pycom01g16930

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0004292
Physical Location & Seq
Reverse (-)
16354888 .. 16356829
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16930.1

Sequence Viewer

Length: 390 bp
ATGGGGAGGCTATTTGTGGTGAGTCTCGAGGGGAAGATCTACAGCTGCAGGCACTGCCGGACCCATCTTGCTCTTTGTGAGGACATAGTTTCCAGGTCTTTCCACTGCAGGCACGGGAAGGCTTATCTCTTCAAGAAGGTAGTGAATGTATTTTCCGGAGAGTGTGAAGATAGATCGATGATTACTGGACTGCACACAGTTGCTGACATTTTCTGCGTCGGGTGTGGATCGATAGTGGGGTGGAAATATGAGACTGCCCACGACGAGACCCAGAAGTACAAGGAAGGAAAATCCGTACTTGAGCGGGTGAAGGTGTTGGGTCCGGATGGAAAGGATTATTGGGTCAGTCACGAAGCACAAGTCGGTAGCAGCGATGCAGATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

130

Amino Acids

14.43

Weight (kDa)

6.64

Isoelectric Point (pI)

13.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 13 - 104 2.2e-12 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 304
AccIII TCCGGA 2 cut(s) 155, 322
AciI CCGC 1 cut(s) 304
AclWI GGATC 1 cut(s) 235
AfaI GTAC 2 cut(s) 278, 297
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 3 cut(s) 29, 245, 260
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 2 cut(s) 54, 203
Ama87I CYCGRG 1 cut(s) 26
Aor13HI TCCGGA 2 cut(s) 155, 322
ApeKI GCWGC 2 cut(s) 45, 369
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
AspS9I GGNCC 2 cut(s) 60, 320
AsuHPI GGTGA 2 cut(s) 31, 319
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 60, 320
BbvI GCAGC 2 cut(s) 32, 381
BccI CCATC 2 cut(s) 72, 320
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 3 cut(s) 29, 245, 260
BfmI CTRYAG 3 cut(s) 40, 46, 106
BglII AGATCT 1 cut(s) 36
BisI GCNGC 2 cut(s) 46, 370
BlsI GCNGC 2 cut(s) 47, 371
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 2 cut(s) 60, 320
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 60, 320
BmiI GGNNCC 2 cut(s) 62, 321
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 2 cut(s) 364, 373
BpuEI CTTGAG 1 cut(s) 320
Bsa29I ATCGAT 2 cut(s) 176, 230
BsaI GGTCTC 1 cut(s) 260
BsaWI WCCGGW 2 cut(s) 155, 322
Bse1I ACTGG 1 cut(s) 190
BseAI TCCGGA 2 cut(s) 155, 322
BseBI CCWGG 1 cut(s) 94
BseCI ATCGAT 2 cut(s) 176, 230
BseGI GGATG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 2 cut(s) 32, 381
BsgI GTGCAG 1 cut(s) 176
BshVI ATCGAT 2 cut(s) 176, 230
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 58, 156, 323
BsmAI GTCTC 3 cut(s) 29, 245, 260
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 26
Bsp13I TCCGGA 2 cut(s) 155, 322
Bsp143I GATC 3 cut(s) 36, 173, 227
BspACI CCGC 1 cut(s) 304
BspDI ATCGAT 2 cut(s) 176, 230
BspEI TCCGGA 2 cut(s) 155, 322
BspLI GGNNCC 2 cut(s) 62, 321
BspMAI CTGCAG 2 cut(s) 50, 110
BspPI GGATC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 190
BssMI GATC 3 cut(s) 36, 173, 227
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 134
BstAPI GCANNNNNTGC 2 cut(s) 54, 383
BstC8I GCNNGC 2 cut(s) 50, 110
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 3 cut(s) 39, 176, 230
BstMAI GTCTC 3 cut(s) 29, 245, 260
BstMBI GATC 3 cut(s) 36, 173, 227
BstMWI GCNNNNNNNGC 2 cut(s) 54, 383
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 3 cut(s) 40, 46, 106
