Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009615.1

Orthogroup ID

OG0012871

Physical Location & Seq

Genomic Coordinates Reverse (-)

10303 .. 11875

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009615.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgaagatatcaagtgaaggtaccagtcaagcttctaaagcaagtttatcatcttctagccagagcaagaaggaacgtggtgacgatgaggaggtggtggataaggatagccagcagcagcccagcagcaagaatggtgttagctccagtagcagcaccatcgaagagaacgaaaagtcgaagggtgcttcaggtggatctgtacgacagtatgtgcgttccaagacttcaaggcttagatggactcctgatctccatctttgctttattcatgcggttgaaagattaggagggcaagagagagcaacaccaaaattagttcttcaattgatgaatgtcaagggtctcagcatagctcatgtcaagagccatcttcaaatgtataggagcaagaagatggaagacccaaatcaagttctctcacagcaaggcttctacattgaaggtggagataatcatatatacaaccttactcaactctccgtgctacaaagtttcaaccaccaatggccttcttcaggattaagatatggtgctgatgcctcttggcgtggccgccacgacgacgaccaccaccagatttacagcccttacagtaatacaggcaggactcaactatttgatcatcataatacaagagttacaggactttatggttcagttgctgagagaatatttggaagcaacaacaccagtactagtacaactactactactgctactacatcgaacaatattcaatcacatacaactcatattccatccacttggagatcaaggcatcaaattagtactcgagtccacaacgaggtccgacccttcaacaggcagtcatggcaagatcacagttggttggacaacagtatcgccactcgaaacacactgaaaagaaaggctccggattcttcagataatacttctaatttggatttgaacttatcactgaaagttccagcaacagaagaaaaagtactgggatttggtctgtctctttctctttctccagcttcagcgtcctcgaagctcggcttgatgaagaagctagaaggtaatggtggtcatgatagggagcatgggagaaaggcaagtactctggacctcactctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

369

Amino Acids

40.94

Weight (kDa)

