Rh1AG368600
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012871
Physical Location & Seq
Reverse (-)
60291567 .. 60293139
1573 bp
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UTR
Exon/CDS
Intron
Rh1AG368600.1

Sequence Viewer

Length: 810 bp
ATGAAGATATCAAGTGAAGGTACCAGTCAAGCTTCTAAAGCAAGTTTATCATCTTCTAGCCAGAGCAAGAAGGAACGTGGTGACGATGAGGAGGTGGTGGATAAGGATAGCCAGCAGCAGCCCAGCAGCAAGAATGGTGTTAGCTCCAGTAGCAGTACCATCGAAGAGAACGAAAAGTCGAAGGGTGCTTCAGGTGGATCTGTACGACCGTATGTGCGTTCCAAGACTTCAAGGCTTCGATGGACTCCTGATCTCCATCTTTGCTTTATTCATGCGGTTGAAAGATTAGGAGGGCAAGAGAGAGCAACACCAAAATTAGTTCTTCAATTGATGAATGTCAAGGGTCTCAGCATAGCTCATGTCAAGAGCCATCTTCAAATGTATAGGAGCAAGAAGATGGAAGACCCAAATCAAGTTCTCTCAGAGCAAGGCTTCTACATTGAAGGTGGAGATAATCATATATACAACCTTACTCAACTCTCCGTGCTACAAAGTTTCAACCACCAATGGCCTTCTTCAGGATTAAGGCAGTCATGGCAAGATCACAGTTGGTTGGACAACAGTATCGCCACTCGAAACACACTGAAAAGAAAGGCTCCGGATTCTTCAGATAATACTTCTAATTTGGATTTGAACTTATCACTGAAAGTTCCAGCAACAGAAGAAAAGGTGCTGGGATTTGGTCTGTCTCTTTCTCTTTCTCCAGCTTCAGCGTCCTCGAAGCTCGGCTTGATGAAGAAGCTAGAAGGTAATGGTGGCCATGATAGGGAGCATGGGAGAAAGGCAAGTACTCTGGACCTCACTCTATGA

Protein Analysis

269

Amino Acids

29.52

Weight (kDa)

