AT2G40260
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012871
Physical Location & Seq
Reverse (-)
16816530 .. 16818730
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40260.1

Sequence Viewer

Length: 1233 bp
ATGAGATCAAGCAGCCAAAATTCTGAAAACTCCAAGACTTGTCTATCTAACAACATCAAAGCAACCACCAAGAATGAAGAAGATAAAGATGAAGAGGATGATGAAGAAGGCGAAGAGGATGAAGAAGAGAGATCTGGAGATCAGAGCCCATCTAGCAATAGCTATGAGGAAGAGAGTGGGAGTCACCACCATGATCAGAACAAGAAGAATGGAGGATCCGTGAGGCCGTACAACCGCTCAAAGACTCCGAGGCTGCGATGGACGCCGGAGCTCCATATTTGCTTTCTTCAAGCTGTGGAGAGATTGGGTGGCCCAGATAGAGCAACACCGAAGCTTGTTCTCCAATTGATGAACGTCAAGGGGCTAAGTATTGCCCATGTTAAGAGTCATCTTCAGATGTACAGAAGCAAGAAGACCGATGAGCCTAATGAAGGAGATCAAGGATTTTCGTTTGAACACGGAGCTGGTTACACTTACAACCTTAGCCAACTTCCAATGCTACAAAGTTTTGATCAAAGGCCTTCTTCTAGTTTAGGATATGGTGGTGGTTCGTGGACTGACCACAGACGACAGATCTACCGTAGCCCTTGGAGAGGATTAACGACACGAGAAAATACAAGAACAAGACAAACAATGTTTAGCTCACAGCCTGGTGAGAGATATCACGGAGTTAGCAATAGTATTCTTAACGATAAGAACAAAACTATTTCATTTCGAATCAATTCTCATGAAGGGGTTCATGATAACAATGGAGTAGCTGGAGCTGTTCCAAGAATTCATAGAAGTTTTCTTGAAGGTATGAAAACGTTTAACAAATCATGGGGACAGAGCCTCTCTTCCAATCTTAAGTCCTCCACCGCAACAATACCACAAGATCATATTGCTACAACGCTAAATTCTTATCAATGGGAGAATGCTGGAGTGGCAGAAGGATCAGAGAATGTTTTGAAGAGGAAGAGGTTATTATTTTCTGATGACTGCAATAAGTCAGACCAAGATTTGGATCTAAGCTTGTCCCTTAAGGTACCTCGGACACACGACAATCTTGGAGAATGCTTGTTAGAAGATGAAGTAAAAGAACATGATGATCATCAAGATATCAAGAGTTTGTCTCTTTCGTTATCATCTTCAGGTTCATCAAAACTCGACCGAACCATTAGGAAAGAAGATCAAACTGATCACAAAAAGAGAAAGATTTCGGTCTTGGCAAGTCCCCTTGATCTCACTCTGTGA

Protein Analysis

410

Amino Acids

46.23

Weight (kDa)

