Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009474.1

Orthogroup ID

OG0012871

Physical Location & Seq

Genomic Coordinates Reverse (-)

4388 .. 5741

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009474.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgaagatatcaagtgaaggtaccagtcaagcttctaaagcaagtttatcatcttctagccagagcaagaaggaacgtggtgacgatgaggaggtggtggataaggatagccagcagcagcccagcagcaagaatggtgttagctccagtagcagtaccatcgaagagaacgaaaagtcgaagggtgcttcaggtggatctgtacgaccgtatgtgcgttccaagacttcaaggcttcgatggactcctgatctccatctttgctttattcatgcggttgaaagattaggagggcaagagagagcaacaccaaaattagttcttcaattgatgaatgtcaagggtctcagcatagctcatgtcaagagccatcttcaaatgtataggagcaagaagatggaagacccaaatcaagttctctcagagcaaggcttctacattgaaggtggagataatcatatatacaaccttactcaactctccgtgctacaaagtttcaaccaccaatggccttcttcaggattaagatatggtgctgatgcctcttggcatggccgccacgacgaccaccaccaccagatttatagcccttacagtaatacaggcaggactcaactatttgatcatcataatacaagagttacaggacttcatggttcagttgctgagagaatatttggaagcaacaacaccagtactactgttttgagaccacaggaacctgtctatggctgtcaacggaggaccaggcttgaagagttggttgtgatgctgatgaggattttgtatgtgattgtttcgaatgccataaacaccgtgatgatggtgaagatgatcagaagcagcaccatcttctccttccatgtttcgacaggaaggttcaaggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

296

Amino Acids

33.21

Weight (kDa)

