AT3G11230

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004292
Physical Location & Seq
Forward (+)
3516563 .. 3518477
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11230.4

Sequence Viewer

Length: 390 bp
ATGGGGAGATTGTTCTTGGTGAATTTGGAAGGCAAGTCTTACAGTTGTAAGCACTGCAAGACCAATCTTGCTCTCTGTGATGATGTCGTCTCTAAGTCTTTTCAGTCCCGACATGGGAAAGCTTACCTCTTCAGTAAGGTAGTGAATGTGTATGCTGGCAAGAAAGAAGATAGGATGATGATGACGGGAATGCATACGGTGGTCGATATTTACTGTGTCAAATGCGGCTCTTATGTTGGATGGAAATATGAGTTTGCTTTTGAGAAGAATCAAAAGTACAAGGAAGGAAAATCTGTTCTCGAAAGGTACAAGGTCTGGGGTCCAGATGGGAACAATTATTGGGTGGCTCAAGAAGTTGAAGCCGGAGACAGCGATACTGATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

129

Amino Acids

14.75

Weight (kDa)

8.21

Isoelectric Point (pI)

13.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 101 2.4e-11 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 115
AfaI GTAC 2 cut(s) 278, 308
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 1 cut(s) 359
AloI GAACNNNNNNTCC 2 cut(s) 279, 311
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 94, 360
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 320
BccI CCATC 2 cut(s) 234, 320
BcoDI GTCTC 2 cut(s) 94, 360
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 321
BmsI GCATC 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 180, 245
BseLI CCNNNNNNNGG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 363
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 94, 360
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 195
BspACI CCGC 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 44, 199, 215
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 180, 245
BstMAI GTCTC 2 cut(s) 94, 360
BtsCI GGATG 2 cut(s) 180, 245
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 2 cut(s) 277, 307
CviAII CATG 1 cut(s) 113
CviJI RGCY 4 cut(s) 122, 228, 347, 362
CviKI_1 RGCY 4 cut(s) 122, 228, 347, 362
CviQI GTAC 2 cut(s) 277, 307
DdeI CTNAG 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 1 cut(s) 116
FaiI YATR 5 cut(s) 114, 153, 195, 234, 249
FaqI GGGAC 1 cut(s) 91
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 2 cut(s) 187, 252
Fsp4HI GCNGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 226
HapII CCGG 1 cut(s) 363
Hin1II CATG 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 363
HphI GGTGA 1 cut(s) 31
Hpy188III TCNNGA 4 cut(s) 108, 299, 323, 350
HpyAV CCTTC 2 cut(s) 23, 278
HpyCH4III ACNGT 3 cut(s) 44, 199, 215
HpyCH4V TGCA 2 cut(s) 57, 193
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 1 cut(s) 116
LpnPI CCDG 4 cut(s) 141, 301, 336, 376
LweI GCATC 1 cut(s) 373
MboII GAAGA 3 cut(s) 121, 179, 277
MluCI AATT 2 cut(s) 22, 334
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 195
MspI CCGG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 195
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 321
NsiI ATGCAT 1 cut(s) 195
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 320
RsaI GTAC 2 cut(s) 278, 308
RsaNI GTAC 2 cut(s) 277, 307
SatI GCNGC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 320
SetI ASST 5 cut(s) 124, 129, 141, 308, 315
SfaNI GCATC 1 cut(s) 373
SinI GGWCC 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 2 cut(s) 22, 334
SsiI CCGC 1 cut(s) 225
TaaI ACNGT 3 cut(s) 44, 199, 215
TaqI TCGA 2 cut(s) 204, 300
TasI AATT 2 cut(s) 22, 334
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 1 cut(s) 59
TspRI CASTG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.