RLG00000027012
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012871
Physical Location & Seq
Forward (+)
7666332 .. 7667898
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027012

Sequence Viewer

Length: 1104 bp
ATGAAGATATCAAGTGAAGGTACCAGTCAAGCTTCTAAAGCAAGTTTATCATCTTCTAGCCAGAGCAAGAAGGAACGTGGTGACGATGAGGAGGTGGTGGATAAGGATAGCCAGCAGCAGCTCAGCAGCAAGAATGGTGTTAGCTCCAGTAGCAGCACCATTGAAGAGAACGAAAAGTCGAAGGGTGCTTCAGGTGGATCTGTACGACAGTATGTGCGTTCCAAAACTTCAAGGCTTCGATGGACTCCTGATCTCCATCTTTGCTTTATTCATGCGGTTGAAAGATTAGGAGGGCAAGAGAGAGCAACACCAAAACTAGTTCTTCAATTGATGAATGTCAAGGGTCTCAGCATAGCTCATGTCAAGAGCCATCTTCAAATGTATAGGAGCAAGAAGATGGAAGACCCAAATCAAGTTCTCTCAGAGCAAGGCTTCTACATTGAAGGTGGAGATAATCATATATACAACCTTACTCAACTCTCCGTGCTACAAAGTTTCAACCACCAATGGCCTTCTTCAGTATTAAGATATGGTGCTGATACCTCTTGGCGTGGCTTCCACGACGACGACCACCACCAGATTTATAGCCCTTACAGTAATACAGGCAGGACTCAACTATTTGATCATCATAATACAAGAGTTACAGGACTTTATGGTTCAGTTGCTGAGAGAATATTTGGAAGCAACAACACCAGTACTAGTACAACTACGACTACTGCTACTACACCGAACAATATTCAATCACATACAACTCATATTCCATCCACTTGGAGATCAAGGCATCAAATTAGTACTCGAGTCCACAACGGGTTCCTACCCTTCAACAGGCAGTCACGGCAAGATCACAGTTGGTTGGACAACAGTATCGCCACTCGAAACACACTGAAAAGAAAGGCTCCGGATTCTTCAGATAATACTTCTAATTTGGATTTGAACTTATCACTGAAAGTTCCTGCAACAGAAGAAAAGGTACTGGGATTTGGTCTGTCTCTTTCTCCAGCTTCAGCGTCCTCGAAGCTCGGCTTGATGAAGAAGCTAGAAGGTAATGGTGGTCATGATAGGGAGCATGGGAGAAAGGCAAGTACTCTGGACCTCACTCTATGA

Protein Analysis

368

Amino Acids

40.73

Weight (kDa)

