156, 3266
AcoI YGGCCR 4 cut(s) 1354, 2690, 3070, 4094
AcsI RAATTY 8 cut(s) 188, 664, 1402, 1849, 3591, 4113, 4646, 4681
AcuI CTGAAG 4 cut(s) 429, 779, 800, 4839
AcvI CACGTG 2 cut(s) 341, 3257
AcyI GRCGYC 2 cut(s) 331, 2875
AfeI AGCGCT 1 cut(s) 1942
AflII CTTAAG 4 cut(s) 743, 785, 2914, 3925
AflIII ACRYGT 3 cut(s) 1135, 1700, 3348
AhdI GACNNNNNGTC 1 cut(s) 4743
AjiI CACGTC 2 cut(s) 1281, 1863
AjnI CCWGG 7 cut(s) 322, 1254, 1366, 1996, 2870, 3177, 4048
AleI CACNNNNGTG 1 cut(s) 5093
AloI GAACNNNNNNTCC 2 cut(s) 3335, 3367
Alw21I GWGCWC 4 cut(s) 69, 99, 2539, 3262
Alw26I GTCTC 7 cut(s) 743, 1444, 2177, 2407, 2784, 3058, 4730
AlwI GGATC 9 cut(s) 658, 1115, 1365, 1378, 1827, 1942, 2675, 3156, 3266
AlwNI CAGNNNCTG 1 cut(s) 1367
Ama87I CYCGRG 5 cut(s) 158, 349, 462, 654, 4409
Aor51HI AGCGCT 1 cut(s) 1942
ApaI GGGCCC 3 cut(s) 165, 357, 4036
ApeKI GCWGC 6 cut(s) 17, 2746, 3611, 3938, 4427, 4946
ApoI RAATTY 8 cut(s) 188, 664, 1402, 1849, 3591, 4113, 4646, 4681
ArsI GACNNNNNNTTYG 6 cut(s) 2279, 2311, 2817, 2849, 4325, 4357
Asp700I GAANNNNTTC 3 cut(s) 188, 2139, 2990
AspLEI GCGC 4 cut(s) 17, 22, 1672, 1943
AsuC2I CCSGG 3 cut(s) 159, 160, 4110
AsuII TTCGAA 2 cut(s) 2127, 4228
AsuNHI GCTAGC 1 cut(s) 4877
AvaI CYCGRG 5 cut(s) 158, 349, 462, 654, 4409
AvaII GGWCC 4 cut(s) 1885, 2669, 3082, 4706
BaeGI GKGCMC 5 cut(s) 165, 346, 357, 3473, 4036
BaeI ACNNNNGTAYC 2 cut(s) 1847, 1880
BalI TGGCCA 2 cut(s) 2692, 4096
BamHI GGATCC 1 cut(s) 1370
BanII GRGCYC 9 cut(s) 9, 69, 99, 165, 357, 1461, 1681, 2539, 4036
BauI CACGAG 1 cut(s) 2538
BbrPI CACGTG 2 cut(s) 341, 3257
Bbv12I GWGCWC 4 cut(s) 69, 99, 2539, 3262
BbvI GCAGC 6 cut(s) 29, 2758, 3598, 3950, 4414, 4933
BceAI ACGGC 3 cut(s) 28, 3085, 4176
BcgI CGANNNNNNTGC 6 cut(s) 635, 669, 1730, 1764, 2703, 2737
BciT130I CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2872, 3179, 4050
BclI TGATCA 2 cut(s) 3376, 4384
BcnI CCSGG 3 cut(s) 159, 160, 4110
BcoDI GTCTC 7 cut(s) 743, 1444, 2177, 2407, 2784, 3058, 4730
BfmI CTRYAG 9 cut(s) 1468, 3039, 3316, 3721, 3741, 3749, 4301, 4947, 5073
BfoI RGCGCY 2 cut(s) 23, 1944
BfrI CTTAAG 4 cut(s) 743, 785, 2914, 3925
BfuAI ACCTGC 1 cut(s) 322
BlpI GCTNAGC 1 cut(s) 4402
BmcAI AGTACT 2 cut(s) 2920, 3747