9.54

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40260 AT2G40260
fragaria_vesca	FvH4_7g24880
malus_domestica	MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica	Prupe.2G253700_v2.0.a1
pyrus_communis	pycom01g17330
rosa_chinensis	RchiOBHm_Chr1g0370761
rosa_laevigata	RLG00000027012
rosa_multiflora	Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286260
rosa_rugosa	Rorug01G0359400
rosa_samantha	Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana	Rw1G032450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	2 cut(s)	275, 556
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	174, 501
AfaI	GTAC	4 cut(s)	22, 157, 204, 697
AfiI	CCNNNNNNNGG	2 cut(s)	518, 728
AgsI	TTSAA	8 cut(s)	231, 281, 326, 377, 443, 499, 755, 883
AjnI	CCWGG	1 cut(s)	746
AluBI	AGCT	3 cut(s)	32, 144, 356
AluI	AGCT	3 cut(s)	32, 144, 356
Alw26I	GTCTC	2 cut(s)	350, 703
AlwI	GGATC	1 cut(s)	205
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	2 cut(s)	509, 553
ApeKI	GCWGC	4 cut(s)	115, 118, 126, 843
Asp718I	GGTACC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	92, 838
AsuII	TTCGAA	1 cut(s)	800
AvaII	GGWCC	1 cut(s)	744
BanI	GGYRCC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	127, 130, 138, 855
BccI	CCATC	7 cut(s)	167, 234, 264, 378, 391, 817, 857
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	748
BclI	TGATCA	2 cut(s)	622, 834
BcoDI	GTCTC	2 cut(s)	350, 703
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	5 cut(s)	116, 119, 127, 556, 844
BlsI	GCNGC	5 cut(s)	117, 120, 128, 557, 845
BmcAI	AGTACT	1 cut(s)	697
Bme1390I	CCNGG	1 cut(s)	748
Bme18I	GGWCC	1 cut(s)	744
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	2 cut(s)	22, 720
BmrFI	CCNGG	1 cut(s)	748
BmsI	GCATC	2 cut(s)	529, 759
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	800
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	2 cut(s)	350, 703
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 728
Bse1I	ACTGG	3 cut(s)	24, 147, 693
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	748
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	518, 728
BseMII	CTCAG	3 cut(s)	361, 435, 657
BseNI	ACTGG	3 cut(s)	24, 147, 693
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	127, 130, 138, 855
BseYI	CCCAGC	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	511, 555
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	518, 728
BsmAI	GTCTC	2 cut(s)	350, 703
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	2 cut(s)	511, 555
Bso31I	GGTCTC	2 cut(s)	350, 703
Bsp119I	TTCGAA	1 cut(s)	800
Bsp143I	GATC	4 cut(s)	197, 250, 622, 834
BspACI	CCGC	2 cut(s)	275, 556
BspANI	GGCC	2 cut(s)	511, 555
BspCNI	CTCAG	3 cut(s)	360, 434, 658
BspLI	GGNNCC	2 cut(s)	22, 720
BspPI	GGATC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	800
BspT107I	GGYRCC	1 cut(s)	20
BspTNI	GGTCTC	2 cut(s)	350, 703
BsrI	ACTGG	3 cut(s)	24, 147, 693
BssMI	GATC	4 cut(s)	197, 250, 622, 834
Bst2UI	CCWGG	1 cut(s)	748
Bst4CI	ACNGT	4 cut(s)	210, 596, 703, 817
Bst6I	CTCTTC	2 cut(s)	159, 750
BstBI	TTCGAA	1 cut(s)	800
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	3 cut(s)	347, 421, 666
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstKTI	GATC	4 cut(s)	200, 253, 625, 837
BstMAI	GTCTC	2 cut(s)	350, 703
BstMBI	GATC	4 cut(s)	197, 250, 622, 834
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 150
BstNI	CCWGG	1 cut(s)	748
BstSCI	CCNGG	1 cut(s)	746
BstV1I	GCAGC	4 cut(s)	127, 130, 138, 855
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	511, 555
Cac8I	GCNNGC	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	744
Csp6I	GTAC	4 cut(s)	21, 156, 203, 696
CviAII	CATG	5 cut(s)	272, 359, 551, 653, 863
CviQI	GTAC	4 cut(s)	21, 156, 203, 696
DdeI	CTNAG	3 cut(s)	347, 421, 666
DpnI	GATC	4 cut(s)	199, 252, 624, 836
DpnII	GATC	4 cut(s)	197, 250, 622, 834
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	2 cut(s)	159, 750
EarI	CTCTTC	2 cut(s)	159, 750
Eco31I	GGTCTC	2 cut(s)	350, 703
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	744
Eco57I	CTGAAG	2 cut(s)	174, 501
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	746
EcoRV	GATATC	1 cut(s)	9
FaeI	CATG	5 cut(s)	275, 362, 554, 656, 866
FatI	CATG	5 cut(s)	271, 358, 550, 652, 862
FbaI	TGATCA	2 cut(s)	622, 834
Fnu4HI	GCNGC	5 cut(s)	116, 119, 127, 556, 844
Fsp4HI	GCNGC	5 cut(s)	116, 119, 127, 556, 844
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	5 cut(s)	116, 119, 127, 556, 844
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	511, 555
Hin1II	CATG	5 cut(s)	275, 362, 554, 656, 866
HincII	GTYRAC	1 cut(s)	737
HindII	GTYRAC	1 cut(s)	737
HindIII	AAGCTT	1 cut(s)	30
HinfI	GANTC	2 cut(s)	244, 610
HphI	GGTGA	2 cut(s)	92, 838
Hpy166II	GTNNAC	1 cut(s)	737
Hpy188I	TCNGA	2 cut(s)	424, 839
Hpy188III	TCNNGA	3 cut(s)	248, 364, 519
Hpy8I	GTNNAC	1 cut(s)	737
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	7 cut(s)	11, 64, 175, 437, 522, 868, 870
HpyCH4III	ACNGT	4 cut(s)	210, 596, 703, 817
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 150
HpyF3I	CTNAG	3 cut(s)	347, 421, 666
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	5 cut(s)	275, 362, 554, 656, 866
KpnI	GGTACC	1 cut(s)	24
Ksp22I	TGATCA	2 cut(s)	622, 834
Kzo9I	GATC	4 cut(s)	197, 250, 622, 834
LmnI	GCTCC	2 cut(s)	149, 387
Lsp1109I	GCAGC	4 cut(s)	127, 130, 138, 855
LweI	GCATC	2 cut(s)	529, 759
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	80, 640
MalI	GATC	4 cut(s)	199, 252, 624, 836
MboI	GATC	4 cut(s)	197, 250, 622, 834
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	2 cut(s)	314, 326
MlyI	GAGTC	2 cut(s)	238, 604
MnlI	CCTC	6 cut(s)	82, 85, 284, 553, 735, 771
MseI	TTAA	2 cut(s)	524, 889
MslI	CAYNNNNRTG	1 cut(s)	818
MspR9I	CCNGG	1 cut(s)	748
MunI	CAATTG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	1 cut(s)	748
MwoI	GCNNNNNNNGC	2 cut(s)	38, 150
NdeII	GATC	4 cut(s)	197, 250, 622, 834
NlaIII	CATG	5 cut(s)	275, 362, 554, 656, 866
NlaIV	GGNNCC	2 cut(s)	22, 720
NmuCI	GTSAC	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	800
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	808
PkrI	GCNGC	5 cut(s)	117, 120, 128, 557, 845
PleI	GAGTC	2 cut(s)	238, 604
PpsI	GAGTC	2 cut(s)	238, 604
Psp6I	CCWGG	1 cut(s)	746
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	746
PspN4I	GGNNCC	2 cut(s)	22, 720
PspPI	GGNCC	1 cut(s)	744
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	4 cut(s)	22, 157, 204, 697
RsaNI	GTAC	4 cut(s)	21, 156, 203, 696
RseI	CAYNNNNRTG	1 cut(s)	818
SaqAI	TTAA	2 cut(s)	524, 889
SatI	GCNGC	5 cut(s)	116, 119, 127, 556, 844
Sau3AI	GATC	4 cut(s)	197, 250, 622, 834
Sau96I	GGNCC	1 cut(s)	744
ScaI	AGTACT	1 cut(s)	697
SchI	GAGTC	2 cut(s)	238, 604
ScrFI	CCNGG	1 cut(s)	748
SfaNI	GCATC	2 cut(s)	529, 759
SfuI	TTCGAA	1 cut(s)	800
SinI	GGWCC	1 cut(s)	744
SmiMI	CAYNNNNRTG	1 cut(s)	818
Sse9I	AATT	2 cut(s)	314, 326
SsiI	CCGC	2 cut(s)	275, 556
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	746
TaaI	ACNGT	4 cut(s)	210, 596, 703, 817
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	5 cut(s)	162, 179, 238, 800, 869
TasI	AATT	2 cut(s)	314, 326
TatI	WGTACW	1 cut(s)	695
TauI	GCSGC	1 cut(s)	558
Tru1I	TTAA	2 cut(s)	524, 889
Tru9I	TTAA	2 cut(s)	524, 889
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	4 cut(s)	115, 118, 126, 843
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	17, 260, 347, 641
TspGWI	ACGGA	2 cut(s)	472, 754
VpaK11BI	GGWCC	1 cut(s)	744
XagI	CCTNNNNNAGG	1 cut(s)	516
XspI	CTAG	1 cut(s)	57
ZrmI	AGTACT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.