6.29

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 84 - 135 1.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 1024
AccB7I CCANNNNNTGG 1 cut(s) 1000
AccBSI CCGCTC 1 cut(s) 237
AciI CCGC 2 cut(s) 235, 858
AclI AACGTT 1 cut(s) 806
AclWI GGATC 4 cut(s) 210, 223, 940, 1011
AcsI RAATTY 3 cut(s) 19, 774, 895
AcuI CTGAAG 2 cut(s) 377, 1113
AcyI GRCGYC 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 1230
AfaI GTAC 3 cut(s) 230, 401, 1026
AfiI CCNNNNNNNGG 3 cut(s) 431, 593, 1000
AflII CTTAAG 2 cut(s) 845, 1019
AgsI TTSAA 4 cut(s) 290, 455, 794, 949
AjnI CCWGG 1 cut(s) 649
AluBI AGCT 9 cut(s) 162, 271, 293, 334, 464, 642, 758, 764, 1011
AluI AGCT 9 cut(s) 162, 271, 293, 334, 464, 642, 758, 764, 1011
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 1116
AlwI GGATC 4 cut(s) 210, 223, 940, 1011
AoxI GGCC 3 cut(s) 224, 310, 518
ApeKI GCWGC 2 cut(s) 12, 253
ApoI RAATTY 3 cut(s) 19, 774, 895
Asp700I GAANNNNTTC 3 cut(s) 721, 735, 1195
Asp718I GGTACC 1 cut(s) 1024
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 176, 665
AsuII TTCGAA 1 cut(s) 715
BamHI GGATCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 1024
BanII GRGCYC 2 cut(s) 149, 273
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 24, 240
BccI CCATC 2 cut(s) 157, 252
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 651
BclI TGATCA 4 cut(s) 193, 511, 1087, 1177
BcoDI GTCTC 1 cut(s) 1116
BfaI CTAG 2 cut(s) 153, 528
BfrI CTTAAG 2 cut(s) 845, 1019
BglII AGATCT 2 cut(s) 131, 573
BisI GCNGC 2 cut(s) 13, 254
BlsI GCNGC 2 cut(s) 14, 255
Bme1390I CCNGG 1 cut(s) 651
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 217, 1026
BmrFI CCNGG 1 cut(s) 651
BpiI GAAGAC 1 cut(s) 419
BplI GAGNNNNNCTC 2 cut(s) 1096, 1128
BpmI CTGGAG 3 cut(s) 156, 780, 939
Bpu10I CCTNAGC 1 cut(s) 482
Bpu14I TTCGAA 1 cut(s) 715
BsaBI GATNNNNATC 2 cut(s) 1002, 1089
BsaHI GRCGYC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 248, 587, 1028
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 593, 1000
Bse8I GATNNNNATC 2 cut(s) 1002, 1089
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 3 cut(s) 248, 587, 1028
BseGI GGATG 2 cut(s) 103, 124
BseJI GATNNNNATC 2 cut(s) 1002, 1089
BseLI CCNNNNNNNGG 3 cut(s) 431, 593, 1000
BseXI GCAGC 2 cut(s) 24, 240
Bsh1285I CGRYCG 1 cut(s) 1150
BshFI GGCC 3 cut(s) 226, 312, 520
BshNI GGYRCC 1 cut(s) 1024
BsiEI CGRYCG 1 cut(s) 1150
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 3 cut(s) 837, 1000, 1197
BslI CCNNNNNNNGG 3 cut(s) 431, 593, 1000
BsmAI GTCTC 1 cut(s) 1116
BsmFI GGGAC 3 cut(s) 837, 1000, 1197
BsmI GAATGC 2 cut(s) 919, 1058
BsnI GGCC 3 cut(s) 226, 312, 520
Bsp119I TTCGAA 1 cut(s) 715
Bsp1286I GDGCHC 2 cut(s) 149, 273
Bsp1407I TGTACA 1 cut(s) 399
BspACI CCGC 2 cut(s) 235, 858
BspANI GGCC 3 cut(s) 226, 312, 520
BspHI TCATGA 2 cut(s) 727, 739
BspLI GGNNCC 2 cut(s) 217, 1026
BspPI GGATC 4 cut(s) 210, 223, 940, 1011
BspT104I TTCGAA 1 cut(s) 715
BspT107I GGYRCC 1 cut(s) 1024
BspTI CTTAAG 2 cut(s) 845, 1019
