Prupe.2G253700_v2.0.a1
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012871
Physical Location & Seq
Reverse (-)
26691322 .. 26693496
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G253700.1

Sequence Viewer

Length: 1077 bp
ATGAAGAGTAAAAGCTCCACTGAAGAAGTTTCTGAAACAAGCCCATCTATCAGCAAGAAGGAATTTGAAGATGAAGATGATGAGGGAGATGAGGGTGAAGAGGAGGAGGTGGACAAAGATAGCCTGCAGCTGAGGAACAATGGTGTCAGCTCCAGCAACAGCACCATTGAAGAGAATGAGAAGAAGGGAGTTTCTGGATCTGTGCGGCAGTATGTTCGTTCCAAGACATCGAGGCTTCGGTGGACACCTGATCTCCATCTTTGCTTTGTTCATGCAGTTGAGAGATTAGGTGGACAAGAAAGAGCAACACCTAAGTTGGTGCTTCAATTGATGAATGTCAAGGGTCTTAGCATAGCTCATGTCAAGAGCCATCTTCAAATGTATAGGAGCAAGAAGATGGAAGACCCCGATCAAGTTATGTCGGAGCAAGGCTTTTTCATGGAAGGCGGAGACAACCATATTTACAACCTCACTCAACTCTCCATGTTACAAAGTTTCAACCAATGGCCTTCTTCCGGATTAAGATATGGCACTGCCACTGATGCCGCTTGGCGAGGTCGCCAACACCAGATTTATAGCCCTTACAATACACACAGGACTGCCCTACTTGATCATAATACCAGAAACATTGGACTTTATGGTTCAGTTGCTGACAGGATATTTGGAAACAACAACAATCCCACTTCAGCAAACAATCACTTACATACAAATAATCCATCTCCCAGTTATGTTCAAACCACTTGGAGAAGGCATCAAATCCGGGATGAGTCATTCCAATCCACGATCCACGTGCCATGCCAAGATCATAGTTGGAAAGCAATTCGAGACAGGCAAAACTTGCTGAAAAGGAAGGCCCCGGATTCAGATCATACTACTTGTGACTTAGATTTGAATTTATCTTTGAAAGTTCCACAAAAAGATGATCATGAATTTGGAAAGGGTTTGGAGGGCTGTAGTTTATCTCTTTCCTTGACTTCATCTTCATCATCGAAGCTCAGCACGAAGAAACTAGAAGGTGGTGGTCATGGCAGGGGGGAGCATGGGAGGATGCCAAGTACTCTGGACCTCACTTTATGA

Protein Analysis

359

Amino Acids

40.31

Weight (kDa)