9.42

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 78 - 129 2.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 898
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 205
AcuI CTGAAG 4 cut(s) 174, 501, 891, 987
AfaI GTAC 7 cut(s) 22, 204, 697, 703, 793, 972, 1084
AfiI CCNNNNNNNGG 1 cut(s) 825
AhlI ACTAGT 2 cut(s) 316, 698
AluBI AGCT 7 cut(s) 32, 121, 144, 356, 1001, 1018, 1036
AluI AGCT 7 cut(s) 32, 121, 144, 356, 1001, 1018, 1036
Alw26I GTCTC 2 cut(s) 350, 993
AlwI GGATC 1 cut(s) 205
AlwNI CAGNNNCTG 1 cut(s) 665
Ama87I CYCGRG 1 cut(s) 795
Aor13HI TCCGGA 1 cut(s) 898
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 4 cut(s) 115, 118, 126, 153
Asp718I GGTACC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 1090
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 795
AvaII GGWCC 1 cut(s) 1090
BaeI ACNNNNGTAYC 2 cut(s) 847, 880
BanI GGYRCC 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 954, 986
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 4 cut(s) 127, 130, 138, 165
BccI CCATC 5 cut(s) 234, 264, 378, 391, 769
BceAI ACGGC 1 cut(s) 851
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 2 cut(s) 350, 993
BcuI ACTAGT 2 cut(s) 316, 698
BfaI CTAG 4 cut(s) 57, 317, 699, 1037
BisI GCNGC 4 cut(s) 116, 119, 127, 154
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 4 cut(s) 117, 120, 128, 155
BmcAI AGTACT 3 cut(s) 697, 793, 1084
Bme18I GGWCC 1 cut(s) 1090
BmeT110I CYCGRG 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 1090
BmiI GGNNCC 3 cut(s) 22, 812, 897
BmrI ACTGGG 1 cut(s) 983
BmsI GCATC 1 cut(s) 790
BmuI ACTGGG 1 cut(s) 983
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 2 cut(s) 130, 981
Bpu1102I GCTNAGC 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 898
Bsc4I CCNNNNNNNGG 1 cut(s) 825
Bse1I ACTGG 4 cut(s) 24, 147, 693, 978
Bse8I GATNNNNATC 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 898
BseGI GGATG 1 cut(s) 761
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 825
BseMII CTCAG 4 cut(s) 136, 361, 435, 657
BseNI ACTGG 4 cut(s) 24, 147, 693, 978
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 4 cut(s) 127, 130, 138, 165
BshFI GGCC 1 cut(s) 511
BshNI GGYRCC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 795
BsiSI CCGG 1 cut(s) 899
BslI CCNNNNNNNGG 1 cut(s) 825
BsmAI GTCTC 2 cut(s) 350, 993
BsnI GGCC 1 cut(s) 511
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 795
Bsp13I TCCGGA 1 cut(s) 898
Bsp143I GATC 5 cut(s) 197, 250, 622, 773, 841
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 1 cut(s) 275
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 4 cut(s) 135, 360, 434, 658
BspEI TCCGGA 1 cut(s) 898
BspHI TCATGA 1 cut(s) 1054
BspLI GGNNCC 3 cut(s) 22, 812, 897
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 350
BsrI ACTGG 4 cut(s) 24, 147, 693, 978
BssMI GATC 5 cut(s) 197, 250, 622, 773, 841
Bst4CI ACNGT 4 cut(s) 210, 596, 848, 863
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 122, 347, 421, 666
BstENI CCTNNNNNAGG 1 cut(s) 823
BstF5I GGATG 1 cut(s) 761
BstKTI GATC 5 cut(s) 200, 253, 625, 776, 844
BstMAI GTCTC 2 cut(s) 350, 993
BstMBI GATC 5 cut(s) 197, 250, 622, 773, 841
BstMWI GCNNNNNNNGC 3 cut(s) 38, 150, 835
BstV1I GCAGC 4 cut(s) 127, 130, 138, 165
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 768
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 1 cut(s) 511
BtsCI GGATG 1 cut(s) 761
BtsIMutI CAGTG 2 cut(s) 881, 941
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 665
CciI TCATGA 1 cut(s) 1054
Cfr13I GGNCC 1 cut(s) 1090
CseI GACGC 1 cut(s) 996
Csp6I GTAC 7 cut(s) 21, 203, 696, 702, 792, 971, 1083
CviAII CATG 4 cut(s) 272, 359, 1055, 1067
CviQI GTAC 7 cut(s) 21, 203, 696, 702, 792, 971, 1083
DdeI CTNAG 4 cut(s) 122, 347, 421, 666
DpnI GATC 5 cut(s) 199, 252, 624, 775, 843
DpnII GATC 5 cut(s) 197, 250, 622, 773, 841
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 350