BsrBI CCGCTC 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 248, 587, 1028
BssNI GRCGYC 1 cut(s) 263
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 587
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 1 cut(s) 581
Bst6I CTCTTC 7 cut(s) 87, 108, 120, 165, 841, 944, 950
BstACI GRCGYC 1 cut(s) 263
BstAFI CTTAAG 2 cut(s) 845, 1019
BstAUI TGTACA 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 715
BstDEI CTNAG 3 cut(s) 365, 482, 1007
BstENI CCTNNNNNAGG 2 cut(s) 429, 591
BstF5I GGATG 2 cut(s) 103, 124
BstMAI GTCTC 1 cut(s) 1116
BstMCI CGRYCG 1 cut(s) 1150
BstMWI GCNNNNNNNGC 3 cut(s) 153, 262, 923
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 649
BstV1I GCAGC 2 cut(s) 24, 240
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 4 cut(s) 131, 215, 573, 1003
BstYI RGATCY 4 cut(s) 131, 215, 573, 1003
BsuRI GGCC 3 cut(s) 226, 312, 520
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 2 cut(s) 103, 124
CciI TCATGA 2 cut(s) 727, 739
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 271
Csp6I GTAC 3 cut(s) 229, 400, 1025
CviAII CATG 6 cut(s) 191, 377, 728, 740, 819, 1082
CviQI GTAC 3 cut(s) 229, 400, 1025
DdeI CTNAG 3 cut(s) 365, 482, 1007
DraIII CACNNNGTG 1 cut(s) 1230
Eam1104I CTCTTC 7 cut(s) 87, 108, 120, 165, 841, 944, 950
EarI CTCTTC 7 cut(s) 87, 108, 120, 165, 841, 944, 950
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 587
Eco147I AGGCCT 1 cut(s) 520
Eco24I GRGCYC 2 cut(s) 149, 273
Eco32I GATATC 2 cut(s) 662, 1099
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 377, 1113
EcoICRI GAGCTC 1 cut(s) 271
EcoNI CCTNNNNNAGG 2 cut(s) 429, 591
EcoRI GAATTC 1 cut(s) 774
EcoRII CCWGG 1 cut(s) 649
EcoRV GATATC 2 cut(s) 662, 1099
EcoT14I CCWWGG 1 cut(s) 587
EcoT38I GRGCYC 2 cut(s) 149, 273
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 6 cut(s) 194, 380, 731, 743, 822, 1085
FalI AAGNNNNNCTT 2 cut(s) 508, 540
FaqI GGGAC 3 cut(s) 837, 1000, 1197
FatI CATG 6 cut(s) 190, 376, 727, 739, 818, 1081
FbaI TGATCA 4 cut(s) 193, 511, 1087, 1177
Fnu4HI GCNGC 2 cut(s) 13, 254
FokI GGATG 2 cut(s) 110, 131
FriOI GRGCYC 2 cut(s) 149, 273
Fsp4HI GCNGC 2 cut(s) 13, 254
FspBI CTAG 2 cut(s) 153, 528
GluI GCNGC 2 cut(s) 13, 254
GsuI CTGGAG 3 cut(s) 156, 780, 939
HaeIII GGCC 3 cut(s) 226, 312, 520
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 6 cut(s) 194, 380, 731, 743, 822, 1085
HindIII AAGCTT 2 cut(s) 332, 1009
HinfI GANTC 4 cut(s) 181, 244, 385, 717
HpaII CCGG 1 cut(s) 266
HphI GGTGA 2 cut(s) 176, 665
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 9 cut(s) 25, 144, 198, 249, 396, 937, 973, 991, 1032
Hpy188III TCNNGA 6 cut(s) 135, 728, 740, 791, 1094, 1102
Hpy8I GTNNAC 1 cut(s) 555
HpyAV CCTTC 6 cut(s) 101, 425, 531, 725, 788, 923
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4IV ACGT 2 cut(s) 354, 806
HpyCH4V TGCA 1 cut(s) 981
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 262, 923
HpyF3I CTNAG 3 cut(s) 365, 482, 1007
HpySE526I ACGT 2 cut(s) 354, 806