9.5

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40260 AT2G40260
fragaria_vesca	FvH4_7g24880
malus_domestica	MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica	Prupe.2G253700_v2.0.a1
pyrus_communis	pycom01g17330
rosa_chinensis	RchiOBHm_Chr1g0370761
rosa_laevigata	RLG00000027012
rosa_multiflora	Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286260
rosa_rugosa	Rorug01G0359400
rosa_samantha	Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana	Rw1G032450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	20
AccIII	TCCGGA	1 cut(s)	898
AciI	CCGC	2 cut(s)	275, 556
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	553
AcuI	CTGAAG	4 cut(s)	174, 501, 891, 993
AfaI	GTAC	7 cut(s)	22, 204, 697, 703, 793, 972, 1090
AfiI	CCNNNNNNNGG	3 cut(s)	518, 808, 825
AgsI	TTSAA	9 cut(s)	231, 281, 326, 377, 443, 499, 740, 823, 934
AhlI	ACTAGT	1 cut(s)	698
AluBI	AGCT	6 cut(s)	32, 144, 356, 1007, 1024, 1042
AluI	AGCT	6 cut(s)	32, 144, 356, 1007, 1024, 1042
Alw26I	GTCTC	2 cut(s)	350, 993
AlwI	GGATC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	795
Aor13HI	TCCGGA	1 cut(s)	898
AoxI	GGCC	2 cut(s)	509, 553
ApeKI	GCWGC	4 cut(s)	115, 118, 126, 153
Asp718I	GGTACC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	811, 1096
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	795
AvaII	GGWCC	2 cut(s)	811, 1096
BaeI	ACNNNNGTAYC	2 cut(s)	847, 880
BanI	GGYRCC	1 cut(s)	20
BarI	GAAGNNNNNNTAC	2 cut(s)	954, 986
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	127, 130, 138, 165
BccI	CCATC	6 cut(s)	167, 234, 264, 378, 391, 769
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	350, 993
BcuI	ACTAGT	1 cut(s)	698
BfaI	CTAG	3 cut(s)	57, 699, 1043
BisI	GCNGC	5 cut(s)	116, 119, 127, 154, 556
BlsI	GCNGC	5 cut(s)	117, 120, 128, 155, 557
BmcAI	AGTACT	4 cut(s)	697, 793, 972, 1090
Bme18I	GGWCC	2 cut(s)	811, 1096
BmeT110I	CYCGRG	1 cut(s)	795
BmgT120I	GGNCC	2 cut(s)	811, 1096
BmiI	GGNNCC	2 cut(s)	22, 897
BmrI	ACTGGG	1 cut(s)	983
BmsI	GCATC	2 cut(s)	529, 790
BmuI	ACTGGG	1 cut(s)	983
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	2 cut(s)	130, 987
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	898
Bsc4I	CCNNNNNNNGG	3 cut(s)	518, 808, 825
Bse1I	ACTGG	4 cut(s)	24, 147, 693, 978
Bse8I	GATNNNNATC	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	898
BseGI	GGATG	1 cut(s)	761
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	3 cut(s)	518, 808, 825
BseMII	CTCAG	2 cut(s)	361, 657
BseNI	ACTGG	4 cut(s)	24, 147, 693, 978
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	127, 130, 138, 165
BseYI	CCCAGC	1 cut(s)	122
BshFI	GGCC	2 cut(s)	511, 555
BshNI	GGYRCC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	795
BsiSI	CCGG	1 cut(s)	899
BslI	CCNNNNNNNGG	3 cut(s)	518, 808, 825
BsmAI	GTCTC	2 cut(s)	350, 993
BsnI	GGCC	2 cut(s)	511, 555
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	795
Bsp13I	TCCGGA	1 cut(s)	898
Bsp143I	GATC	5 cut(s)	197, 250, 622, 773, 841
BspACI	CCGC	2 cut(s)	275, 556
BspANI	GGCC	2 cut(s)	511, 555
BspCNI	CTCAG	2 cut(s)	360, 658
BspEI	TCCGGA	1 cut(s)	898
BspHI	TCATGA	1 cut(s)	1060
BspLI	GGNNCC	2 cut(s)	22, 897
BspPI	GGATC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	350
BsrI	ACTGG	4 cut(s)	24, 147, 693, 978
BssMI	GATC	5 cut(s)	197, 250, 622, 773, 841
Bst4CI	ACNGT	4 cut(s)	210, 596, 848, 863
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	3 cut(s)	236, 347, 666
BstENI	CCTNNNNNAGG	2 cut(s)	516, 823
BstF5I	GGATG	1 cut(s)	761
BstKTI	GATC	5 cut(s)	200, 253, 625, 776, 844
BstMAI	GTCTC	2 cut(s)	350, 993
BstMBI	GATC	5 cut(s)	197, 250, 622, 773, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 150, 835
BstV1I	GCAGC	4 cut(s)	127, 130, 138, 165
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	511, 555
BtsCI	GGATG	1 cut(s)	761
BtsIMutI	CAGTG	2 cut(s)	881, 941
Cac8I	GCNNGC	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	665
CciI	TCATGA	1 cut(s)	1060
Cfr13I	GGNCC	2 cut(s)	811, 1096
CseI	GACGC	1 cut(s)	1002
Csp6I	GTAC	7 cut(s)	21, 203, 696, 702, 792, 971, 1089
CviAII	CATG	5 cut(s)	272, 359, 834, 1061, 1073
CviQI	GTAC	7 cut(s)	21, 203, 696, 702, 792, 971, 1089
DdeI	CTNAG	3 cut(s)	236, 347, 666
DpnI	GATC	5 cut(s)	199, 252, 624, 775, 843
DpnII	GATC	5 cut(s)	197, 250, 622, 773, 841
