Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004292

Physical Location & Seq

Genomic Coordinates Reverse (-)

47001818 .. 47004520

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0353000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAGCGTGATTTTGCCTTTGTTGAATTTAATGATCCCCGTGATGCTGATGACGCAAGATATAGCCTGAATGGTCGGGATGTTGATGGGAGCCGTTTAATTGTGGAATTTGCCAGGGGGGCACCACGTGGTCCAGGTGGATCCCGTGAGTATCTTGGTAGAGGGCCTCCTCCTGGTTCAGGGCGCTGTTTCAATTGTGGACTTGATGGGCACTGGGCTCGAGATTGCAAAGCTGGGGACTGGAAGAATAAGTGTTATCGCTGTGGGGAACGAGGCCACATTGAAAGAAATTGTCAGAACAGCCCGAAGAAAACCTCCTCCAAACGTGGGCGGAGTCACTCACGCTCACCAAGTCCTAGGCGGGGCAGAAGTCGAAGCCGTAGTTACAGCAGGGGTCATAGTTACAGTCAATCAAGATCACCTGTGAGGAGAGAAAGGAGTCTAGAGAGAAGATCAAGAAGTCCTGCAGACAGTCGGAGCCCTAAGCGTCGCAGGGCTTCTCCACCACCTTCCAAGGGGAGGAAGCGTGACCAATCTCCTGATGGGAGAAGCCCACAAGAGCGGCGTAGTGTCTCCCCTCAGGATCACCGATCTGACTACAGTAGGAGTCCCAGGGGAAAGAGTAGAAGCCCTATAGGTGATGCCGAAGAGAAAAGCAATGGTGATAAGATGCACAGAAGCCCTGTAGAAGAAAATGGCCATAGCCGCAGCCCAAGCCCCGTACGTAGGGGTGATAGGAGCCCCGTTGAAGAGGATGATGATAACCACGGTTCTCCAAGAGGCAGTGAATCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

265

Amino Acids

29.81

Weight (kDa)

10.78

Isoelectric Point (pI)

