pycom01g17330
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012871
Physical Location & Seq
Reverse (-)
16659852 .. 16661517
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g17330.1

Sequence Viewer

Length: 1140 bp
ATGAAGAGTGAAAGCACCAGTATGGAAGAAGTTTCTAAATCAAGCCCTTCTACCAGCAAGAGGGAATACGATCATGAAGACGATGAGGGTGAAGAGGATGAGGTGGATGAAGATGGCCTTCAGCTGAGCAATAACGGTGTCAGCTCCAGCAATAGCACCATTGACGAAAATCATGAAAAGAAGGGAGCTTCTGGATCTGTAAGGCAGTATGTTCGTTCCAAGACATCGCGGCTTCGATGGACACCTGATCTCCATCTTCGCTTTGTTCATGCAGTTGAAAGATTAGGTGGACAAGAAAGAGCAACTCCTAAGTTGGTTCTTCAATTGATGAATGTTAAGGGTCTTAGTATAGCTCATGTCAAGAGCCATCTTCAAATGCATAGGAGCAAGAAGATGGAAGACCCCAATCAAGTTTTGACAGATCAAGCAGGATTTTTTATGGAAGGTGGAGATAACCAACTTTACAACCTTACTCAACTCTCCATGCTACAAAGCTTCAAAAAATGGCCTTCGTCCGGATTAAGATATGGTGCTACAGATCATTCCTCGTGGCAAGGCCGCCACTACCACCACCAGATATACGGCCCATACCGTTCAAGTAGGACTACTGGACTACTTGCTCATAATACCAGAAATATTGGACTTTATGGTTCAGTTGCTGAAAGAATACTTGGAAGCAACAATAACAATATTATGACTACTTCAGCAAATCAGTTACATGCAAATCTTCAATCTCCCAACCCTGGACAAACCACTTGGAGGAGGCATCAAATTACTCGGGATGAGTCATATCAAACCGTGATCCACAGGCCATGCCAAGATTATCATAATTGGAGTGCAGCGATTCGAGATCATCAAGGGCAAAACATGCAGAAAAGGAAGGCTTTGGACACAGACAACAGTGACTTGGATTTAAATCTGTCACTAAAAGTTCCACCAAAACATGGTCATGGATTCGGAAAAGGTTTACAGTGTGGAGGTGATAATCATCAAAAACTACTCATGGGTTGTAGTTTATCTCTGTCTTTGTCCTCGTCGTCGTCTTCGAAACTTGGCGTGAAGAAATTCGAAGGTACTACTGGTTACGGTGACAGCAAGCACGGGAAGAACATGGCAAGTACTCTGGACCTCACTCTATGA

Protein Analysis

380

Amino Acids

42.34

Weight (kDa)

