Rw1G031850

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004292
Physical Location & Seq
Reverse (-)
60052373 .. 60055045
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G031850.1

Sequence Viewer

Length: 360 bp
ATGGGAAGGTTGTTTGTGCTGAGTCTTGAGGGGAGGATCTATAGCTGCAAGCACTGCCGGACCCATCTTGCTCTTTGTGAAGACATAGTTTCCAAGTCTTTCCAGTCCAGGCATGGGAAGGCTTATCTCTTCAGTAAGGTAGTGAACGTAACTTGTGGAGAGACTGAAGAGAGATTGATGATGACCGGGATGCACACTGTTGCTGACATTTTCTGTGTTGGATGTGGATCAATAGTGGGGTGGAAATATGAGACTGCTCATGAAAAGGGCCAGAAGTACAAGGAAGGCAAATCCGTCCTTGAGCGGTCAGTAATCAGTAGACTAATGGAGGAAGAAACTTTGATTTCTAATCTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

119

Amino Acids

13.47

Weight (kDa)

8.23

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 13 - 106 2.1e-14 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 319
AciI CCGC 1 cut(s) 304
AclWI GGATC 2 cut(s) 44, 235
AcuI CTGAAG 2 cut(s) 115, 186
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 114
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 155, 245
AlwI GGATC 2 cut(s) 44, 235
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 60, 268
AsuC2I CCSGG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 109
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 155, 245
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 109, 187
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 60, 268
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 2 cut(s) 109, 187
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 47, 320
BpuMI CCSGG 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 226
BseBI CCWGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 195, 227
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 270
BsiSI CCGG 2 cut(s) 58, 186
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 155, 245
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 36, 227
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 2 cut(s) 44, 235
BsrBI CCGCTC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 103
BssMI GATC 2 cut(s) 36, 227
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 134, 162
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 195, 227
BstKTI GATC 2 cut(s) 39, 230
BstMAI GTCTC 2 cut(s) 155, 245
BstMBI GATC 2 cut(s) 36, 227
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 107, 185
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 195, 227
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 52, 195
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 60, 268
Csp6I GTAC 1 cut(s) 277
CviAII CATG 2 cut(s) 113, 260
CviJI RGCY 3 cut(s) 45, 122, 270
CviKI_1 RGCY 3 cut(s) 45, 122, 270
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 38, 229
DpnII GATC 2 cut(s) 36, 227
Eam1104I CTCTTC 2 cut(s) 134, 162
EarI CTCTTC 2 cut(s) 134, 162
Eco47I GGWCC 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 115, 186
EcoRII CCWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 116, 263
FaiI YATR 5 cut(s) 42, 86, 114, 249, 261
FatI CATG 2 cut(s) 112, 259
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 2 cut(s) 202, 234
Fsp4HI GCNGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 46
HaeIII GGCC 1 cut(s) 270
HapII CCGG 2 cut(s) 58, 186
Hin1II CATG 2 cut(s) 116, 263
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 58, 186
Hpy166II GTNNAC 2 cut(s) 145, 320
Hpy188III TCNNGA 2 cut(s) 26, 260
Hpy8I GTNNAC 2 cut(s) 145, 320
HpyAV CCTTC 2 cut(s) 112, 278
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 48, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 116, 263
Kzo9I GATC 2 cut(s) 36, 227
LpnPI CCDG 6 cut(s) 71, 94, 116, 121, 199, 284
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 1 cut(s) 180
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 38, 229
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 36, 227
MboII GAAGA 4 cut(s) 92, 121, 179, 344
MflI RGATCY 1 cut(s) 36
MluCI AATT 1 cut(s) 354
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 3 cut(s) 22, 27, 322
MspI CCGG 2 cut(s) 58, 186
MspR9I CCNGG 2 cut(s) 109, 187
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 187
NdeII GATC 2 cut(s) 36, 227
NlaIII CATG 2 cut(s) 116, 263
NlaIV GGNNCC 1 cut(s) 62
PagI TCATGA 1 cut(s) 259
PkrI GCNGC 1 cut(s) 47
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 60, 268
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 2 cut(s) 36, 227
Sau96I GGNCC 2 cut(s) 60, 268
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 109, 187
SetI ASST 4 cut(s) 11, 47, 141, 150
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 26, 299
SmoI CTYRAG 2 cut(s) 26, 299
Sse9I AATT 1 cut(s) 354
SsiI CCGC 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 107, 185
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 150
TasI AATT 1 cut(s) 354
TatI WGTACW 1 cut(s) 276
TscAI CASTG 2 cut(s) 59, 202
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 2 cut(s) 59, 202
VpaK11BI GGWCC 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.