Rw1G032450
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012871
Physical Location & Seq
Reverse (-)
60710141 .. 60712163
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G032450.1

Sequence Viewer

Length: 1110 bp
ATGAAGATATCAAGTGAAGGTACCAGTCAAGCTTCTAAAGCAAGTTTATCATCTTCTAGCCAGAGCAAGAAGGAACGTGGTGACGATGAGGAGGTGGTGGATAAGGATAGCCAGCAGCAGCCCAGCAGCAAGAATGGTGTTAGCTCCAGTAGCAGTACCATCGAAGAGAACGAAAAGTCGAAGGGTGCTTCAGGTGGATCTGTACGACCGTATGTGCGTTCCAAGACTTCAAGGCTTCGATGGACTCCTGATCTCCATCTTTGCTTTATTCATGCGGTTGAAAGATTAGGAGGGCAAGAGAGAGCAACACCAAAATTAGTTCTTCAATTGATGAATGTCAAGGGTCTCAGCATAGCTCATGTCAAGAGCCATCTTCAAATGTATAGGAGCAAGAAGATGGAAGACCCAAATCAAGTTCTCTCAGAGCAAGGCTTCTACATTGAAGGTGGAGATAATCATATATACAACCTTACTCAACTCTCCGTGCTACAAAGTTTCAACCACCAATGGCCTTCTTCAGGATTAAGATATGGTGCTGATGCCTCTTGGCATGGCCGCCACGACGACCACCACCACCAGATTTATAGCCCTTACAGTAATACAGGCAGGACTCAACTATTTGATCATCATAATACAAGAGTTACAGGACTTCATGGTTCAGTTGCTGAGAGAATATTTGGAAGCAACAACACCAGTACTACTACAACTACTACTACTGCTACTACATCGAACAATATTCAATCACATACAACTCATATTCCATCCACTTGGAGATCAAGGCATCAAATTAGTACTCGAGTCCACAACGAGGTCCGACCCTTCAACAGGCAGTCATGGCAAGATCACAGTTGGTTGGACAACAGTATCGCCACTCGAAACACACTGAAAAGAAAGGCTCCGGATTCTTCAGATAATACTTCTAATTTGGATTTGAACTTATCACTGAAAGTTCCAGCAACAGAAGAAAAGGTGCTGGGATTTGGTCTGTCTCTTTCTCTTTCTCCAGCTTCAGCGTCCTCGAAGCTCGGCTTGATGAAGAAGCTAGAAGGTAATGGTGGCCATGATAGGGAGCATGGGAGAAAGGCAAGTACTCTGGACCTCACTCTATGA

Protein Analysis

369

Amino Acids

40.9

Weight (kDa)