6.5

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 515
AciI CCGC 3 cut(s) 205, 447, 546
AclWI GGATC 2 cut(s) 205, 778
AcsI RAATTY 3 cut(s) 62, 892, 929
AcuI CTGAAG 2 cut(s) 42, 669
AcvI CACGTG 1 cut(s) 790
AfaI GTAC 1 cut(s) 1057
AfiI CCNNNNNNNGG 1 cut(s) 515
AgsI TTSAA 8 cut(s) 68, 170, 326, 377, 499, 734, 892, 904
AluBI AGCT 5 cut(s) 15, 130, 150, 356, 994
AluI AGCT 5 cut(s) 15, 130, 150, 356, 994
Alw26I GTCTC 2 cut(s) 444, 819
AlwI GGATC 2 cut(s) 205, 778
AlwNI CAGNNNCTG 1 cut(s) 650
Aor13HI TCCGGA 1 cut(s) 515
AoxI GGCC 2 cut(s) 506, 852
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 3 cut(s) 62, 892, 929
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
AspS9I GGNCC 2 cut(s) 853, 1063
AsuC2I CCSGG 2 cut(s) 761, 857
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 1063
BbrPI CACGTG 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 408
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 139
BccI CCATC 5 cut(s) 52, 264, 378, 391, 724
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 772, 806
BclI TGATCA 2 cut(s) 610, 922
BcnI CCSGG 2 cut(s) 761, 857
BcoDI GTCTC 2 cut(s) 444, 819
BfaI CTAG 1 cut(s) 1010
BfmI CTRYAG 2 cut(s) 125, 952
BisI GCNGC 3 cut(s) 128, 206, 546
BlpI GCTNAGC 1 cut(s) 995
BlsI GCNGC 3 cut(s) 129, 207, 547
BmcAI AGTACT 1 cut(s) 1057
Bme1390I CCNGG 2 cut(s) 761, 857
Bme18I GGWCC 1 cut(s) 1063
BmgT120I GGNCC 2 cut(s) 853, 1063
BmiI GGNNCC 1 cut(s) 855
BmrFI CCNGG 2 cut(s) 761, 857
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 3 cut(s) 532, 760, 1038
BmuI ACTGGG 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 995
BpuMI CCSGG 2 cut(s) 761, 857
BsaAI YACGTR 1 cut(s) 790
BsaBI GATNNNNATC 2 cut(s) 255, 864
BsaJI CCNNGG 1 cut(s) 855
BsaWI WCCGGW 1 cut(s) 515
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 1 cut(s) 723
Bse8I GATNNNNATC 2 cut(s) 255, 864
BseAI TCCGGA 1 cut(s) 515
BseDI CCNNGG 1 cut(s) 855
BseGI GGATG 2 cut(s) 769, 1053
BseJI GATNNNNATC 2 cut(s) 255, 864
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMII CTCAG 2 cut(s) 122, 1009
BseNI ACTGG 1 cut(s) 723
BseRI GAGGAG 2 cut(s) 116, 119
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 2 cut(s) 508, 854
BsiSI CCGG 3 cut(s) 516, 760, 857
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 2 cut(s) 444, 819
BsnI GGCC 2 cut(s) 508, 854
Bsp13I TCCGGA 1 cut(s) 515
Bsp143I GATC 8 cut(s) 197, 250, 409, 610, 783, 802, 865, 922
Bsp1720I GCTNAGC 1 cut(s) 995
BspACI CCGC 3 cut(s) 205, 447, 546
BspANI GGCC 2 cut(s) 508, 854
BspCNI CTCAG 2 cut(s) 123, 1008
BspEI TCCGGA 1 cut(s) 515
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 1 cut(s) 855
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 2 cut(s) 205, 778
BsrI ACTGG 1 cut(s) 723
BssECI CCNNGG 1 cut(s) 855
BssMI GATC 8 cut(s) 197, 250, 409, 610, 783, 802, 865, 922
Bst6I CTCTTC 2 cut(s) 93, 165
BstAPI GCANNNNNTGC 1 cut(s) 838
BstBAI YACGTR 1 cut(s) 790
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 5 cut(s) 131, 312, 347, 883, 995
BstF5I GGATG 2 cut(s) 769, 1053
BstKTI GATC 8 cut(s) 200, 253, 412, 613, 786, 805, 868, 925
BstMAI GTCTC 2 cut(s) 444, 819
BstMBI GATC 8 cut(s) 197, 250, 409, 610, 783, 802, 865, 922
BstMWI GCNNNNNNNGC 2 cut(s) 542, 838
BstSCI CCNGG 2 cut(s) 759, 855
BstSFI CTRYAG 2 cut(s) 125, 952
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 508, 854
BtsCI GGATG 2 cut(s) 769, 1053
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 3 cut(s) 18, 531, 537
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 650
CciI TCATGA 1 cut(s) 925
Cfr13I GGNCC 2 cut(s) 853, 1063
Csp6I GTAC 1 cut(s) 1056
CviAII CATG 8 cut(s) 272, 359, 439, 484, 795, 926, 1025, 1040
CviQI GTAC 1 cut(s) 1056
DdeI CTNAG 5 cut(s) 131, 312, 347, 883, 995
DpnI GATC 8 cut(s) 199, 252, 411, 612, 785, 804, 867, 924
DpnII GATC 8 cut(s) 197, 250, 409, 610, 783, 802, 865, 922
