pycom07g19940

Yippee-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0004292
Physical Location & Seq
Reverse (-)
22150528 .. 22152524
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g19940.5

Sequence Viewer

Length: 390 bp
ATGGGGAGGCTGTTTGTGGTGAGTCTAGAGGGGAAGATCTACAGCTGCAAGCACTGCCGCACCCATCTTGCTCTTTGTGAGGACGTAGTTTCCAAGTCTTTTTACAGCAGGCATGGGAAGGCTTATCTCTTCAGTAAGGTAGTGAACGTGTTTTCCGGAGAGTGTGAAGATAGAGCGATGATGACTGGACTGCACACAGTTGCTGACATTTTCTGCGTTGGGTGTGGATCGATAGTGGGGTGGAAATATGAAACTGCCCACGACAAGAGCCAGAAGTACAAGGAAGGAAAATCCGTACTTGAGCGGGTTAAGGTGTCGGGTCCGGAAGGAAGAACTTATTGGGCCAGTCATGAAGCACAAGTCGGTAGCAGCGATGCAGACGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

130

Amino Acids

14.29

Weight (kDa)

7.64

Isoelectric Point (pI)

12.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 304
AccIII TCCGGA 2 cut(s) 155, 322
AciI CCGC 2 cut(s) 58, 304
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 115
AfaI GTAC 2 cut(s) 278, 297
AflIII ACRYGT 1 cut(s) 147
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 203
Aor13HI TCCGGA 2 cut(s) 155, 322
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 45, 369
AspS9I GGNCC 2 cut(s) 320, 342
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 32, 381
BccI CCATC 1 cut(s) 72
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 40
BglII AGATCT 1 cut(s) 36
BisI GCNGC 3 cut(s) 46, 58, 370
BlsI GCNGC 3 cut(s) 47, 59, 371
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 320, 342
BmiI GGNNCC 1 cut(s) 321
BmsI GCATC 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 230
BsaWI WCCGGW 2 cut(s) 155, 322
Bse1I ACTGG 2 cut(s) 190, 345
BseAI TCCGGA 2 cut(s) 155, 322
BseCI ATCGAT 1 cut(s) 230
BseNI ACTGG 2 cut(s) 190, 345
BseXI GCAGC 2 cut(s) 32, 381
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 230
BsiSI CCGG 2 cut(s) 156, 323
BsnI GGCC 1 cut(s) 344
Bsp13I TCCGGA 2 cut(s) 155, 322
Bsp143I GATC 2 cut(s) 36, 227
BspACI CCGC 2 cut(s) 58, 304
BspANI GGCC 1 cut(s) 344
BspDI ATCGAT 1 cut(s) 230
BspEI TCCGGA 2 cut(s) 155, 322
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 304
BsrI ACTGG 2 cut(s) 190, 345
BssMI GATC 2 cut(s) 36, 227
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 50, 110
BstKTI GATC 2 cut(s) 39, 230
BstMBI GATC 2 cut(s) 36, 227
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 32, 381
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
Bsu15I ATCGAT 1 cut(s) 230
BsuRI GGCC 1 cut(s) 344
BsuTUI ATCGAT 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 50, 110
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 320, 342
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 2 cut(s) 277, 296
CviAII CATG 2 cut(s) 113, 350
CviJI RGCY 5 cut(s) 10, 45, 122, 270, 344
CviKI_1 RGCY 5 cut(s) 10, 45, 122, 270, 344
CviQI GTAC 2 cut(s) 277, 296
DpnI GATC 2 cut(s) 38, 229
DpnII GATC 2 cut(s) 36, 227
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 115
FaeI CATG 2 cut(s) 116, 353
FaiI YATR 3 cut(s) 114, 249, 351
FatI CATG 2 cut(s) 112, 349
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 3 cut(s) 46, 58, 370
Fsp4HI GCNGC 3 cut(s) 46, 58, 370
FspBI CTAG 1 cut(s) 26
GluI GCNGC 3 cut(s) 46, 58, 370
HaeIII GGCC 1 cut(s) 344
HapII CCGG 2 cut(s) 156, 323
Hin1II CATG 2 cut(s) 116, 353
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 156, 323
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 4 cut(s) 26, 156, 323, 350
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 4 cut(s) 112, 278, 320, 377
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 2 cut(s) 84, 147
HpyCH4V TGCA 3 cut(s) 48, 193, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpySE526I ACGT 2 cut(s) 84, 147
Hsp92II CATG 2 cut(s) 116, 353
Kpn2I TCCGGA 2 cut(s) 155, 322
Kzo9I GATC 2 cut(s) 36, 227
LpnPI CCDG 6 cut(s) 94, 169, 171, 284, 336, 358
Lsp1109I GCAGC 2 cut(s) 32, 381
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 84, 147
MalI GATC 2 cut(s) 38, 229
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 36, 227
MboII GAAGA 4 cut(s) 46, 121, 179, 342
MflI RGATCY 1 cut(s) 36
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 2 cut(s) 22, 73
MroI TCCGGA 2 cut(s) 155, 322
MseI TTAA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 2 cut(s) 156, 323
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 2 cut(s) 36, 227
NlaIII CATG 2 cut(s) 116, 353
NlaIV GGNNCC 1 cut(s) 321
PagI TCATGA 1 cut(s) 349
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PkrI GCNGC 3 cut(s) 47, 59, 371
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 2 cut(s) 320, 342
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 2 cut(s) 278, 297
RsaNI GTAC 2 cut(s) 277, 296
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 46, 58, 370
Sau3AI GATC 2 cut(s) 36, 227
Sau96I GGNCC 2 cut(s) 320, 342
SchI GAGTC 1 cut(s) 31
SetI ASST 6 cut(s) 47, 87, 141, 150, 315, 388
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SsiI CCGC 2 cut(s) 58, 304
SspMI CTAG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 2 cut(s) 87, 150
TaqI TCGA 1 cut(s) 230
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 59
TseI GCWGC 2 cut(s) 45, 369
TspDTI ATGAA 2 cut(s) 264, 366
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 320
XbaI TCTAGA 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.