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 1090
Eco57I CTGAAG 4 cut(s) 174, 501, 891, 987
Eco88I CYCGRG 1 cut(s) 795
EcoNI CCTNNNNNAGG 1 cut(s) 823
EcoRV GATATC 1 cut(s) 9
FaeI CATG 4 cut(s) 275, 362, 1058, 1070
FalI AAGNNNNNCTT 2 cut(s) 1007, 1039
FatI CATG 4 cut(s) 271, 358, 1054, 1066
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 4 cut(s) 116, 119, 127, 154
FokI GGATG 1 cut(s) 748
Fsp4HI GCNGC 4 cut(s) 116, 119, 127, 154
FspBI CTAG 4 cut(s) 57, 317, 699, 1037
GluI GCNGC 4 cut(s) 116, 119, 127, 154
GsuI CTGGAG 2 cut(s) 130, 981
HaeIII GGCC 1 cut(s) 511
HapII CCGG 1 cut(s) 899
HgaI GACGC 1 cut(s) 996
Hin1II CATG 4 cut(s) 275, 362, 1058, 1070
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 4 cut(s) 244, 610, 798, 902
HpaII CCGG 1 cut(s) 899
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 802
Hpy188I TCNGA 2 cut(s) 424, 910
Hpy188III TCNNGA 5 cut(s) 248, 364, 899, 1055, 1088
Hpy8I GTNNAC 1 cut(s) 802
Hpy99I CGWCG 2 cut(s) 566, 569
HpyAV CCTTC 7 cut(s) 11, 64, 175, 437, 522, 829, 1034
HpyCH4III ACNGT 4 cut(s) 210, 596, 848, 863
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 150, 835
HpyF3I CTNAG 4 cut(s) 122, 347, 421, 666
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 4 cut(s) 275, 362, 1058, 1070
Kpn2I TCCGGA 1 cut(s) 898
KpnI GGTACC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 5 cut(s) 197, 250, 622, 773, 841
LmnI GCTCC 4 cut(s) 149, 387, 901, 1063
Lsp1109I GCAGC 4 cut(s) 127, 130, 138, 165
LweI GCATC 1 cut(s) 790
MaeI CTAG 4 cut(s) 57, 317, 699, 1037
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 3 cut(s) 80, 640, 831
MalI GATC 5 cut(s) 199, 252, 624, 775, 843
MboI GATC 5 cut(s) 197, 250, 622, 773, 841
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 1 cut(s) 197
MluCI AATT 3 cut(s) 326, 786, 922
MlyI GAGTC 3 cut(s) 238, 604, 807
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 6 cut(s) 82, 85, 284, 553, 1021, 1103
MroI TCCGGA 1 cut(s) 898
MseI TTAA 1 cut(s) 524
MspI CCGG 1 cut(s) 899
MunI CAATTG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 38, 150, 835
NdeII GATC 5 cut(s) 197, 250, 622, 773, 841
NlaIII CATG 4 cut(s) 275, 362, 1058, 1070
NlaIV GGNNCC 3 cut(s) 22, 812, 897
NmeAIII GCCGAG 1 cut(s) 999
NmuCI GTSAC 2 cut(s) 80, 831
PaeR7I CTCGAG 1 cut(s) 795
PagI TCATGA 1 cut(s) 1054
PfeI GAWTC 1 cut(s) 902
PkrI GCNGC 4 cut(s) 117, 120, 128, 155
PleI GAGTC 3 cut(s) 238, 604, 806
PpsI GAGTC 3 cut(s) 238, 604, 806
PspN4I GGNNCC 3 cut(s) 22, 812, 897
PspPI GGNCC 1 cut(s) 1090
PspXI VCTCGAGB 1 cut(s) 795
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 7 cut(s) 22, 204, 697, 703, 793, 972, 1084
RsaNI GTAC 7 cut(s) 21, 203, 696, 702, 792, 971, 1083
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 4 cut(s) 116, 119, 127, 154
Sau3AI GATC 5 cut(s) 197, 250, 622, 773, 841
Sau96I GGNCC 1 cut(s) 1090
ScaI AGTACT 3 cut(s) 697, 793, 1084
SchI GAGTC 3 cut(s) 238, 604, 807
SfaNI GCATC 1 cut(s) 790
Sfr274I CTCGAG 1 cut(s) 795
SinI GGWCC 1 cut(s) 1090
SlaI CTCGAG 1 cut(s) 795
SmlI CTYRAG 1 cut(s) 795
SmoI CTYRAG 1 cut(s) 795
SpeI ACTAGT 2 cut(s) 316, 698
Sse9I AATT 3 cut(s) 326, 786, 922
SsiI CCGC 1 cut(s) 275
SspI AATATT 2 cut(s) 675, 736
SspMI CTAG 4 cut(s) 57, 317, 699, 1037
TaaI ACNGT 4 cut(s) 210, 596, 848, 863
TaiI ACGT 1 cut(s) 79
TaqI TCGA 5 cut(s) 179, 238, 796, 874, 1013
TasI AATT 3 cut(s) 326, 786, 922
TatI WGTACW 4 cut(s) 695, 701, 791, 1082
TfiI GAWTC 1 cut(s) 902
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 2 cut(s) 888, 948
TseFI GTSAC 2 cut(s) 80, 831
TseI GCWGC 4 cut(s) 115, 118, 126, 153
Tsp45I GTSAC 2 cut(s) 80, 831
TspDTI ATGAA 4 cut(s) 17, 260, 347, 1043
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 2 cut(s) 888, 948
VpaK11BI GGWCC 1 cut(s) 1090
XagI CCTNNNNNAGG 1 cut(s) 823
XhoI CTCGAG 1 cut(s) 795
XspI CTAG 4 cut(s) 57, 317, 699, 1037
ZrmI AGTACT 3 cut(s) 697, 793, 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.