Rroxscaffold_4G00287150

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004292
Physical Location & Seq
Reverse (-)
8190867 .. 8193568
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00287150.1

Sequence Viewer

Length: 390 bp
ATGGGAAGGTTGTTTGTGCTGAGTCTTGAGGGGAAGATCTATAGCTGCAAGCACTGCCGGACCCATCTTGCTCTTTGTGAAGACATAGTTTCCAAGTCTTTCCAGTGCAGGCATGGGAAGGCTTATCTCTTCAGTAAGGTAGTGAACGTAACTTGTGGAGAGACTGAAGAGAGATTGATGCTGACCGGTATGCACACTGTTGCTGACATTTTCTGTGTTGGATGTGGATCAATAGTAGGGTGGAAATATGAGAGTGCTCATGAAAAGGGCCAGAAGTACAAGGAAGGCAAATCCGTCCTTGAGCGGGTGAAGATATCCGGTCCTGAAGGAAACAATTATTGGGTCAGTCATGGAGCGCATATCGGTAGCAGCGATGCAGATGACGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

129

Amino Acids

14.26

Weight (kDa)

7.63

Isoelectric Point (pI)

13.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 13 - 106 1.6e-13 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 304
AccII CGCG 1 cut(s) 386
AciI CCGC 1 cut(s) 304
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 3 cut(s) 115, 186, 345
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 384
AgeI ACCGGT 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 235
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 45, 369
AsiGI ACCGGT 1 cut(s) 185
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 3 cut(s) 60, 268, 320
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 60, 320
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 32, 381
BccI CCATC 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 40
BglII AGATCT 1 cut(s) 36
BisI GCNGC 2 cut(s) 46, 370
BlsI GCNGC 2 cut(s) 47, 371
Bme18I GGWCC 2 cut(s) 60, 320
BmgT120I GGNCC 3 cut(s) 60, 268, 320
BmiI GGNNCC 1 cut(s) 62
BmsI GCATC 2 cut(s) 168, 364
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 47, 320
BsaBI GATNNNNATC 1 cut(s) 226
BsaWI WCCGGW 2 cut(s) 185, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 226
BseGI GGATG 1 cut(s) 227
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 32, 381
BsgI GTGCAG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 270
BshTI ACCGGT 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 3 cut(s) 58, 186, 318
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 36, 227
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 2 cut(s) 36, 227
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 134, 162
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 50, 110
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 2 cut(s) 39, 230
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 36, 227
BstMWI GCNNNNNNNGC 2 cut(s) 54, 383
BstSFI CTRYAG 1 cut(s) 40
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 32, 381
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 3 cut(s) 52, 110, 195
Cac8I GCNNGC 2 cut(s) 50, 110
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 3 cut(s) 60, 268, 320
Csp6I GTAC 1 cut(s) 277
CspAI ACCGGT 1 cut(s) 185
CviAII CATG 3 cut(s) 113, 260, 350
CviJI RGCY 3 cut(s) 45, 122, 270
CviKI_1 RGCY 3 cut(s) 45, 122, 270
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 38, 229
DpnII GATC 2 cut(s) 36, 227
Eam1104I CTCTTC 2 cut(s) 134, 162
EarI CTCTTC 2 cut(s) 134, 162
Eco32I GATATC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 60, 320
Eco57I CTGAAG 3 cut(s) 115, 186, 345
EcoRV GATATC 1 cut(s) 315
FaeI CATG 3 cut(s) 116, 263, 353
FaiI YATR 8 cut(s) 42, 86, 114, 191, 249, 261, 351, 360
FatI CATG 3 cut(s) 112, 259, 349
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 46, 370
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 46, 370
GlaI GCGC 1 cut(s) 357
GluI GCNGC 2 cut(s) 46, 370
HaeIII GGCC 1 cut(s) 270
HapII CCGG 3 cut(s) 58, 186, 318
HhaI GCGC 1 cut(s) 358
Hin1II CATG 3 cut(s) 116, 263, 353
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 1 cut(s) 22
HpaII CCGG 3 cut(s) 58, 186, 318
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 26, 260, 323
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 112, 278, 320
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 48, 108, 193, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 383
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 116, 263, 353
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 2 cut(s) 36, 227
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 7 cut(s) 71, 94, 116, 199, 284, 331, 336
Lsp1109I GCAGC 2 cut(s) 32, 381
LweI GCATC 2 cut(s) 168, 364
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 38, 229
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 36, 227
MboII GAAGA 5 cut(s) 46, 92, 121, 179, 322
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 1 cut(s) 334
MluI ACGCGT 1 cut(s) 384
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 1 cut(s) 22
MspI CCGG 3 cut(s) 58, 186, 318
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 54, 383
NdeII GATC 2 cut(s) 36, 227
NlaIII CATG 3 cut(s) 116, 263, 353
NlaIV GGNNCC 1 cut(s) 62
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PinAI ACCGGT 1 cut(s) 185
PkrI GCNGC 2 cut(s) 47, 371
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 3 cut(s) 60, 268, 320
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SatI GCNGC 2 cut(s) 46, 370
Sau3AI GATC 2 cut(s) 36, 227
Sau96I GGNCC 3 cut(s) 60, 268, 320
SchI GAGTC 1 cut(s) 31
SduI GDGCHC 1 cut(s) 259
SetI ASST 4 cut(s) 11, 47, 141, 150
SfaNI GCATC 2 cut(s) 168, 364
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 2 cut(s) 60, 320
SmlI CTYRAG 2 cut(s) 26, 299
SmoI CTYRAG 2 cut(s) 26, 299
Sse9I AATT 1 cut(s) 334
SsiI CCGC 1 cut(s) 304
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 150
TasI AATT 1 cut(s) 334
TatI WGTACW 1 cut(s) 276
TscAI CASTG 3 cut(s) 59, 110, 202
TseI GCWGC 2 cut(s) 45, 369
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 3 cut(s) 59, 110, 202
VpaK11BI GGWCC 2 cut(s) 60, 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.