116.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	3 - 33	5.1e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40110 AT2G40110 AT2G40110 AT2G40110 AT3G11230 AT3G11230 AT3G11230 AT3G11230 AT3G55890 AT3G55890 AT3G55890 AT3G55890
fragaria_vesca	FvH4_7g24340 FvH4_7g24340 FvH4_7g24340 FvH4_7g24340
malus_domestica	MD01G1132600.v1.1 MD07G1220400.v1.1
prunus_persica	Prupe.2G248800_v2.0.a1 Prupe.2G248800_v2.0.a1
pyrus_communis	pycom01g16930 pycom07g19940
rosa_chinensis	RchiOBHm_Chr1g0370001
rosa_laevigata	RLG00000027079
rosa_roxburghii	Rroxscaffold_4G00286880 Rroxscaffold_4G00287150
rosa_rugosa	Rorug01G0353000 Rorug01G0353100 Rorug01G0353100
rosa_samantha	Rh1BG325200 Rh1DG355700
rosa_wichuraiana	Rw1G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccBSI	CCGCTC	1 cut(s)	562
AciI	CCGC	4 cut(s)	331, 361, 562, 706
AclWI	GGATC	4 cut(s)	29, 135, 148, 591
AcoI	YGGCCR	1 cut(s)	697
AcsI	RAATTY	2 cut(s)	26, 107
AcvI	CACGTG	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	723
AfiI	CCNNNNNNNGG	7 cut(s)	173, 179, 327, 362, 515, 519, 726
AgsI	TTSAA	4 cut(s)	26, 193, 284, 749
AjnI	CCWGG	4 cut(s)	113, 133, 172, 611
AluBI	AGCT	2 cut(s)	233, 794
AluI	AGCT	2 cut(s)	233, 794
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	4 cut(s)	29, 135, 148, 591
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	3 cut(s)	164, 274, 697
ApeKI	GCWGC	1 cut(s)	708
ApoI	RAATTY	2 cut(s)	26, 107
AspA2I	CCTAGG	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	131, 164
AsuHPI	GGTGA	6 cut(s)	339, 411, 578, 650, 674, 743
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	131
AvrII	CCTAGG	1 cut(s)	356
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	2 cut(s)	124, 213
BalI	TGGCCA	1 cut(s)	699
BamHI	GGATCC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	3 cut(s)	220, 482, 743
BbrPI	CACGTG	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	720
BccI	CCATC	3 cut(s)	80, 200, 536
BceAI	ACGGC	2 cut(s)	78, 363
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	4 cut(s)	115, 135, 174, 613
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	2 cut(s)	357, 443
BfmI	CTRYAG	4 cut(s)	465, 598, 633, 684
BfoI	RGCGCY	1 cut(s)	187
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	563, 706, 709
BlnI	CCTAGG	1 cut(s)	356
BlsI	GCNGC	3 cut(s)	564, 707, 710
Bme1390I	CCNGG	4 cut(s)	115, 135, 174, 613
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	131, 164
BmiI	GGNNCC	5 cut(s)	92, 123, 142, 479, 740
BmrFI	CCNGG	4 cut(s)	115, 135, 174, 613
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	3 cut(s)	34, 631, 660
BmuI	ACTGGG	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	483
BsaAI	YACGTR	2 cut(s)	128, 725
BsaJI	CCNNGG	6 cut(s)	114, 356, 513, 611, 612, 766
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	7 cut(s)	173, 179, 327, 362, 515, 519, 726
Bse1I	ACTGG	2 cut(s)	218, 245
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	664
BseBI	CCWGG	4 cut(s)	115, 135, 174, 613
BseDI	CCNNGG	6 cut(s)	114, 356, 513, 611, 612, 766
BseGI	GGATG	2 cut(s)	85, 760
BseLI	CCNNNNNNNGG	7 cut(s)	173, 179, 327, 362, 515, 519, 726
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	2 cut(s)	218, 245
BseRI	GAGGAG	3 cut(s)	159, 307, 442
BseSI	GKGCMC	2 cut(s)	124, 213
BseXI	GCAGC	1 cut(s)	720
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	3 cut(s)	166, 276, 699