Eam1104I CTCTTC 2 cut(s) 93, 165
EarI CTCTTC 2 cut(s) 93, 165
EciI GGCGGA 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 1063
Eco57I CTGAAG 2 cut(s) 42, 669
Eco72I CACGTG 1 cut(s) 790
EcoO109I RGGNCCY 1 cut(s) 853
FaeI CATG 8 cut(s) 275, 362, 442, 487, 798, 929, 1028, 1043
FatI CATG 8 cut(s) 271, 358, 438, 483, 794, 925, 1024, 1039
FbaI TGATCA 2 cut(s) 610, 922
Fnu4HI GCNGC 3 cut(s) 128, 206, 546
FokI GGATG 2 cut(s) 776, 1060
Fsp4HI GCNGC 3 cut(s) 128, 206, 546
FspBI CTAG 1 cut(s) 1010
GluI GCNGC 3 cut(s) 128, 206, 546
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 2 cut(s) 508, 854
HapII CCGG 3 cut(s) 516, 760, 857
Hin1II CATG 8 cut(s) 275, 362, 442, 487, 798, 929, 1028, 1043
HinfI GANTC 2 cut(s) 767, 860
HpaII CCGG 3 cut(s) 516, 760, 857
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 3 cut(s) 112, 243, 293
Hpy188I TCNGA 3 cut(s) 34, 424, 865
Hpy188III TCNNGA 6 cut(s) 195, 364, 516, 824, 926, 1061
Hpy8I GTNNAC 3 cut(s) 112, 243, 293
HpyAV CCTTC 7 cut(s) 52, 178, 437, 519, 741, 844, 1007
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 2 cut(s) 127, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 838
HpyF3I CTNAG 5 cut(s) 131, 312, 347, 883, 995
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 8 cut(s) 275, 362, 442, 487, 798, 929, 1028, 1043
Kpn2I TCCGGA 1 cut(s) 515
Ksp22I TGATCA 2 cut(s) 610, 922
Kzo9I GATC 8 cut(s) 197, 250, 409, 610, 783, 802, 865, 922
LmnI GCTCC 5 cut(s) 20, 155, 387, 424, 1036
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 3 cut(s) 532, 760, 1038
MaeI CTAG 1 cut(s) 1010
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 2 cut(s) 486, 878
MalI GATC 8 cut(s) 199, 252, 411, 612, 785, 804, 867, 924
MboI GATC 8 cut(s) 197, 250, 409, 610, 783, 802, 865, 922
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 1 cut(s) 197
MluCI AATT 5 cut(s) 62, 326, 819, 892, 929
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 2 cut(s) 402, 791
MroI TCCGGA 1 cut(s) 515
MseI TTAA 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 3 cut(s) 516, 760, 857
MspR9I CCNGG 2 cut(s) 761, 857
MunI CAATTG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 542, 838
NciI CCSGG 2 cut(s) 761, 857
NdeII GATC 8 cut(s) 197, 250, 409, 610, 783, 802, 865, 922
NlaIII CATG 8 cut(s) 275, 362, 442, 487, 798, 929, 1028, 1043
NlaIV GGNNCC 1 cut(s) 855
NmuCI GTSAC 1 cut(s) 878
PagI TCATGA 1 cut(s) 925
PfeI GAWTC 1 cut(s) 860
PfoI TCCNGGA 1 cut(s) 759
PkrI GCNGC 3 cut(s) 129, 207, 547
PleI GAGTC 1 cut(s) 775
PmaCI CACGTG 1 cut(s) 790
PmlI CACGTG 1 cut(s) 790
PpsI GAGTC 1 cut(s) 775
Ppu21I YACGTR 1 cut(s) 790
PspCI CACGTG 1 cut(s) 790
PspN4I GGNNCC 1 cut(s) 855
PspPI GGNCC 2 cut(s) 853, 1063
PstI CTGCAG 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 1 cut(s) 1057
RsaNI GTAC 1 cut(s) 1056
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 3 cut(s) 128, 206, 546
Sau3AI GATC 8 cut(s) 197, 250, 409, 610, 783, 802, 865, 922
Sau96I GGNCC 2 cut(s) 853, 1063
ScaI AGTACT 1 cut(s) 1057
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 2 cut(s) 761, 857
SfaNI GCATC 3 cut(s) 532, 760, 1038
SfcI CTRYAG 2 cut(s) 125, 952
SinI GGWCC 1 cut(s) 1063
Sse9I AATT 5 cut(s) 62, 326, 819, 892, 929
SsiI CCGC 3 cut(s) 205, 447, 546
SspMI CTAG 1 cut(s) 1010
StyD4I CCNGG 2 cut(s) 759, 855
TaiI ACGT 1 cut(s) 792
TaqI TCGA 3 cut(s) 230, 823, 989
TasI AATT 5 cut(s) 62, 326, 819, 892, 929
TatI WGTACW 1 cut(s) 1055
TauI GCSGC 2 cut(s) 208, 548
TfiI GAWTC 1 cut(s) 860
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 3 cut(s) 25, 538, 544
TseFI GTSAC 1 cut(s) 878
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 878
TspDTI ATGAA 8 cut(s) 17, 87, 260, 347, 427, 942, 966, 972
TspRI CASTG 3 cut(s) 25, 538, 544
VpaK11BI GGWCC 1 cut(s) 1063
XapI RAATTY 3 cut(s) 62, 892, 929
XspI CTAG 1 cut(s) 1010
ZrmI AGTACT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.