8.77

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 77 - 128 4.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 944
AccII CGCG 1 cut(s) 229
AccIII TCCGGA 1 cut(s) 515
AciI CCGC 2 cut(s) 229, 559
AclWI GGATC 2 cut(s) 202, 796
AcsI RAATTY 1 cut(s) 1064
AcuI CTGAAG 2 cut(s) 104, 687
AfaI GTAC 2 cut(s) 1075, 1120
AfiI CCNNNNNNNGG 5 cut(s) 60, 515, 743, 759, 944
AgsI TTSAA 6 cut(s) 278, 323, 374, 499, 597, 731
AjnI CCWGG 1 cut(s) 742
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 5 cut(s) 124, 144, 188, 353, 495
AluI AGCT 5 cut(s) 124, 144, 188, 353, 495
AlwI GGATC 2 cut(s) 202, 796
AlwNI CAGNNNCTG 1 cut(s) 659
Ama87I CYCGRG 1 cut(s) 777
Aor13HI TCCGGA 1 cut(s) 515
AoxI GGCC 5 cut(s) 115, 506, 556, 583, 809
ApeKI GCWGC 1 cut(s) 839
ApoI RAATTY 1 cut(s) 1064
Asp700I GAANNNNTTC 1 cut(s) 1064
AspS9I GGNCC 2 cut(s) 584, 1126
AsuHPI GGTGA 3 cut(s) 101, 992, 1100
AsuII TTCGAA 2 cut(s) 1046, 1068
AvaI CYCGRG 1 cut(s) 777
AvaII GGWCC 1 cut(s) 1126
BauI CACGAG 1 cut(s) 547
BbsI GAAGAC 3 cut(s) 84, 405, 1035
BbvI GCAGC 1 cut(s) 851
BccI CCATC 5 cut(s) 107, 231, 261, 375, 388
BceAI ACGGC 1 cut(s) 598
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 744
BfmI CTRYAG 1 cut(s) 534
BisI GCNGC 3 cut(s) 230, 559, 840
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 3 cut(s) 231, 560, 841
BmcAI AGTACT 1 cut(s) 1120
Bme1390I CCNGG 1 cut(s) 744
Bme18I GGWCC 1 cut(s) 1126
BmeT110I CYCGRG 1 cut(s) 777
BmgT120I GGNCC 2 cut(s) 584, 1126
BmrFI CCNGG 1 cut(s) 744
BmsI GCATC 1 cut(s) 775
BpiI GAAGAC 3 cut(s) 84, 405, 1035
BpmI CTGGAG 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 125
Bpu14I TTCGAA 2 cut(s) 1046, 1068
BsaBI GATNNNNATC 3 cut(s) 252, 915, 987
BsaJI CCNNGG 1 cut(s) 742
BsaWI WCCGGW 1 cut(s) 515
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 515, 743, 759, 944
Bse1I ACTGG 3 cut(s) 18, 613, 1084
Bse8I GATNNNNATC 3 cut(s) 252, 915, 987
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 742
BseGI GGATG 3 cut(s) 103, 112, 787
BseJI GATNNNNATC 3 cut(s) 252, 915, 987
BseLI CCNNNNNNNGG 5 cut(s) 60, 515, 743, 759, 944
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 3 cut(s) 18, 613, 1084
BseRI GAGGAG 1 cut(s) 775
BseXI GCAGC 1 cut(s) 851
BsgI GTGCAG 1 cut(s) 858
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 5 cut(s) 117, 508, 558, 585, 811
BsiHKCI CYCGRG 1 cut(s) 777
BsiSI CCGG 1 cut(s) 516
BslI CCNNNNNNNGG 5 cut(s) 60, 515, 743, 759, 944
BsnI GGCC 5 cut(s) 117, 508, 558, 585, 811
BsoBI CYCGRG 1 cut(s) 777
Bsp119I TTCGAA 2 cut(s) 1046, 1068
Bsp13I TCCGGA 1 cut(s) 515
Bsp143I GATC 7 cut(s) 70, 194, 247, 421, 538, 801, 850
Bsp1720I GCTNAGC 1 cut(s) 125
BspACI CCGC 2 cut(s) 229, 559
BspANI GGCC 5 cut(s) 117, 508, 558, 585, 811
BspCNI CTCAG 1 cut(s) 117
BspEI TCCGGA 1 cut(s) 515
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 2 cut(s) 73, 172
BspPI GGATC 2 cut(s) 202, 796
BspT104I TTCGAA 2 cut(s) 1046, 1068
BsrI ACTGG 3 cut(s) 18, 613, 1084
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 7 cut(s) 70, 194, 247, 421, 538, 801, 850
BssSI CACGAG 1 cut(s) 547
Bst2BI CACGAG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 6 cut(s) 137, 593, 799, 902, 972, 1088
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 868
BstBI TTCGAA 2 cut(s) 1046, 1068
BstC8I GCNNGC 1 cut(s) 1097
BstDEI CTNAG 3 cut(s) 125, 309, 344
BstF5I GGATG 3 cut(s) 103, 112, 787
BstFNI CGCG 1 cut(s) 229
BstKTI GATC 7 cut(s) 73, 197, 250, 424, 541, 804, 853