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	350
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	811, 1096
Eco57I	CTGAAG	4 cut(s)	174, 501, 891, 993
Eco88I	CYCGRG	1 cut(s)	795
EcoNI	CCTNNNNNAGG	2 cut(s)	516, 823
EcoRV	GATATC	1 cut(s)	9
FaeI	CATG	5 cut(s)	275, 362, 837, 1064, 1076
FalI	AAGNNNNNCTT	2 cut(s)	1013, 1045
FatI	CATG	5 cut(s)	271, 358, 833, 1060, 1072
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	5 cut(s)	116, 119, 127, 154, 556
FokI	GGATG	1 cut(s)	748
Fsp4HI	GCNGC	5 cut(s)	116, 119, 127, 154, 556
FspBI	CTAG	3 cut(s)	57, 699, 1043
GluI	GCNGC	5 cut(s)	116, 119, 127, 154, 556
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	2 cut(s)	130, 987
HaeIII	GGCC	2 cut(s)	511, 555
HapII	CCGG	1 cut(s)	899
HgaI	GACGC	1 cut(s)	1002
Hin1II	CATG	5 cut(s)	275, 362, 837, 1064, 1076
HindIII	AAGCTT	1 cut(s)	30
HinfI	GANTC	4 cut(s)	244, 610, 798, 902
HpaII	CCGG	1 cut(s)	899
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	2 cut(s)	815, 910
Hpy188III	TCNNGA	6 cut(s)	248, 364, 519, 899, 1061, 1094
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	2 cut(s)	566, 569
HpyAV	CCTTC	7 cut(s)	11, 64, 175, 437, 522, 829, 1040
HpyCH4III	ACNGT	4 cut(s)	210, 596, 848, 863
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 150, 835
HpyF3I	CTNAG	3 cut(s)	236, 347, 666
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	5 cut(s)	275, 362, 837, 1064, 1076
Kpn2I	TCCGGA	1 cut(s)	898
KpnI	GGTACC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	197, 250, 622, 773, 841
LmnI	GCTCC	4 cut(s)	149, 387, 901, 1069
Lsp1109I	GCAGC	4 cut(s)	127, 130, 138, 165
LweI	GCATC	2 cut(s)	529, 790
MaeI	CTAG	3 cut(s)	57, 699, 1043
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	80, 640
MalI	GATC	5 cut(s)	199, 252, 624, 775, 843
MboI	GATC	5 cut(s)	197, 250, 622, 773, 841
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	4 cut(s)	314, 326, 786, 922
MlyI	GAGTC	3 cut(s)	238, 604, 807
MmeI	TCCRAC	2 cut(s)	834, 838
MnlI	CCTC	7 cut(s)	82, 85, 284, 553, 802, 1027, 1109
MroI	TCCGGA	1 cut(s)	898
MseI	TTAA	1 cut(s)	524
MspI	CCGG	1 cut(s)	899
MunI	CAATTG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	38, 150, 835
NdeII	GATC	5 cut(s)	197, 250, 622, 773, 841
NlaIII	CATG	5 cut(s)	275, 362, 837, 1064, 1076
NlaIV	GGNNCC	2 cut(s)	22, 897
NmeAIII	GCCGAG	1 cut(s)	1005
NmuCI	GTSAC	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	795
PagI	TCATGA	1 cut(s)	1060
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	902
PkrI	GCNGC	5 cut(s)	117, 120, 128, 155, 557
PleI	GAGTC	3 cut(s)	238, 604, 806
PpsI	GAGTC	3 cut(s)	238, 604, 806
PspFI	CCCAGC	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	22, 897
PspPI	GGNCC	2 cut(s)	811, 1096
PspXI	VCTCGAGB	1 cut(s)	795
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	7 cut(s)	22, 204, 697, 703, 793, 972, 1090
RsaNI	GTAC	7 cut(s)	21, 203, 696, 702, 792, 971, 1089
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	5 cut(s)	116, 119, 127, 154, 556
Sau3AI	GATC	5 cut(s)	197, 250, 622, 773, 841
Sau96I	GGNCC	2 cut(s)	811, 1096
ScaI	AGTACT	4 cut(s)	697, 793, 972, 1090
SchI	GAGTC	3 cut(s)	238, 604, 807
SfaNI	GCATC	2 cut(s)	529, 790
Sfr274I	CTCGAG	1 cut(s)	795
SinI	GGWCC	2 cut(s)	811, 1096
SlaI	CTCGAG	1 cut(s)	795
SmlI	CTYRAG	1 cut(s)	795
SmoI	CTYRAG	1 cut(s)	795
SpeI	ACTAGT	1 cut(s)	698
Sse9I	AATT	4 cut(s)	314, 326, 786, 922
SsiI	CCGC	2 cut(s)	275, 556
SspI	AATATT	2 cut(s)	675, 736
SspMI	CTAG	3 cut(s)	57, 699, 1043
TaaI	ACNGT	4 cut(s)	210, 596, 848, 863
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	6 cut(s)	162, 179, 728, 796, 874, 1019
TasI	AATT	4 cut(s)	314, 326, 786, 922
TatI	WGTACW	5 cut(s)	695, 701, 791, 970, 1088
TauI	GCSGC	1 cut(s)	558
TfiI	GAWTC	1 cut(s)	902
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	2 cut(s)	888, 948
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	4 cut(s)	115, 118, 126, 153
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	17, 260, 347, 1049
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	2 cut(s)	888, 948
VpaK11BI	GGWCC	2 cut(s)	811, 1096
XagI	CCTNNNNNAGG	2 cut(s)	516, 823
XhoI	CTCGAG	1 cut(s)	795
XspI	CTAG	3 cut(s)	57, 699, 1043
ZrmI	AGTACT	4 cut(s)	697, 793, 972, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.