9.44

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 78 - 129 2.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 898
AciI CCGC 2 cut(s) 275, 556
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 2 cut(s) 553, 1057
AcuI CTGAAG 4 cut(s) 174, 501, 891, 993
AfaI GTAC 6 cut(s) 22, 157, 204, 697, 793, 1090
AfiI CCNNNNNNNGG 4 cut(s) 518, 808, 825, 1066
AgsI TTSAA 9 cut(s) 231, 281, 326, 377, 443, 499, 740, 823, 934
AluBI AGCT 6 cut(s) 32, 144, 356, 1007, 1024, 1042
AluI AGCT 6 cut(s) 32, 144, 356, 1007, 1024, 1042
Alw26I GTCTC 2 cut(s) 350, 993
AlwI GGATC 1 cut(s) 205
AlwNI CAGNNNCTG 1 cut(s) 665
Ama87I CYCGRG 1 cut(s) 795
Aor13HI TCCGGA 1 cut(s) 898
AoxI GGCC 3 cut(s) 509, 553, 1057
ApeKI GCWGC 3 cut(s) 115, 118, 126
Asp718I GGTACC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 811, 1096
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 795
AvaII GGWCC 2 cut(s) 811, 1096
BaeI ACNNNNGTAYC 2 cut(s) 847, 880
BalI TGGCCA 1 cut(s) 1059
BanI GGYRCC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 127, 130, 138
BccI CCATC 6 cut(s) 167, 234, 264, 378, 391, 769
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 2 cut(s) 350, 993
BfaI CTAG 2 cut(s) 57, 1043
BisI GCNGC 4 cut(s) 116, 119, 127, 556
BlsI GCNGC 4 cut(s) 117, 120, 128, 557
BmcAI AGTACT 3 cut(s) 697, 793, 1090
Bme18I GGWCC 2 cut(s) 811, 1096
BmeT110I CYCGRG 1 cut(s) 795
BmgT120I GGNCC 2 cut(s) 811, 1096
BmiI GGNNCC 2 cut(s) 22, 897
BmsI GCATC 2 cut(s) 529, 790
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 2 cut(s) 130, 987
BsaBI GATNNNNATC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 898
Bsc4I CCNNNNNNNGG 4 cut(s) 518, 808, 825, 1066
Bse1I ACTGG 3 cut(s) 24, 147, 693
Bse8I GATNNNNATC 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 898
BseGI GGATG 1 cut(s) 761
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 4 cut(s) 518, 808, 825, 1066
BseMII CTCAG 3 cut(s) 361, 435, 657
BseNI ACTGG 3 cut(s) 24, 147, 693
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 127, 130, 138
BseYI CCCAGC 2 cut(s) 122, 973
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 3 cut(s) 511, 555, 1059
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 795
BsiSI CCGG 1 cut(s) 899
BslI CCNNNNNNNGG 4 cut(s) 518, 808, 825, 1066
BsmAI GTCTC 2 cut(s) 350, 993
BsnI GGCC 3 cut(s) 511, 555, 1059
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 795
Bsp13I TCCGGA 1 cut(s) 898
Bsp143I GATC 5 cut(s) 197, 250, 622, 773, 841
BspACI CCGC 2 cut(s) 275, 556
BspANI GGCC 3 cut(s) 511, 555, 1059
BspCNI CTCAG 3 cut(s) 360, 434, 658
BspEI TCCGGA 1 cut(s) 898
BspLI GGNNCC 2 cut(s) 22, 897
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 350
BsrI ACTGG 3 cut(s) 24, 147, 693
BssMI GATC 5 cut(s) 197, 250, 622, 773, 841
Bst4CI ACNGT 4 cut(s) 210, 596, 848, 863
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 3 cut(s) 347, 421, 666
BstENI CCTNNNNNAGG 2 cut(s) 516, 823
BstF5I GGATG 1 cut(s) 761
BstKTI GATC 5 cut(s) 200, 253, 625, 776, 844
BstMAI GTCTC 2 cut(s) 350, 993
BstMBI GATC 5 cut(s) 197, 250, 622, 773, 841
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 3 cut(s) 38, 150, 835
BstV1I GCAGC 3 cut(s) 127, 130, 138
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 768
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 3 cut(s) 511, 555, 1059
BtsCI GGATG 1 cut(s) 761
BtsIMutI CAGTG 2 cut(s) 881, 941
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 665
Cfr13I GGNCC 2 cut(s) 811, 1096
CseI GACGC 1 cut(s) 1002
Csp6I GTAC 6 cut(s) 21, 156, 203, 696, 792, 1089
CviAII CATG 7 cut(s) 272, 359, 551, 653, 834, 1061, 1073
CviQI GTAC 6 cut(s) 21, 156, 203, 696, 792, 1089
DdeI CTNAG 3 cut(s) 347, 421, 666
DpnI GATC 5 cut(s) 199, 252, 624, 775, 843
DpnII GATC 5 cut(s) 197, 250, 622, 773, 841
EaeI YGGCCR 2 cut(s) 553, 1057
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 350
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 811, 1096
Eco57I CTGAAG 4 cut(s) 174, 501, 891, 993
Eco88I CYCGRG 1 cut(s) 795
EcoNI CCTNNNNNAGG 2 cut(s) 516, 823
EcoRV GATATC 1 cut(s) 9