Bme18I GGWCC 4 cut(s) 1885, 2669, 3082, 4706
BmeRI GACNNNNNGTC 1 cut(s) 4743
BmeT110I CYCGRG 5 cut(s) 158, 349, 462, 654, 4409
BmgBI CACGTC 2 cut(s) 1281, 1863
BmiI GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1372, 3084, 4034
BmrI ACTGGG 1 cut(s) 1764
BmtI GCTAGC 1 cut(s) 4881
BmuI ACTGGG 1 cut(s) 1764
BoxI GACNNNNGTC 1 cut(s) 2520
BplI GAGNNNNNCTC 2 cut(s) 2521, 2553
BpmI CTGGAG 1 cut(s) 1619
Bpu10I CCTNAGC 1 cut(s) 837
Bpu1102I GCTNAGC 1 cut(s) 4402
Bpu14I TTCGAA 2 cut(s) 2127, 4228
BpuEI CTTGAG 6 cut(s) 749, 1475, 1706, 1771, 3242, 3284
BpuMI CCSGG 3 cut(s) 159, 160, 4110
BsaAI YACGTR 3 cut(s) 341, 1701, 3257
BsaBI GATNNNNATC 1 cut(s) 3888
BsaHI GRCGYC 2 cut(s) 331, 2875
BsaJI CCNNGG 9 cut(s) 39, 158, 196, 604, 1255, 2601, 2741, 2870, 4108
BsaWI WCCGGW 1 cut(s) 3145
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 2956, 2986
Bse118I RCCGGY 1 cut(s) 1882
Bse3DI GCAATG 4 cut(s) 292, 1029, 3641, 4450
Bse8I GATNNNNATC 1 cut(s) 3888
BseBI CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2872, 3179, 4050
BseDI CCNNGG 9 cut(s) 39, 158, 196, 604, 1255, 2601, 2741, 2870, 4108
BseGI GGATG 8 cut(s) 332, 832, 1357, 1923, 2075, 3278, 3349, 4784
BseJI GATNNNNATC 1 cut(s) 3888
BseMI GCAATG 4 cut(s) 292, 1029, 3641, 4450
BseSI GKGCMC 5 cut(s) 165, 346, 357, 3473, 4036
BseX3I CGGCCG 1 cut(s) 3070
BseXI GCAGC 6 cut(s) 29, 2758, 3598, 3950, 4414, 4933
BseYI CCCAGC 2 cut(s) 795, 1018
BsgI GTGCAG 3 cut(s) 830, 948, 2606
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 3073
BsiEI CGRYCG 1 cut(s) 3073
BsiHKAI GWGCWC 4 cut(s) 69, 99, 2539, 3262
BsiHKCI CYCGRG 5 cut(s) 158, 349, 462, 654, 4409
BsiSI CCGG 4 cut(s) 159, 1883, 3146, 4110
BslFI GGGAC 4 cut(s) 534, 3068, 4091, 4898
BsmAI GTCTC 7 cut(s) 743, 1444, 2177, 2407, 2784, 3058, 4730
BsmBI CGTCTC 1 cut(s) 2407
BsmFI GGGAC 4 cut(s) 534, 3068, 4091, 4898
BsmI GAATGC 6 cut(s) 475, 838, 1699, 2162, 2938, 2981
BsoBI CYCGRG 5 cut(s) 158, 349, 462, 654, 4409
Bsp119I TTCGAA 2 cut(s) 2127, 4228
Bsp120I GGGCCC 3 cut(s) 161, 353, 4032
Bsp1720I GCTNAGC 1 cut(s) 4402
Bsp19I CCATGG 2 cut(s) 196, 2601
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 3676
BspLI GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1372, 3084, 4034