BshNI	GGYRCC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	219
BsiWI	CGTACG	1 cut(s)	721
BslFI	GGGAC	2 cut(s)	251, 594
BslI	CCNNNNNNNGG	7 cut(s)	173, 179, 327, 362, 515, 519, 726
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	2 cut(s)	251, 594
BsnI	GGCC	3 cut(s)	166, 276, 699
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	5 cut(s)	124, 213, 220, 482, 743
Bsp143I	GATC	6 cut(s)	34, 140, 416, 452, 583, 590
BspACI	CCGC	4 cut(s)	331, 361, 562, 706
BspANI	GGCC	3 cut(s)	166, 276, 699
BspCNI	CTCAG	1 cut(s)	592
BspLI	GGNNCC	5 cut(s)	92, 123, 142, 479, 740
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	4 cut(s)	29, 135, 148, 591
BspT107I	GGYRCC	1 cut(s)	121
BsrBI	CCGCTC	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	218, 245
BssECI	CCNNGG	6 cut(s)	114, 356, 513, 611, 612, 766
BssMI	GATC	6 cut(s)	34, 140, 416, 452, 583, 590
BssT1I	CCWWGG	2 cut(s)	356, 513
Bst2UI	CCWGG	4 cut(s)	115, 135, 174, 613
Bst4CI	ACNGT	4 cut(s)	407, 473, 602, 770
Bst6I	CTCTTC	2 cut(s)	642, 744
BstBAI	YACGTR	2 cut(s)	128, 725
BstDEI	CTNAG	2 cut(s)	483, 579
BstDSI	CCRYGG	1 cut(s)	766
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	85, 760
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	6 cut(s)	37, 143, 419, 455, 586, 593
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	6 cut(s)	34, 140, 416, 452, 583, 590
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 119, 705, 714
BstNI	CCWGG	4 cut(s)	115, 135, 174, 613
BstSCI	CCNGG	4 cut(s)	113, 133, 172, 611
BstSFI	CTRYAG	4 cut(s)	465, 598, 633, 684
BstSLI	GKGCMC	2 cut(s)	124, 213
BstSNI	TACGTA	1 cut(s)	725
BstV1I	GCAGC	1 cut(s)	720
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	3 cut(s)	166, 276, 699
BtgI	CCRYGG	1 cut(s)	766
BtsCI	GGATG	2 cut(s)	85, 760
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	2 cut(s)	211, 790
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	131, 164
CseI	GACGC	2 cut(s)	62, 476
Csp6I	GTAC	1 cut(s)	722
CviQI	GTAC	1 cut(s)	722
DdeI	CTNAG	2 cut(s)	483, 579
DpnI	GATC	6 cut(s)	36, 142, 418, 454, 585, 592
DpnII	GATC	6 cut(s)	34, 140, 416, 452, 583, 590
DraIII	CACNNNGTG	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	697
Eam1104I	CTCTTC	2 cut(s)	642, 744
EarI	CTCTTC	2 cut(s)	642, 744
EciI	GGCGGA	1 cut(s)	346
Eco105I	TACGTA	1 cut(s)	725
Eco130I	CCWWGG	2 cut(s)	356, 513
Eco24I	GRGCYC	3 cut(s)	220, 482, 743
Eco47I	GGWCC	1 cut(s)	131
Eco72I	CACGTG	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	4 cut(s)	113, 133, 172, 611
EcoT14I	CCWWGG	2 cut(s)	356, 513
EcoT38I	GRGCYC	3 cut(s)	220, 482, 743
ErhI	CCWWGG	2 cut(s)	356, 513
FaiI	YATR	4 cut(s)	63, 399, 635, 702
FaqI	GGGAC	2 cut(s)	251, 594
FauI	CCCGC	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	563, 706, 709
FokI	GGATG	2 cut(s)	92, 767
FriOI	GRGCYC	3 cut(s)	220, 482, 743
Fsp4HI	GCNGC	3 cut(s)	563, 706, 709
FspBI	CTAG	2 cut(s)	357, 443
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	3 cut(s)	563, 706, 709
GsaI	CCCAGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	166, 276, 699
HgaI	GACGC	2 cut(s)	62, 476
HhaI	GCGC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	4 cut(s)	334, 439, 607, 788
HphI	GGTGA	6 cut(s)	339, 411, 578, 650, 674, 743
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	3 cut(s)	297, 477, 595
Hpy188III	TCNNGA	7 cut(s)	77, 221, 414, 443, 456, 539, 581
