AT2G40110

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004292
Physical Location & Seq
Forward (+)
16747831 .. 16749590
1760 bp
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UTR
Exon/CDS
Intron
AT2G40110.2

Sequence Viewer

Length: 393 bp
ATGGGGAGGCTGTTTGTGGTGAATCTTGAAGGGAAGATCTATAGCTGCAAACACTGTAAGACTCATCTTGCTACTTATGAAGACATCATCTCCAAGTCTTTTCACTGCAAGCATGGGAAAGCTTATCTCTTCAATAAGGTTGCCAATGTTTCCATTGGAGAGACTGAAGAAAGACTGATGATGACTGGTAAACATACTGTGGCTGATATTTTCTGTGTCTCGTGTGGATCAATCGTTGGCTGGAAATACGAGACTGCTCATGAGAAGAACCAGAAGTACAAAGAAGGAAAATCAGTGCTTGAAAGATTTAAGATATCGGGTCCTGATGGGAGCAACTATTGGGTGAGTAGCCATGGAAGGCATATAGGTGGAAGTGATGCAGATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

130

Amino Acids

14.55

Weight (kDa)

8.56

Isoelectric Point (pI)

13.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 13 - 101 2.7e-13 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 3 cut(s) 29, 133, 302
AluBI AGCT 2 cut(s) 45, 122
AluI AGCT 2 cut(s) 45, 122
Alw26I GTCTC 3 cut(s) 155, 223, 245
AlwI GGATC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 31, 355
AvaII GGWCC 1 cut(s) 320
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 320
BcoDI GTCTC 3 cut(s) 155, 223, 245
BfmI CTRYAG 1 cut(s) 40
BglII AGATCT 1 cut(s) 36
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 321
BmsI GCATC 2 cut(s) 367, 376
BpiI GAAGAC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse1I ACTGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 352
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 32
BsmAI GTCTC 3 cut(s) 155, 223, 245
Bsp143I GATC 2 cut(s) 36, 227
Bsp19I CCATGG 1 cut(s) 352
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 2 cut(s) 36, 227
BssSI CACGAG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 352
Bst2BI CACGAG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 56, 199
Bst6I CTCTTC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 352
BstKTI GATC 2 cut(s) 39, 230
BstMAI GTCTC 3 cut(s) 155, 223, 245
BstMBI GATC 2 cut(s) 36, 227
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 52, 103, 300
Cac8I GCNNGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 277
CviAII CATG 3 cut(s) 113, 260, 353
CviJI RGCY 6 cut(s) 10, 45, 122, 203, 240, 351
CviKI_1 RGCY 6 cut(s) 10, 45, 122, 203, 240, 351
CviQI GTAC 1 cut(s) 277
DpnI GATC 2 cut(s) 38, 229
DpnII GATC 2 cut(s) 36, 227
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 352
Eco32I GATATC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 320
EcoRV GATATC 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 3 cut(s) 116, 263, 356
FaiI YATR 8 cut(s) 42, 78, 114, 195, 261, 354, 363, 365
FatI CATG 3 cut(s) 112, 259, 352
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 46
Hin1II CATG 3 cut(s) 116, 263, 356
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 2 cut(s) 22, 61
HphI GGTGA 2 cut(s) 31, 355
Hpy166II GTNNAC 1 cut(s) 191
Hpy188III TCNNGA 3 cut(s) 26, 260, 323
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 3 cut(s) 23, 278, 351
HpyCH4III ACNGT 2 cut(s) 56, 199
HpyCH4V TGCA 3 cut(s) 48, 108, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
Hsp92II CATG 3 cut(s) 116, 263, 356
Kzo9I GATC 2 cut(s) 36, 227
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 4 cut(s) 171, 226, 284, 336
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 2 cut(s) 367, 376
MalI GATC 2 cut(s) 38, 229
MboI GATC 2 cut(s) 36, 227
MboII GAAGA 5 cut(s) 46, 92, 121, 179, 277
MflI RGATCY 1 cut(s) 36
MlyI GAGTC 1 cut(s) 55
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 386
NcoI CCATGG 1 cut(s) 352
NdeII GATC 2 cut(s) 36, 227
NlaIII CATG 3 cut(s) 116, 263, 356
NlaIV GGNNCC 1 cut(s) 321
PagI TCATGA 1 cut(s) 259
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 47
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 320
PspPPI RGGWCCY 1 cut(s) 320
PsrI GAACNNNNNNTAC 2 cut(s) 260, 292
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 2 cut(s) 36, 227
Sau96I GGNCC 1 cut(s) 320
SchI GAGTC 1 cut(s) 55
SetI ASST 4 cut(s) 47, 124, 141, 370
SfaNI GCATC 2 cut(s) 367, 376
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 56, 199
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 3 cut(s) 59, 110, 300
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 93
TspRI CASTG 3 cut(s) 59, 110, 300
VpaK11BI GGWCC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.