BspMAI CTGCAG 3 cut(s) 3753, 4305, 4951
BspMI ACCTGC 1 cut(s) 322
BspOI GCTAGC 1 cut(s) 4881
BspPI GGATC 9 cut(s) 658, 1115, 1365, 1378, 1827, 1942, 2675, 3156, 3266
BspQI GCTCTTC 3 cut(s) 275, 1686, 3246
BspT104I TTCGAA 2 cut(s) 2127, 4228
BspTI CTTAAG 4 cut(s) 743, 785, 2914, 3925
BsrDI GCAATG 4 cut(s) 292, 1029, 3641, 4450
BsrFI RCCGGY 1 cut(s) 1882
BssAI RCCGGY 1 cut(s) 1882
BssECI CCNNGG 9 cut(s) 39, 158, 196, 604, 1255, 2601, 2741, 2870, 4108
BssNI GRCGYC 2 cut(s) 331, 2875
BssSI CACGAG 1 cut(s) 2538
BssT1I CCWWGG 3 cut(s) 196, 2601, 2741
Bst2BI CACGAG 1 cut(s) 2538
Bst2UI CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2872, 3179, 4050
Bst6I CTCTTC 6 cut(s) 106, 275, 1686, 2043, 3246, 3608
BstACI GRCGYC 2 cut(s) 331, 2875
BstAFI CTTAAG 4 cut(s) 743, 785, 2914, 3925
BstBAI YACGTR 3 cut(s) 341, 1701, 3257
BstBI TTCGAA 2 cut(s) 2127, 4228
BstC8I GCNNGC 9 cut(s) 95, 232, 528, 845, 1186, 3507, 4399, 4467, 4879
BstDSI CCRYGG 4 cut(s) 39, 196, 604, 2601
BstEII GGTNACC 2 cut(s) 1418, 3439
BstENI CCTNNNNNAGG 1 cut(s) 3182
BstF5I GGATG 8 cut(s) 332, 832, 1357, 1923, 2075, 3278, 3349, 4784
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 2 cut(s) 23, 1944
BstHHI GCGC 4 cut(s) 17, 22, 1672, 1943
BstMAI GTCTC 7 cut(s) 743, 1444, 2177, 2407, 2784, 3058, 4730
BstMCI CGRYCG 1 cut(s) 3073
BstNI CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2872, 3179, 4050
BstPAI GACNNNNGTC 1 cut(s) 2520
BstPI GGTNACC 2 cut(s) 1418, 3439
BstSFI CTRYAG 9 cut(s) 1468, 3039, 3316, 3721, 3741, 3749, 4301, 4947, 5073
BstSLI GKGCMC 5 cut(s) 165, 346, 357, 3473, 4036
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 6 cut(s) 29, 2758, 3598, 3950, 4414, 4933
BstX2I RGATCY 4 cut(s) 650, 1120, 1370, 1947
BstXI CCANNNNNNTGG 1 cut(s) 1214
BstYI RGATCY 4 cut(s) 650, 1120, 1370, 1947
BstZI CGGCCG 1 cut(s) 3070
BtgI CCRYGG 4 cut(s) 39, 196, 604, 2601
BtrI CACGTC 2 cut(s) 1281, 1863
BtsCI GGATG 8 cut(s) 332, 832, 1357, 1923, 2075, 3278, 3349, 4784
BtsI GCAGTG 2 cut(s) 2008, 2340
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 9 cut(s) 95, 232, 528, 845, 1186, 3507, 4399, 4467, 4879
CaiI CAGNNNCTG 1 cut(s) 1367
CciI TCATGA 1 cut(s) 3676
CfoI GCGC 4 cut(s) 17, 22, 1672, 1943
