FvH4_7g24340

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004292
Physical Location & Seq
Reverse (-)
18805153 .. 18807866
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24340.t4

Sequence Viewer

Length: 390 bp
ATGGGAAGGCTGTTTGTGCTGAGTCTTGAGGGGAAGATCTATAGCTGCAAGCACTGCCGGACCCATCTTGCTCTGAGTGAAGACATAGTTTCCAAGTCTTTCCAGAGCAGGCATGGGAAGGCTTATCTCTTCGGTAAAGTAGTGAATGTAACTTGTGGGGAGACTGAAGAGAGAGCGATGATGACAGGGCTGCACACAGTCGCTGACATATTCTGTGTTGGGTGTGGATCAATAGTGGGGTGGAAATATGAGACTGCTCATGACAAGAGCCAGAAGTACAAGGAAGGAAAATCCGTCCTTGAGCGGGTGAAGATATCTGGTCCGGAAGGAAACAATTATTGGGTCAGTCATGGAGGGCATATCGGCAGCAGCGATGCAGATGACGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

130

Amino Acids

14.17

Weight (kDa)

7.69

Isoelectric Point (pI)

17.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 32 - 98 3.8e-08 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 304
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 1 cut(s) 304
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 304
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 155, 245
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 322
ApeKI GCWGC 4 cut(s) 45, 190, 366, 369
AspS9I GGNCC 2 cut(s) 60, 320
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 60, 320
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 32, 177, 378, 381
BccI CCATC 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 155, 245
BfmI CTRYAG 1 cut(s) 40
BglII AGATCT 1 cut(s) 36
BisI GCNGC 4 cut(s) 46, 191, 367, 370
BlsI GCNGC 4 cut(s) 47, 192, 368, 371
Bme18I GGWCC 2 cut(s) 60, 320
BmgT120I GGNCC 2 cut(s) 60, 320
BmiI GGNNCC 1 cut(s) 62
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 47, 320
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 304
BseAI TCCGGA 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 2 cut(s) 11, 65
BseXI GCAGC 4 cut(s) 32, 177, 378, 381
BsgI GTGCAG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 58, 323
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 2 cut(s) 155, 245
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 2 cut(s) 36, 227
BspACI CCGC 1 cut(s) 304
BspCNI CTCAG 2 cut(s) 12, 66
BspEI TCCGGA 1 cut(s) 322
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 304
BssMI GATC 2 cut(s) 36, 227
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 134, 162
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 50, 110
BstDEI CTNAG 2 cut(s) 20, 74
BstKTI GATC 2 cut(s) 39, 230
BstMAI GTCTC 2 cut(s) 155, 245
BstMBI GATC 2 cut(s) 36, 227
BstMWI GCNNNNNNNGC 3 cut(s) 16, 54, 383
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 4 cut(s) 32, 177, 378, 381
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 191
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 50, 110
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 60, 320
Csp6I GTAC 1 cut(s) 277
CviAII CATG 3 cut(s) 113, 260, 350
CviJI RGCY 5 cut(s) 10, 45, 122, 190, 270
CviKI_1 RGCY 5 cut(s) 10, 45, 122, 190, 270
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 20, 74
DpnI GATC 2 cut(s) 38, 229
DpnII GATC 2 cut(s) 36, 227
Eam1104I CTCTTC 2 cut(s) 134, 162
EarI CTCTTC 2 cut(s) 134, 162
Eco32I GATATC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 60, 320
Eco57I CTGAAG 1 cut(s) 186
EcoRV GATATC 1 cut(s) 315
FaeI CATG 3 cut(s) 116, 263, 353
FaiI YATR 8 cut(s) 42, 86, 114, 209, 249, 261, 351, 360
FatI CATG 3 cut(s) 112, 259, 349
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 4 cut(s) 46, 191, 367, 370
Fsp4HI GCNGC 4 cut(s) 46, 191, 367, 370
GluI GCNGC 4 cut(s) 46, 191, 367, 370
HapII CCGG 2 cut(s) 58, 323
Hin1II CATG 3 cut(s) 116, 263, 353
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 58, 323
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 4 cut(s) 26, 103, 260, 323
HpyAV CCTTC 3 cut(s) 112, 278, 320
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 48, 193, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 54, 383
HpyF3I CTNAG 2 cut(s) 20, 74
Hsp92II CATG 3 cut(s) 116, 263, 353
Kpn2I TCCGGA 1 cut(s) 322
Kzo9I GATC 2 cut(s) 36, 227
LpnPI CCDG 7 cut(s) 71, 94, 116, 171, 284, 303, 336
Lsp1109I GCAGC 4 cut(s) 32, 177, 378, 381
LweI GCATC 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 38, 229
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 36, 227
MboII GAAGA 5 cut(s) 46, 92, 121, 179, 322
MflI RGATCY 1 cut(s) 36
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 2 cut(s) 22, 347
MroI TCCGGA 1 cut(s) 322
MspI CCGG 2 cut(s) 58, 323
MwoI GCNNNNNNNGC 3 cut(s) 16, 54, 383
NdeII GATC 2 cut(s) 36, 227
NlaIII CATG 3 cut(s) 116, 263, 353
NlaIV GGNNCC 1 cut(s) 62
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PkrI GCNGC 4 cut(s) 47, 192, 368, 371
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 60, 320
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SatI GCNGC 4 cut(s) 46, 191, 367, 370
Sau3AI GATC 2 cut(s) 36, 227
Sau96I GGNCC 2 cut(s) 60, 320
SchI GAGTC 1 cut(s) 31
SetI ASST 1 cut(s) 47
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 2 cut(s) 60, 320
SmlI CTYRAG 2 cut(s) 26, 299
SmoI CTYRAG 2 cut(s) 26, 299
Sse9I AATT 1 cut(s) 334
SsiI CCGC 1 cut(s) 304
TaaI ACNGT 1 cut(s) 199
TasI AATT 1 cut(s) 334
TatI WGTACW 1 cut(s) 276
TscAI CASTG 1 cut(s) 59
TseI GCWGC 4 cut(s) 45, 190, 366, 369
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 60, 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.