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	4 cut(s)	407, 473, 602, 770
HpyCH4IV	ACGT	3 cut(s)	127, 325, 724
HpyCH4V	TGCA	3 cut(s)	228, 467, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 119, 705, 714
HpyF3I	CTNAG	2 cut(s)	483, 579
HpySE526I	ACGT	3 cut(s)	127, 325, 724
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	34, 140, 416, 452, 583, 590
LmnI	GCTCC	3 cut(s)	90, 477, 738
Lsp1109I	GCAGC	1 cut(s)	720
LweI	GCATC	3 cut(s)	34, 631, 660
MaeI	CTAG	2 cut(s)	357, 443
MaeII	ACGT	3 cut(s)	127, 325, 724
MaeIII	GTNAC	4 cut(s)	335, 383, 401, 527
MalI	GATC	6 cut(s)	36, 142, 418, 454, 585, 592
MbiI	CCGCTC	1 cut(s)	562
MboI	GATC	6 cut(s)	34, 140, 416, 452, 583, 590
MboII	GAAGA	6 cut(s)	256, 319, 462, 659, 701, 761
MfeI	CAATTG	1 cut(s)	193
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	5 cut(s)	124, 213, 220, 482, 743
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	5 cut(s)	26, 99, 107, 193, 289
MluNI	TGGCCA	1 cut(s)	699
MlyI	GAGTC	3 cut(s)	343, 448, 616
MmeI	TCCRAC	1 cut(s)	455
Mox20I	TGGCCA	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	3 cut(s)	30, 98, 796
Msp20I	TGGCCA	1 cut(s)	699
MspR9I	CCNGG	4 cut(s)	115, 135, 174, 613
MunI	CAATTG	1 cut(s)	193
MvaI	CCWGG	4 cut(s)	115, 135, 174, 613
MwoI	GCNNNNNNNGC	4 cut(s)	53, 119, 705, 714
NdeII	GATC	6 cut(s)	34, 140, 416, 452, 583, 590
NlaIV	GGNNCC	5 cut(s)	92, 123, 142, 479, 740
NmuCI	GTSAC	2 cut(s)	335, 527
PaeR7I	CTCGAG	1 cut(s)	219
PasI	CCCWGGG	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	788
Pfl23II	CGTACG	1 cut(s)	721
PkrI	GCNGC	3 cut(s)	564, 707, 710
PleI	GAGTC	3 cut(s)	342, 447, 615
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
PpsI	GAGTC	3 cut(s)	342, 447, 615
Ppu21I	YACGTR	2 cut(s)	128, 725
Psp6I	CCWGG	4 cut(s)	113, 133, 172, 611
PspCI	CACGTG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	4 cut(s)	113, 133, 172, 611
PspLI	CGTACG	1 cut(s)	721
PspN4I	GGNNCC	5 cut(s)	92, 123, 142, 479, 740
PspPI	GGNCC	2 cut(s)	131, 164
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	723
RsaNI	GTAC	1 cut(s)	722
SaqAI	TTAA	3 cut(s)	30, 98, 796
SatI	GCNGC	3 cut(s)	563, 706, 709
Sau3AI	GATC	6 cut(s)	34, 140, 416, 452, 583, 590
Sau96I	GGNCC	2 cut(s)	131, 164
SchI	GAGTC	3 cut(s)	343, 448, 616
ScrFI	CCNGG	4 cut(s)	115, 135, 174, 613
SduI	GDGCHC	5 cut(s)	124, 213, 220, 482, 743
SfaNI	GCATC	3 cut(s)	34, 631, 660
SfcI	CTRYAG	4 cut(s)	465, 598, 633, 684
Sfr274I	CTCGAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SnaBI	TACGTA	1 cut(s)	725
Sse9I	AATT	5 cut(s)	26, 99, 107, 193, 289
SsiI	CCGC	4 cut(s)	331, 361, 562, 706
SspMI	CTAG	2 cut(s)	357, 443
StyD4I	CCNGG	4 cut(s)	113, 133, 172, 611
StyI	CCWWGG	2 cut(s)	356, 513
TaaI	ACNGT	4 cut(s)	407, 473, 602, 770
TaiI	ACGT	3 cut(s)	130, 328, 727
TaqI	TCGA	2 cut(s)	220, 373
TasI	AATT	5 cut(s)	26, 99, 107, 193, 289
TauI	GCSGC	2 cut(s)	565, 708
TfiI	GAWTC	1 cut(s)	788
Tru1I	TTAA	3 cut(s)	30, 98, 796
Tru9I	TTAA	3 cut(s)	30, 98, 796
TscAI	CASTG	2 cut(s)	218, 790
TseFI	GTSAC	2 cut(s)	335, 527
TseI	GCWGC	1 cut(s)	708
Tsp45I	GTSAC	2 cut(s)	335, 527
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	218, 790
VpaK11BI	GGWCC	1 cut(s)	131
XagI	CCTNNNNNAGG	1 cut(s)	177
XapI	RAATTY	2 cut(s)	26, 107
XbaI	TCTAGA	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	219
XmaJI	CCTAGG	1 cut(s)	356
XspI	CTAG	2 cut(s)	357, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.