FaeI CATG 7 cut(s) 275, 362, 554, 656, 837, 1064, 1076
FalI AAGNNNNNCTT 2 cut(s) 1013, 1045
FatI CATG 7 cut(s) 271, 358, 550, 652, 833, 1060, 1072
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 4 cut(s) 116, 119, 127, 556
FokI GGATG 1 cut(s) 748
Fsp4HI GCNGC 4 cut(s) 116, 119, 127, 556
FspBI CTAG 2 cut(s) 57, 1043
GluI GCNGC 4 cut(s) 116, 119, 127, 556
GsaI CCCAGC 2 cut(s) 126, 977
GsuI CTGGAG 2 cut(s) 130, 987
HaeIII GGCC 3 cut(s) 511, 555, 1059
HapII CCGG 1 cut(s) 899
HgaI GACGC 1 cut(s) 1002
Hin1II CATG 7 cut(s) 275, 362, 554, 656, 837, 1064, 1076
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 4 cut(s) 244, 610, 798, 902
HpaII CCGG 1 cut(s) 899
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 802
Hpy188I TCNGA 3 cut(s) 424, 815, 910
Hpy188III TCNNGA 5 cut(s) 248, 364, 519, 899, 1094
Hpy8I GTNNAC 1 cut(s) 802
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 7 cut(s) 11, 64, 175, 437, 522, 829, 1040
HpyCH4III ACNGT 4 cut(s) 210, 596, 848, 863
HpyCH4IV ACGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 150, 835
HpyF3I CTNAG 3 cut(s) 347, 421, 666
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 7 cut(s) 275, 362, 554, 656, 837, 1064, 1076
Kpn2I TCCGGA 1 cut(s) 898
KpnI GGTACC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 5 cut(s) 197, 250, 622, 773, 841
LmnI GCTCC 4 cut(s) 149, 387, 901, 1069
Lsp1109I GCAGC 3 cut(s) 127, 130, 138
LweI GCATC 2 cut(s) 529, 790
MaeI CTAG 2 cut(s) 57, 1043
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 80, 640
MalI GATC 5 cut(s) 199, 252, 624, 775, 843
MboI GATC 5 cut(s) 197, 250, 622, 773, 841
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 1 cut(s) 197
MlsI TGGCCA 1 cut(s) 1059
MluCI AATT 4 cut(s) 314, 326, 786, 922
MluNI TGGCCA 1 cut(s) 1059
MlyI GAGTC 3 cut(s) 238, 604, 807
MmeI TCCRAC 2 cut(s) 834, 838
MnlI CCTC 7 cut(s) 82, 85, 284, 553, 802, 1027, 1109
Mox20I TGGCCA 1 cut(s) 1059
MroI TCCGGA 1 cut(s) 898
MscI TGGCCA 1 cut(s) 1059
MseI TTAA 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 1059
MspI CCGG 1 cut(s) 899
MunI CAATTG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 38, 150, 835
NdeII GATC 5 cut(s) 197, 250, 622, 773, 841
NlaIII CATG 7 cut(s) 275, 362, 554, 656, 837, 1064, 1076
NlaIV GGNNCC 2 cut(s) 22, 897
NmeAIII GCCGAG 1 cut(s) 1005
NmuCI GTSAC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 902
PkrI GCNGC 4 cut(s) 117, 120, 128, 557
PleI GAGTC 3 cut(s) 238, 604, 806
PpsI GAGTC 3 cut(s) 238, 604, 806
PspFI CCCAGC 2 cut(s) 122, 973
PspN4I GGNNCC 2 cut(s) 22, 897
PspPI GGNCC 2 cut(s) 811, 1096
PspXI VCTCGAGB 1 cut(s) 795
PstNI CAGNNNCTG 1 cut(s) 665
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 6 cut(s) 22, 157, 204, 697, 793, 1090
RsaNI GTAC 6 cut(s) 21, 156, 203, 696, 792, 1089
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 4 cut(s) 116, 119, 127, 556
Sau3AI GATC 5 cut(s) 197, 250, 622, 773, 841
Sau96I GGNCC 2 cut(s) 811, 1096
ScaI AGTACT 3 cut(s) 697, 793, 1090
SchI GAGTC 3 cut(s) 238, 604, 807
SfaNI GCATC 2 cut(s) 529, 790
Sfr274I CTCGAG 1 cut(s) 795
SinI GGWCC 2 cut(s) 811, 1096
SlaI CTCGAG 1 cut(s) 795
SmlI CTYRAG 1 cut(s) 795
SmoI CTYRAG 1 cut(s) 795
Sse9I AATT 4 cut(s) 314, 326, 786, 922
SsiI CCGC 2 cut(s) 275, 556
SspI AATATT 2 cut(s) 675, 736
SspMI CTAG 2 cut(s) 57, 1043
TaaI ACNGT 4 cut(s) 210, 596, 848, 863
TaiI ACGT 1 cut(s) 79
TaqI TCGA 7 cut(s) 162, 179, 238, 728, 796, 874, 1019
TasI AATT 4 cut(s) 314, 326, 786, 922
TatI WGTACW 3 cut(s) 695, 791, 1088
TauI GCSGC 1 cut(s) 558
TfiI GAWTC 1 cut(s) 902
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 2 cut(s) 888, 948
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 3 cut(s) 115, 118, 126
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 17, 260, 347, 641, 1049
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 2 cut(s) 888, 948
VpaK11BI GGWCC 2 cut(s) 811, 1096
XagI CCTNNNNNAGG 2 cut(s) 516, 823
XhoI CTCGAG 1 cut(s) 795
XspI CTAG 2 cut(s) 57, 1043
ZrmI AGTACT 3 cut(s) 697, 793, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.