Cfr10I RCCGGY 1 cut(s) 1882
Cfr42I CCGCGG 1 cut(s) 42
Cfr9I CCCGGG 1 cut(s) 158
CseI GACGC 4 cut(s) 320, 1076, 2021, 2864
DriI GACNNNNNGTC 1 cut(s) 4743
EaeI YGGCCR 4 cut(s) 1354, 2690, 3070, 4094
EagI CGGCCG 1 cut(s) 3070
Eam1104I CTCTTC 6 cut(s) 106, 275, 1686, 2043, 3246, 3608
Eam1105I GACNNNNNGTC 1 cut(s) 4743
EarI CTCTTC 6 cut(s) 106, 275, 1686, 2043, 3246, 3608
EciI GGCGGA 2 cut(s) 59, 4911
Ecl136II GAGCTC 3 cut(s) 67, 97, 2537
EclXI CGGCCG 1 cut(s) 3070
Eco130I CCWWGG 3 cut(s) 196, 2601, 2741
Eco24I GRGCYC 9 cut(s) 9, 69, 99, 165, 357, 1461, 1681, 2539, 4036
Eco32I GATATC 1 cut(s) 4349
Eco47I GGWCC 4 cut(s) 1885, 2669, 3082, 4706
Eco47III AGCGCT 1 cut(s) 1942
Eco52I CGGCCG 1 cut(s) 3070
Eco53kI GAGCTC 3 cut(s) 67, 97, 2537
Eco57I CTGAAG 4 cut(s) 429, 779, 800, 4839
Eco72I CACGTG 2 cut(s) 341, 3257
Eco88I CYCGRG 5 cut(s) 158, 349, 462, 654, 4409
Eco91I GGTNACC 2 cut(s) 1418, 3439
EcoICRI GAGCTC 3 cut(s) 67, 97, 2537
EcoNI CCTNNNNNAGG 1 cut(s) 3182
EcoO109I RGGNCCY 4 cut(s) 353, 841, 3082, 4032
EcoO65I GGTNACC 2 cut(s) 1418, 3439
EcoRI GAATTC 2 cut(s) 4113, 4646
EcoRII CCWGG 7 cut(s) 322, 1254, 1366, 1996, 2870, 3177, 4048
EcoRV GATATC 1 cut(s) 4349
EcoT14I CCWWGG 3 cut(s) 196, 2601, 2741
EcoT22I ATGCAT 3 cut(s) 3560, 4124, 4471
EcoT38I GRGCYC 9 cut(s) 9, 69, 99, 165, 357, 1461, 1681, 2539, 4036
ErhI CCWWGG 3 cut(s) 196, 2601, 2741
Esp3I CGTCTC 1 cut(s) 2407
FalI AAGNNNNNCTT 2 cut(s) 1794, 1826
FaqI GGGAC 4 cut(s) 534, 3068, 4091, 4898
FauI CCCGC 2 cut(s) 202, 3482
FauNDI CATATG 1 cut(s) 2944
FbaI TGATCA 2 cut(s) 3376, 4384
FblI GTMKAC 3 cut(s) 2169, 2261, 2607
FokI GGATG 8 cut(s) 339, 839, 1344, 1910, 2062, 3265, 3356, 4771
FriOI GRGCYC 9 cut(s) 9, 69, 99, 165, 357, 1461, 1681, 2539, 4036
GlaI GCGC 4 cut(s) 16, 21, 1671, 1942
GsaI CCCAGC 2 cut(s) 799, 1022
GsuI CTGGAG 1 cut(s) 1619
HaeII RGCGCY 2 cut(s) 23, 1944
HapII CCGG 4 cut(s) 159, 1883, 3146, 4110
HgaI GACGC 4 cut(s) 320, 1076, 2021, 2864
HhaI GCGC 4 cut(s) 17, 22, 1672, 1943
Hin1I GRCGYC 2 cut(s) 331, 2875
Hin6I GCGC 4 cut(s) 15, 20, 1670, 1941
HinP1I GCGC 4 cut(s) 15, 20, 1670, 1941
HincII GTYRAC 3 cut(s) 1936, 2525, 3367
HindII GTYRAC 3 cut(s) 1936, 2525, 3367
HindIII AAGCTT 6 cut(s) 376, 435, 782, 1656, 2250, 3153
