AT3G55890

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004292
Physical Location & Seq
Forward (+)
20740610 .. 20742441
1832 bp
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UTR
Exon/CDS
Intron
AT3G55890.4

Sequence Viewer

Length: 366 bp
ATGGGTAGGGTTTTTATGGTTGATCTGGAAGGGAACATCTACATCTGCAAACTCTGTAAGACCCATCTTTCTACAGACCAAGACATCATGTCCAAGTCTTTTCAATGCAAGAACGGAAGAGCTTATCTTTTCAACAACGTTGTAAACGTATCTGTTGGAGAGAAAGAAGACAGAATGATGATAACTGGACTACACAACGTAGTTGACATTTTCTGTGTTGGTTGTGGATCAAACGTTGGCTGGAAATACGAGTTTGCACATGAAAAGAGCCAGAAGTATAAGGAAGGAAAATCTGTTCTTGAATTATACAAGATTTCGGGTCCTCATGATAGCAACGACTTGGTTAGTGATGGAGATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

5.75

Isoelectric Point (pI)

13.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 106 4.2e-11 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 138, 234
AclWI GGATC 1 cut(s) 235
AgsI TTSAA 3 cut(s) 104, 133, 302
AhdI GACNNNNNGTC 1 cut(s) 88
AloI GAACNNNNNNTCC 2 cut(s) 279, 311
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 320
AvaII GGWCC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 174
BccI CCATC 2 cut(s) 72, 344
BfmI CTRYAG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 320
BmeRI GACNNNNNGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 321
BmsI GCATC 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 190
Bsp143I GATC 2 cut(s) 22, 227
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 190
BssMI GATC 2 cut(s) 22, 227
Bst6I CTCTTC 1 cut(s) 112
BstKTI GATC 2 cut(s) 25, 230
BstMBI GATC 2 cut(s) 22, 227
BstSFI CTRYAG 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 174
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 320
CviAII CATG 3 cut(s) 88, 260, 326
CviJI RGCY 3 cut(s) 122, 240, 270
CviKI_1 RGCY 3 cut(s) 122, 240, 270
DpnI GATC 2 cut(s) 24, 229
DpnII GATC 2 cut(s) 22, 227
DriI GACNNNNNGTC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 112
Eam1105I GACNNNNNGTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 320
FaeI CATG 3 cut(s) 91, 263, 329
FaiI YATR 6 cut(s) 17, 89, 261, 279, 307, 327
FatI CATG 3 cut(s) 87, 259, 325
Hin1II CATG 3 cut(s) 91, 263, 329
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 145, 205
Hpy188III TCNNGA 3 cut(s) 26, 299, 326
Hpy8I GTNNAC 2 cut(s) 145, 205
HpyAV CCTTC 2 cut(s) 23, 278
HpyCH4IV ACGT 4 cut(s) 138, 147, 198, 234
HpyCH4V TGCA 3 cut(s) 48, 108, 257
HpySE526I ACGT 4 cut(s) 138, 147, 198, 234
Hsp92II CATG 3 cut(s) 91, 263, 329
Kzo9I GATC 2 cut(s) 22, 227
LguI GCTCTTC 1 cut(s) 112
LpnPI CCDG 4 cut(s) 11, 171, 226, 284
LweI GCATC 1 cut(s) 349
MaeII ACGT 4 cut(s) 138, 147, 198, 234
MalI GATC 2 cut(s) 24, 229
MboI GATC 2 cut(s) 22, 227
MboII GAAGA 2 cut(s) 129, 179
MluCI AATT 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 1 cut(s) 333
NdeII GATC 2 cut(s) 22, 227
NlaIII CATG 3 cut(s) 91, 263, 329
NlaIV GGNNCC 1 cut(s) 321
PagI TCATGA 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 320
Psp1406I AACGTT 2 cut(s) 138, 234
Psp5II RGGWCCY 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 320
PspPPI RGGWCCY 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 112
Sau3AI GATC 2 cut(s) 22, 227
Sau96I GGNCC 1 cut(s) 320
SetI ASST 5 cut(s) 124, 141, 150, 201, 237
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 320
Sse9I AATT 1 cut(s) 302
TaiI ACGT 4 cut(s) 141, 150, 201, 237
TasI AATT 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.