9.18

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 78 - 129 1.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 757
AcuI CTGAAG 4 cut(s) 174, 501, 591, 693
AfaI GTAC 4 cut(s) 22, 157, 204, 790
AfiI CCNNNNNNNGG 2 cut(s) 518, 766
AgsI TTSAA 7 cut(s) 231, 281, 326, 377, 443, 499, 634
AluBI AGCT 6 cut(s) 32, 144, 356, 707, 724, 742
AluI AGCT 6 cut(s) 32, 144, 356, 707, 724, 742
Alw26I GTCTC 2 cut(s) 350, 693
AlwI GGATC 1 cut(s) 205
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 2 cut(s) 509, 757
ApeKI GCWGC 3 cut(s) 115, 118, 126
Asp718I GGTACC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 796
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 796
BaeI ACNNNNGTAYC 2 cut(s) 547, 580
BalI TGGCCA 1 cut(s) 759
BanI GGYRCC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 127, 130, 138
BccI CCATC 5 cut(s) 167, 234, 264, 378, 391
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcoDI GTCTC 2 cut(s) 350, 693
BfaI CTAG 2 cut(s) 57, 743
BisI GCNGC 3 cut(s) 116, 119, 127
BlsI GCNGC 3 cut(s) 117, 120, 128
BmcAI AGTACT 1 cut(s) 790
Bme18I GGWCC 1 cut(s) 796
BmgT120I GGNCC 1 cut(s) 796
BmiI GGNNCC 2 cut(s) 22, 597
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 2 cut(s) 130, 687
BsaBI GATNNNNATC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 598
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 766
Bse1I ACTGG 2 cut(s) 24, 147
Bse8I GATNNNNATC 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 598
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 518, 766
BseMII CTCAG 2 cut(s) 361, 435
BseNI ACTGG 2 cut(s) 24, 147
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 127, 130, 138
BseYI CCCAGC 2 cut(s) 122, 673
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 2 cut(s) 511, 759
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 518, 766
BsmAI GTCTC 2 cut(s) 350, 693
BsnI GGCC 2 cut(s) 511, 759
Bso31I GGTCTC 1 cut(s) 350
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 3 cut(s) 197, 250, 541
BspACI CCGC 1 cut(s) 275
BspANI GGCC 2 cut(s) 511, 759
BspCNI CTCAG 2 cut(s) 360, 434
BspEI TCCGGA 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 22, 597
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 350
BsrI ACTGG 2 cut(s) 24, 147
BssMI GATC 3 cut(s) 197, 250, 541
Bst4CI ACNGT 3 cut(s) 210, 548, 563
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 347, 421
BstENI CCTNNNNNAGG 1 cut(s) 516
BstKTI GATC 3 cut(s) 200, 253, 544
BstMAI GTCTC 2 cut(s) 350, 693
BstMBI GATC 3 cut(s) 197, 250, 541
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 3 cut(s) 38, 150, 535
BstV1I GCAGC 3 cut(s) 127, 130, 138
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 511, 759
BtsIMutI CAGTG 2 cut(s) 581, 641
Cac8I GCNNGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 796
CseI GACGC 1 cut(s) 702
Csp6I GTAC 4 cut(s) 21, 156, 203, 789
CviAII CATG 5 cut(s) 272, 359, 534, 761, 773
CviQI GTAC 4 cut(s) 21, 156, 203, 789
DdeI CTNAG 2 cut(s) 347, 421
DpnI GATC 3 cut(s) 199, 252, 543
DpnII GATC 3 cut(s) 197, 250, 541
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 350
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 4 cut(s) 174, 501, 591, 693
EcoNI CCTNNNNNAGG 1 cut(s) 516
EcoRV GATATC 1 cut(s) 9
FaeI CATG 5 cut(s) 275, 362, 537, 764, 776
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FatI CATG 5 cut(s) 271, 358, 533, 760, 772
Fnu4HI GCNGC 3 cut(s) 116, 119, 127
Fsp4HI GCNGC 3 cut(s) 116, 119, 127
FspBI CTAG 2 cut(s) 57, 743
GluI GCNGC 3 cut(s) 116, 119, 127
GsaI CCCAGC 2 cut(s) 126, 677
GsuI CTGGAG 2 cut(s) 130, 687
HaeIII GGCC 2 cut(s) 511, 759
HapII CCGG 1 cut(s) 599
HgaI GACGC 1 cut(s) 702
Hin1II CATG 5 cut(s) 275, 362, 537, 764, 776
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 2 cut(s) 244, 602
HpaII CCGG 1 cut(s) 599
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 2 cut(s) 424, 610
Hpy188III TCNNGA 5 cut(s) 248, 364, 519, 599, 794
HpyAV CCTTC 6 cut(s) 11, 64, 175, 437, 522, 740
HpyCH4III ACNGT 3 cut(s) 210, 548, 563
HpyCH4IV ACGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 150, 535
HpyF3I CTNAG 2 cut(s) 347, 421
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 5 cut(s) 275, 362, 537, 764, 776
Kpn2I TCCGGA 1 cut(s) 598
KpnI GGTACC 1 cut(s) 24
Kzo9I GATC 3 cut(s) 197, 250, 541
LmnI GCTCC 4 cut(s) 149, 387, 601, 769
Lsp1109I GCAGC 3 cut(s) 127, 130, 138
MaeI CTAG 2 cut(s) 57, 743
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 80
MalI GATC 3 cut(s) 199, 252, 543
MboI GATC 3 cut(s) 197, 250, 541
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 1 cut(s) 197
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 3 cut(s) 314, 326, 622
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 5 cut(s) 82, 85, 284, 727, 809
Mox20I TGGCCA 1 cut(s) 759
MroI TCCGGA 1 cut(s) 598
MscI TGGCCA 1 cut(s) 759
MseI TTAA 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 759
MspI CCGG 1 cut(s) 599
MunI CAATTG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 38, 150, 535
NdeII GATC 3 cut(s) 197, 250, 541
NlaIII CATG 5 cut(s) 275, 362, 537, 764, 776
NlaIV GGNNCC 2 cut(s) 22, 597
NmeAIII GCCGAG 1 cut(s) 705
NmuCI GTSAC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 602
PkrI GCNGC 3 cut(s) 117, 120, 128
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspFI CCCAGC 2 cut(s) 122, 673
PspN4I GGNNCC 2 cut(s) 22, 597
PspPI GGNCC 1 cut(s) 796
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 4 cut(s) 22, 157, 204, 790
RsaNI GTAC 4 cut(s) 21, 156, 203, 789
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 3 cut(s) 116, 119, 127
Sau3AI GATC 3 cut(s) 197, 250, 541
Sau96I GGNCC 1 cut(s) 796
ScaI AGTACT 1 cut(s) 790
SchI GAGTC 1 cut(s) 238
SinI GGWCC 1 cut(s) 796
Sse9I AATT 3 cut(s) 314, 326, 622
SsiI CCGC 1 cut(s) 275
SspMI CTAG 2 cut(s) 57, 743
TaaI ACNGT 3 cut(s) 210, 548, 563
TaiI ACGT 1 cut(s) 79
TaqI TCGA 5 cut(s) 162, 179, 238, 574, 719
TasI AATT 3 cut(s) 314, 326, 622
TatI WGTACW 1 cut(s) 788
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 2 cut(s) 588, 648
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 3 cut(s) 115, 118, 126
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 17, 260, 347, 749
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 2 cut(s) 588, 648
VpaK11BI GGWCC 1 cut(s) 796
XagI CCTNNNNNAGG 1 cut(s) 516
XspI CTAG 2 cut(s) 57, 743
ZrmI AGTACT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.