BstV1I GCAGC 2 cut(s) 32, 381
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
Bsu15I ATCGAT 2 cut(s) 176, 230
BsuTUI ATCGAT 2 cut(s) 176, 230
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 2 cut(s) 52, 103
BtsIMutI CAGTG 2 cut(s) 52, 103
Cac8I GCNNGC 2 cut(s) 50, 110
CaiI CAGNNNCTG 2 cut(s) 54, 203
Cfr13I GGNCC 2 cut(s) 60, 320
ClaI ATCGAT 2 cut(s) 176, 230
CseI GACGC 1 cut(s) 205
Csp6I GTAC 2 cut(s) 277, 296
CviJI RGCY 3 cut(s) 10, 45, 122
CviKI_1 RGCY 3 cut(s) 10, 45, 122
CviQI GTAC 2 cut(s) 277, 296
DpnI GATC 3 cut(s) 38, 175, 229
DpnII GATC 3 cut(s) 36, 173, 227
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 60, 320
Eco88I CYCGRG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 92
FaiI YATR 2 cut(s) 86, 249
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 46, 370
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 2 cut(s) 46, 370
GluI GCNGC 2 cut(s) 46, 370
HapII CCGG 3 cut(s) 58, 156, 323
HgaI GACGC 1 cut(s) 205
HinfI GANTC 1 cut(s) 22
HpaII CCGG 3 cut(s) 58, 156, 323
HphI GGTGA 2 cut(s) 31, 319
Hpy188III TCNNGA 5 cut(s) 26, 133, 156, 323, 350
Hpy99I CGWCG 2 cut(s) 221, 266
HpyAV CCTTC 4 cut(s) 112, 130, 278, 304
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 48, 108, 193, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 383
Kpn2I TCCGGA 2 cut(s) 155, 322
Kzo9I GATC 3 cut(s) 36, 173, 227
LpnPI CCDG 9 cut(s) 34, 71, 79, 94, 106, 169, 171, 284, 336
Lsp1109I GCAGC 2 cut(s) 32, 381
LweI GCATC 2 cut(s) 364, 373
MaeIII GTNAC 1 cut(s) 347
MalI GATC 3 cut(s) 38, 175, 229
MbiI CCGCTC 1 cut(s) 304
MboI GATC 3 cut(s) 36, 173, 227
MboII GAAGA 3 cut(s) 46, 121, 179
MflI RGATCY 1 cut(s) 36
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 2 cut(s) 22, 73
MroI TCCGGA 2 cut(s) 155, 322
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 3 cut(s) 58, 156, 323
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 54, 383
NdeII GATC 3 cut(s) 36, 173, 227
NlaIV GGNNCC 2 cut(s) 62, 321
NmuCI GTSAC 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PkrI GCNGC 2 cut(s) 47, 371
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 62, 321
PspPI GGNCC 2 cut(s) 60, 320
PstI CTGCAG 2 cut(s) 50, 110
PstNI CAGNNNCTG 2 cut(s) 54, 203
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 2 cut(s) 278, 297
RsaNI GTAC 2 cut(s) 277, 296
SatI GCNGC 2 cut(s) 46, 370
Sau3AI GATC 3 cut(s) 36, 173, 227
Sau96I GGNCC 2 cut(s) 60, 320
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 94
SetI ASST 4 cut(s) 47, 98, 141, 315
SfaNI GCATC 2 cut(s) 364, 373
SfcI CTRYAG 3 cut(s) 40, 46, 106
Sfr274I CTCGAG 1 cut(s) 26
SinI GGWCC 2 cut(s) 60, 320
SlaI CTCGAG 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 26, 299
SmoI CTYRAG 2 cut(s) 26, 299
SsiI CCGC 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 3 cut(s) 27, 176, 230
TatI WGTACW 1 cut(s) 276
TscAI CASTG 2 cut(s) 59, 110
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 2 cut(s) 45, 369
Tsp45I GTSAC 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 2 cut(s) 59, 110
VpaK11BI GGWCC 2 cut(s) 60, 320
XhoI CTCGAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.