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 6 cut(s) 194, 380, 731, 743, 822, 1085
KpnI GGTACC 1 cut(s) 1028
Ksp22I TGATCA 4 cut(s) 193, 511, 1087, 1177
LmnI GCTCC 4 cut(s) 268, 276, 461, 761
LpnPI CCDG 9 cut(s) 120, 279, 327, 450, 636, 663, 744, 903, 1116
Lsp1109I GCAGC 2 cut(s) 24, 240
MaeI CTAG 2 cut(s) 153, 528
MaeII ACGT 2 cut(s) 354, 806
MaeIII GTNAC 2 cut(s) 182, 467
MbiI CCGCTC 1 cut(s) 237
MfeI CAATTG 1 cut(s) 344
MflI RGATCY 4 cut(s) 131, 215, 573, 1003
MhlI GDGCHC 2 cut(s) 149, 273
MluCI AATT 5 cut(s) 19, 344, 721, 774, 895
MlyI GAGTC 3 cut(s) 190, 238, 394
MroXI GAANNNNTTC 3 cut(s) 721, 735, 1195
MseI TTAA 6 cut(s) 381, 599, 687, 810, 846, 1020
MslI CAYNNNNRTG 1 cut(s) 189
MspCI CTTAAG 2 cut(s) 845, 1019
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 651
MunI CAATTG 1 cut(s) 344
Mva1269I GAATGC 2 cut(s) 919, 1058
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 3 cut(s) 153, 262, 923
NlaIII CATG 6 cut(s) 194, 380, 731, 743, 822, 1085
NlaIV GGNNCC 2 cut(s) 217, 1026
NmuCI GTSAC 1 cut(s) 182
NspV TTCGAA 1 cut(s) 715
PagI TCATGA 2 cut(s) 727, 739
PceI AGGCCT 1 cut(s) 520
PctI GAATGC 2 cut(s) 919, 1058
PdmI GAANNNNTTC 3 cut(s) 721, 735, 1195
PfeI GAWTC 1 cut(s) 717
PflMI CCANNNNNTGG 1 cut(s) 1000
PkrI GCNGC 2 cut(s) 14, 255
PleI GAGTC 3 cut(s) 189, 238, 393
PpsI GAGTC 3 cut(s) 189, 238, 393
Psp124BI GAGCTC 1 cut(s) 273
Psp1406I AACGTT 1 cut(s) 806
Psp6I CCWGG 1 cut(s) 649
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 2 cut(s) 217, 1026
PspPI GGNCC 1 cut(s) 311
PsuI RGATCY 4 cut(s) 131, 215, 573, 1003
RsaI GTAC 3 cut(s) 230, 401, 1026
RsaNI GTAC 3 cut(s) 229, 400, 1025
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 6 cut(s) 381, 599, 687, 810, 846, 1020
SatI GCNGC 2 cut(s) 13, 254
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 3 cut(s) 190, 238, 394
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 2 cut(s) 149, 273
SfuI TTCGAA 1 cut(s) 715
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 845, 1019
SmoI CTYRAG 2 cut(s) 845, 1019
Sse9I AATT 5 cut(s) 19, 344, 721, 774, 895
SseBI AGGCCT 1 cut(s) 520
SsiI CCGC 2 cut(s) 235, 858
SspMI CTAG 2 cut(s) 153, 528
SstI GAGCTC 1 cut(s) 273
StuI AGGCCT 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 1 cut(s) 581
TaiI ACGT 2 cut(s) 357, 809
TaqI TCGA 2 cut(s) 715, 1146
TaqII GACCGA 3 cut(s) 431, 1164, 1189
TasI AATT 5 cut(s) 19, 344, 721, 774, 895
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 1 cut(s) 717
Tru1I TTAA 6 cut(s) 381, 599, 687, 810, 846, 1020
Tru9I TTAA 6 cut(s) 381, 599, 687, 810, 846, 1020
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 12, 253
Tsp45I GTSAC 1 cut(s) 182
TspGWI ACGGA 3 cut(s) 208, 474, 681
Van91I CCANNNNNTGG 1 cut(s) 1000
Vha464I CTTAAG 2 cut(s) 845, 1019
XagI CCTNNNNNAGG 2 cut(s) 429, 591
XapI RAATTY 3 cut(s) 19, 774, 895
XmnI GAANNNNTTC 3 cut(s) 721, 735, 1195
XspI CTAG 2 cut(s) 153, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.