HpaI GTTAAC 1 cut(s) 1936
HpaII CCGG 4 cut(s) 159, 1883, 3146, 4110
Hpy99I CGWCG 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 331, 2875
HspAI GCGC 4 cut(s) 15, 20, 1670, 1941
Ksp22I TGATCA 2 cut(s) 3376, 4384
KspAI GTTAAC 1 cut(s) 1936
KspI CCGCGG 1 cut(s) 42
LguI GCTCTTC 3 cut(s) 275, 1686, 3246
LmnI GCTCC 8 cut(s) 4, 64, 72, 418, 857, 2534, 4051, 4462
Lsp1109I GCAGC 6 cut(s) 29, 2758, 3598, 3950, 4414, 4933
MaeIII GTNAC 8 cut(s) 814, 1243, 1418, 2876, 3252, 3428, 3439, 4544
MfeI CAATTG 1 cut(s) 1040
MflI RGATCY 4 cut(s) 650, 1120, 1370, 1947
MlsI TGGCCA 2 cut(s) 2692, 4096
MluNI TGGCCA 2 cut(s) 2692, 4096
MlyI GAGTC 3 cut(s) 44, 1106, 3594
MmeI TCCRAC 8 cut(s) 1115, 1412, 1797, 1944, 2803, 3074, 3299, 4812
Mox20I TGGCCA 2 cut(s) 2692, 4096
Mph1103I ATGCAT 3 cut(s) 3560, 4124, 4471
MroXI GAANNNNTTC 3 cut(s) 188, 2139, 2990
MscI TGGCCA 2 cut(s) 2692, 4096
Msp20I TGGCCA 2 cut(s) 2692, 4096
MspA1I CMGCKG 3 cut(s) 41, 939, 4633
MspCI CTTAAG 4 cut(s) 743, 785, 2914, 3925
MspI CCGG 4 cut(s) 159, 1883, 3146, 4110
MteI GCGCNGCGC 1 cut(s) 18
MunI CAATTG 1 cut(s) 1040
Mva1269I GAATGC 6 cut(s) 475, 838, 1699, 2162, 2938, 2981
MvaI CCWGG 7 cut(s) 324, 1256, 1368, 1998, 2872, 3179, 4050
MvnI CGCG 1 cut(s) 41
NciI CCSGG 3 cut(s) 159, 160, 4110
NcoI CCATGG 2 cut(s) 196, 2601
NdeI CATATG 1 cut(s) 2944
NheI GCTAGC 1 cut(s) 4877
NlaIV GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1372, 3084, 4034
NmuCI GTSAC 4 cut(s) 1418, 2876, 3252, 3428
NsiI ATGCAT 3 cut(s) 3560, 4124, 4471
NspV TTCGAA 2 cut(s) 2127, 4228
OliI CACNNNNGTG 1 cut(s) 5093
PaeI GCATGC 2 cut(s) 3509, 4469
PaeR7I CTCGAG 3 cut(s) 462, 654, 4409
PagI TCATGA 1 cut(s) 3676
PciI ACATGT 2 cut(s) 1135, 3348
PciSI GCTCTTC 3 cut(s) 275, 1686, 3246
PcsI WCGNNNNNNNCGW 1 cut(s) 3075
PctI GAATGC 6 cut(s) 475, 838, 1699, 2162, 2938, 2981
PdmI GAANNNNTTC 3 cut(s) 188, 2139, 2990
PflMI CCANNNNNTGG 1 cut(s) 1367
PleI GAGTC 3 cut(s) 43, 1105, 3594
PmaCI CACGTG 2 cut(s) 341, 3257
PmlI CACGTG 2 cut(s) 341, 3257
PpsI GAGTC 3 cut(s) 43, 1105, 3594
Ppu21I YACGTR 3 cut(s) 341, 1701, 3257
PpuMI RGGWCCY 1 cut(s) 3082
PscI ACATGT 2 cut(s) 1135, 3348
PshAI GACNNNNGTC 1 cut(s) 2520
PsiI TTATAA 1 cut(s) 5001
Psp124BI GAGCTC 3 cut(s) 69, 99, 2539
