RchiOBHm_Chr1g0370001

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004292
Physical Location & Seq
Reverse (-)
59608937 .. 59611653
2717 bp
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UTR
Exon/CDS
Intron
PRQ59422

Sequence Viewer

Length: 390 bp
ATGGGAAGGTTGTTTGTGCTGAGTCTCGAGGGGAAGATCTATAGCTGCAAGCACTGCCGGACCCATCTTGCTCTTTGTGAAGACATAGTTTCCAAGTCTTTCCAGTCCAGGCATGGGAAGGCTTATCTCTTCAGTAAGGTAGTGAACGTAACTTGTGGAGAGACTGAAGAGAGATTGATGATGACCGGGATGCACACTGTTGCTGACATTTTCTGTGTTGGATGTGGATCAATAGTGGGGTGGAAATATGAGACTGCTCATGAAAAGGGCCAGAAGTACAAGGAAGGCAAATCCGTCCTTGAGCGGGTGAAGATATCCGGTCCGGAAGGAAACAATTATTGGGTCAGTCATGGAGCGCATATCGGTGGCAGCGATGCAGATGACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

129

Amino Acids

14.24

Weight (kDa)

7.66

Isoelectric Point (pI)

16.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 13 - 106 2.1e-14 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 304
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 1 cut(s) 304
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 2 cut(s) 115, 186
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 114, 304
AjnI CCWGG 1 cut(s) 107
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 3 cut(s) 29, 155, 245
AlwI GGATC 1 cut(s) 235
Ama87I CYCGRG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 45, 369
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 3 cut(s) 60, 268, 320
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 60, 320
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 32, 381
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 109
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 29, 155, 245
BfmI CTRYAG 1 cut(s) 40
BglII AGATCT 1 cut(s) 36
BisI GCNGC 2 cut(s) 46, 370
BlsI GCNGC 2 cut(s) 47, 371
Bme1390I CCNGG 2 cut(s) 109, 187
Bme18I GGWCC 2 cut(s) 60, 320
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 60, 268, 320
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 2 cut(s) 109, 187
BmsI GCATC 2 cut(s) 180, 364
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 226
BsaWI WCCGGW 2 cut(s) 317, 322
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 304
Bse1I ACTGG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 226
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 195, 227
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 114, 304
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 32, 381
BshFI GGCC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 4 cut(s) 58, 186, 318, 323
BslI CCNNNNNNNGG 2 cut(s) 114, 304
BsmAI GTCTC 3 cut(s) 29, 155, 245
BsnI GGCC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 26
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 2 cut(s) 36, 227
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 12
BspEI TCCGGA 1 cut(s) 322
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 103
BssMI GATC 2 cut(s) 36, 227
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 134, 162
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 195, 227
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 2 cut(s) 39, 230
BstMAI GTCTC 3 cut(s) 29, 155, 245
BstMBI GATC 2 cut(s) 36, 227
BstMWI GCNNNNNNNGC 2 cut(s) 54, 383
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 107, 185
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 32, 381
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 195, 227
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 52, 195
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 3 cut(s) 60, 268, 320
CpoI CGGWCCG 1 cut(s) 320
Csp6I GTAC 1 cut(s) 277
CspI CGGWCCG 1 cut(s) 320
CviAII CATG 3 cut(s) 113, 260, 350
CviJI RGCY 3 cut(s) 45, 122, 270
CviKI_1 RGCY 3 cut(s) 45, 122, 270
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 38, 229
DpnII GATC 2 cut(s) 36, 227
Eam1104I CTCTTC 2 cut(s) 134, 162
EarI CTCTTC 2 cut(s) 134, 162
Eco32I GATATC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 60, 320
Eco57I CTGAAG 2 cut(s) 115, 186
Eco88I CYCGRG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 107
EcoRV GATATC 1 cut(s) 315
FaeI CATG 3 cut(s) 116, 263, 353
FaiI YATR 7 cut(s) 42, 86, 114, 249, 261, 351, 360
FatI CATG 3 cut(s) 112, 259, 349
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 46, 370
FokI GGATG 2 cut(s) 202, 234
Fsp4HI GCNGC 2 cut(s) 46, 370
GlaI GCGC 1 cut(s) 357
GluI GCNGC 2 cut(s) 46, 370
HaeIII GGCC 1 cut(s) 270
HapII CCGG 4 cut(s) 58, 186, 318, 323
HhaI GCGC 1 cut(s) 358
Hin1II CATG 3 cut(s) 116, 263, 353
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 1 cut(s) 22
HpaII CCGG 4 cut(s) 58, 186, 318, 323
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 26, 260, 323
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 112, 278, 320
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 48, 193, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 383
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 116, 263, 353
HspAI GCGC 1 cut(s) 356
Kpn2I TCCGGA 1 cut(s) 322
Kzo9I GATC 2 cut(s) 36, 227
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 8 cut(s) 71, 94, 116, 121, 199, 284, 331, 336
Lsp1109I GCAGC 2 cut(s) 32, 381
LweI GCATC 2 cut(s) 180, 364
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 38, 229
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 36, 227
MboII GAAGA 5 cut(s) 46, 92, 121, 179, 322
MflI RGATCY 1 cut(s) 36
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 1 cut(s) 22
MroI TCCGGA 1 cut(s) 322
MseI TTAA 1 cut(s) 388
MslI CAYNNNNRTG 1 cut(s) 363
MspI CCGG 4 cut(s) 58, 186, 318, 323
MspR9I CCNGG 2 cut(s) 109, 187
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 54, 383
NciI CCSGG 1 cut(s) 187
NdeII GATC 2 cut(s) 36, 227
NlaIII CATG 3 cut(s) 116, 263, 353
NlaIV GGNNCC 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 26
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PkrI GCNGC 2 cut(s) 47, 371
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 3 cut(s) 60, 268, 320
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 363
Rsr2I CGGWCCG 1 cut(s) 320
RsrII CGGWCCG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 388
SatI GCNGC 2 cut(s) 46, 370
Sau3AI GATC 2 cut(s) 36, 227
Sau96I GGNCC 3 cut(s) 60, 268, 320
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 109, 187
SetI ASST 4 cut(s) 11, 47, 141, 150
SfaNI GCATC 2 cut(s) 180, 364
SfcI CTRYAG 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 26
SinI GGWCC 2 cut(s) 60, 320
SlaI CTCGAG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 26, 299
SmoI CTYRAG 2 cut(s) 26, 299
Sse9I AATT 1 cut(s) 334
SsiI CCGC 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 107, 185
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 334
TatI WGTACW 1 cut(s) 276
Tru1I TTAA 1 cut(s) 388
Tru9I TTAA 1 cut(s) 388
TscAI CASTG 2 cut(s) 59, 202
TseI GCWGC 2 cut(s) 45, 369
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 2 cut(s) 59, 202
VpaK11BI GGWCC 2 cut(s) 60, 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.