Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004292

Physical Location & Seq

Genomic Coordinates Reverse (-)

26433623 .. 26436868

Gene Structure 3246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G248800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGGAGGTTGTTTGTGCAGAGTCTTGAGGGGAAGATCTATAGCTGCAAGCACTGCCGAACCCACCTAGCTCTTTGTCAGGATATAGTTTCCAAGTCTTTCCACAGCAGGCATGGGAAGGCTTATCTCTTCAGTAAGGTAGTGAACGTAACCTCCGGAGAGAGAGAAGAGAGAATGATGATGACAGGGTTGCACACTGTTGCCGACATTTTTTGTGTTGGATGTGGATCAATAGTGGGGTGGAAATATGAGACTGCCCACGAAAAGAGCCAGAAGTACAAGGAAGGAAAATCCGTACTTGAGCGGGTTAAGATGTCGGGGCCTGACGGGAGCAATTATTGGGTCAGTCATGAAGCACAAGTTGGAAGCAGTGATGCAGATGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yippee-Mis18

Protein Analysis

130

Amino Acids

14.42

Weight (kDa)

8.27

Isoelectric Point (pI)

15.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40110 AT2G40110 AT2G40110 AT2G40110 AT3G11230 AT3G11230 AT3G11230 AT3G11230 AT3G55890 AT3G55890 AT3G55890 AT3G55890
fragaria_vesca	FvH4_7g24340 FvH4_7g24340 FvH4_7g24340 FvH4_7g24340
malus_domestica	MD01G1132600.v1.1 MD07G1220400.v1.1
prunus_persica	Prupe.2G248800_v2.0.a1 Prupe.2G248800_v2.0.a1
pyrus_communis	pycom01g16930 pycom07g19940
rosa_chinensis	RchiOBHm_Chr1g0370001
rosa_laevigata	RLG00000027079
rosa_roxburghii	Rroxscaffold_4G00286880 Rroxscaffold_4G00287150
rosa_rugosa	Rorug01G0353000 Rorug01G0353100 Rorug01G0353100
rosa_samantha	Rh1BG325200 Rh1DG355700
rosa_wichuraiana	Rw1G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	304
AccIII	TCCGGA	1 cut(s)	155
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	115
AfaI	GTAC	2 cut(s)	278, 297
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	45, 71
AluI	AGCT	2 cut(s)	45, 71
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	40
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	321
BmsI	GCATC	1 cut(s)	364
BpuEI	CTTGAG	2 cut(s)	47, 320
BsaBI	GATNNNNATC	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse8I	GATNNNNATC	1 cut(s)	226
BseAI	TCCGGA	1 cut(s)	155
BseGI	GGATG	1 cut(s)	227
BseJI	GATNNNNATC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	32
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	322
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	36, 227
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	235
BsrBI	CCGCTC	1 cut(s)	304
BssMI	GATC	2 cut(s)	36, 227
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	134, 162
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	50, 110
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	2 cut(s)	39, 230
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	36, 227
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	227
BtsI	GCAGTG	2 cut(s)	52, 376
BtsIMutI	CAGTG	3 cut(s)	52, 195, 376
Cac8I	GCNNGC	2 cut(s)	50, 110
CciI	TCATGA	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	277, 296
CviAII	CATG	2 cut(s)	113, 350
CviJI	RGCY	5 cut(s)	45, 71, 122, 270, 322
CviKI_1	RGCY	5 cut(s)	45, 71, 122, 270, 322
CviQI	GTAC	2 cut(s)	277, 296
DpnI	GATC	2 cut(s)	38, 229
DpnII	GATC	2 cut(s)	36, 227
Eam1104I	CTCTTC	2 cut(s)	134, 162
EarI	CTCTTC	2 cut(s)	134, 162
Eco57I	CTGAAG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	320
FaeI	CATG	2 cut(s)	116, 353
FaiI	YATR	5 cut(s)	42, 86, 114, 249, 351
FatI	CATG	2 cut(s)	112, 349
FauI	CCCGC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	2 cut(s)	116, 353
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	4 cut(s)	26, 80, 156, 350
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	112, 278
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	19, 48, 193, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	116, 353
Kpn2I	TCCGGA	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	36, 227
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	6 cut(s)	65, 94, 169, 171, 284, 336
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	38, 229
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	2 cut(s)	36, 227
MboII	GAAGA	3 cut(s)	46, 121, 179
MflI	RGATCY	1 cut(s)	36
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	2 cut(s)	199, 343
MnlI	CCTC	2 cut(s)	22, 163
MroI	TCCGGA	1 cut(s)	155
MseI	TTAA	1 cut(s)	309
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	2 cut(s)	36, 227
NlaIII	CATG	2 cut(s)	116, 353
NlaIV	GGNNCC	1 cut(s)	321
PagI	TCATGA	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	2 cut(s)	278, 297
RsaNI	GTAC	2 cut(s)	277, 296
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	2 cut(s)	36, 227
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	31
SetI	ASST	7 cut(s)	11, 47, 69, 73, 141, 150, 155
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	26, 299
SmoI	CTYRAG	2 cut(s)	26, 299
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	150
TasI	AATT	1 cut(s)	334
TatI	WGTACW	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	3 cut(s)	59, 202, 376
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	3 cut(s)	59, 202, 376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.