Psp1406I AACGTT 3 cut(s) 1530, 2831, 4543
Psp5II RGGWCCY 1 cut(s) 3082
Psp6I CCWGG 7 cut(s) 322, 1254, 1366, 1996, 2870, 3177, 4048
PspCI CACGTG 2 cut(s) 341, 3257
PspEI GGTNACC 2 cut(s) 1418, 3439
PspFI CCCAGC 2 cut(s) 795, 1018
PspGI CCWGG 7 cut(s) 322, 1254, 1366, 1996, 2870, 3177, 4048
PspN4I GGNNCC 8 cut(s) 6, 163, 174, 354, 355, 1372, 3084, 4034
PspOMI GGGCCC 3 cut(s) 161, 353, 4032
PspPPI RGGWCCY 1 cut(s) 3082
PspXI VCTCGAGB 1 cut(s) 462
PsrI GAACNNNNNNTAC 2 cut(s) 4671, 4703
PstI CTGCAG 3 cut(s) 3753, 4305, 4951
PstNI CAGNNNCTG 1 cut(s) 1367
PsuI RGATCY 4 cut(s) 650, 1120, 1370, 1947
PvuII CAGCTG 1 cut(s) 4633
SacI GAGCTC 3 cut(s) 69, 99, 2539
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 3 cut(s) 275, 1686, 3246
ScaI AGTACT 2 cut(s) 2920, 3747
SchI GAGTC 3 cut(s) 44, 1106, 3594
SfcI CTRYAG 9 cut(s) 1468, 3039, 3316, 3721, 3741, 3749, 4301, 4947, 5073
Sfr274I CTCGAG 3 cut(s) 462, 654, 4409
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 2 cut(s) 2127, 4228
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 4 cut(s) 1885, 2669, 3082, 4706
SlaI CTCGAG 3 cut(s) 462, 654, 4409
SmaI CCCGGG 1 cut(s) 160
SphI GCATGC 2 cut(s) 3509, 4469
SspI AATATT 3 cut(s) 2551, 3622, 4442
SstI GAGCTC 3 cut(s) 69, 99, 2539
StyI CCWWGG 3 cut(s) 196, 2601, 2741
TaqII GACCGA 1 cut(s) 3447
TatI WGTACW 5 cut(s) 867, 872, 2018, 2918, 3745
TauI GCSGC 5 cut(s) 44, 1356, 1882, 3075, 3424
TseFI GTSAC 4 cut(s) 1418, 2876, 3252, 3428
TseI GCWGC 6 cut(s) 17, 2746, 3611, 3938, 4427, 4946
Tsp45I GTSAC 4 cut(s) 1418, 2876, 3252, 3428
TspGWI ACGGA 4 cut(s) 593, 1736, 2977, 3271
TspMI CCCGGG 1 cut(s) 158
Van91I CCANNNNNTGG 1 cut(s) 1367
Vha464I CTTAAG 4 cut(s) 743, 785, 2914, 3925
VpaK11BI GGWCC 4 cut(s) 1885, 2669, 3082, 4706
XagI CCTNNNNNAGG 1 cut(s) 3182
XapI RAATTY 8 cut(s) 188, 664, 1402, 1849, 3591, 4113, 4646, 4681
XbaI TCTAGA 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 3 cut(s) 1364, 1970, 4932
XhoI CTCGAG 3 cut(s) 462, 654, 4409
XmaI CCCGGG 1 cut(s) 158
XmiI GTMKAC 3 cut(s) 2169, 2261, 2607
XmnI GAANNNNTTC 3 cut(s) 188, 2139, 2990
ZrmI AGTACT 2 cut(s) 2920, 3747
Zsp2I ATGCAT 3 cut(s) 3560, 4124, 4471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.