BstMBI GATC 7 cut(s) 70, 194, 247, 421, 538, 801, 850
BstMWI GCNNNNNNNGC 1 cut(s) 868
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 2 cut(s) 722, 871
BstSCI CCNGG 1 cut(s) 742
BstSFI CTRYAG 1 cut(s) 534
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 851
BstV2I GAAGAC 3 cut(s) 84, 405, 1035
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 5 cut(s) 117, 508, 558, 585, 811
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 3 cut(s) 103, 112, 787
BtsIMutI CAGTG 2 cut(s) 907, 977
Cac8I GCNNGC 1 cut(s) 1097
CaiI CAGNNNCTG 1 cut(s) 659
CciI TCATGA 2 cut(s) 73, 172
Cfr13I GGNCC 2 cut(s) 584, 1126
Csp6I GTAC 2 cut(s) 1074, 1119
CviQI GTAC 2 cut(s) 1074, 1119
DdeI CTNAG 3 cut(s) 125, 309, 344
DpnI GATC 7 cut(s) 72, 196, 249, 423, 540, 803, 852
DpnII GATC 7 cut(s) 70, 194, 247, 421, 538, 801, 850
DraI TTTAAA 1 cut(s) 915
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 1126
Eco57I CTGAAG 2 cut(s) 104, 687
Eco88I CYCGRG 1 cut(s) 777
EcoRII CCWGG 1 cut(s) 742
EcoT22I ATGCAT 1 cut(s) 381
FalI AAGNNNNNCTT 4 cut(s) 102, 134, 868, 900
Fnu4HI GCNGC 3 cut(s) 230, 559, 840
FokI GGATG 3 cut(s) 110, 119, 794
Fsp4HI GCNGC 3 cut(s) 230, 559, 840
GluI GCNGC 3 cut(s) 230, 559, 840
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 5 cut(s) 117, 508, 558, 585, 811
HapII CCGG 1 cut(s) 516
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 3 cut(s) 785, 844, 954
HpaII CCGG 1 cut(s) 516
HphI GGTGA 3 cut(s) 101, 992, 1100
Hpy166II GTNNAC 2 cut(s) 290, 968
Hpy188I TCNGA 1 cut(s) 959
Hpy188III TCNNGA 8 cut(s) 74, 173, 192, 361, 516, 779, 848, 1124
Hpy8I GTNNAC 2 cut(s) 290, 968
Hpy99I CGWCG 2 cut(s) 1039, 1042
HpyAV CCTTC 7 cut(s) 57, 128, 175, 437, 519, 874, 1064
HpyCH4III ACNGT 6 cut(s) 137, 593, 799, 902, 972, 1088
HpyCH4V TGCA 5 cut(s) 272, 379, 722, 839, 871
HpyF10VI GCNNNNNNNGC 1 cut(s) 868
HpyF3I CTNAG 3 cut(s) 125, 309, 344
Kpn2I TCCGGA 1 cut(s) 515
Kzo9I GATC 7 cut(s) 70, 194, 247, 421, 538, 801, 850
LmnI GCTCC 3 cut(s) 149, 185, 384
Lsp1109I GCAGC 1 cut(s) 851
LweI GCATC 1 cut(s) 775
MaeIII GTNAC 5 cut(s) 714, 902, 921, 1082, 1088
MalI GATC 7 cut(s) 72, 196, 249, 423, 540, 803, 852
MboI GATC 7 cut(s) 70, 194, 247, 421, 538, 801, 850
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 1 cut(s) 194
MluCI AATT 4 cut(s) 323, 771, 829, 1064
MlyI GAGTC 1 cut(s) 794
Mph1103I ATGCAT 1 cut(s) 381
MroI TCCGGA 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 1064
MseI TTAA 3 cut(s) 336, 521, 914
MslI CAYNNNNRTG 2 cut(s) 20, 948
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 1 cut(s) 744
MunI CAATTG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 744
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 868
NdeII GATC 7 cut(s) 70, 194, 247, 421, 538, 801, 850
NmuCI GTSAC 3 cut(s) 902, 921, 1088
NsiI ATGCAT 1 cut(s) 381
NspI RCATGY 2 cut(s) 722, 871
NspV TTCGAA 2 cut(s) 1046, 1068
PagI TCATGA 2 cut(s) 73, 172
PcsI WCGNNNNNNNCGW 1 cut(s) 1043
PdmI GAANNNNTTC 1 cut(s) 1064
PfeI GAWTC 2 cut(s) 844, 954
PflMI CCANNNNNTGG 1 cut(s) 944
PkrI GCNGC 3 cut(s) 231, 560, 841
PleI GAGTC 1 cut(s) 793
PpsI GAGTC 1 cut(s) 793
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspPI GGNCC 2 cut(s) 584, 1126
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 2 cut(s) 1075, 1120
RsaNI GTAC 2 cut(s) 1074, 1119
RseI CAYNNNNRTG 2 cut(s) 20, 948
SaqAI TTAA 3 cut(s) 336, 521, 914
SatI GCNGC 3 cut(s) 230, 559, 840
Sau3AI GATC 7 cut(s) 70, 194, 247, 421, 538, 801, 850
Sau96I GGNCC 2 cut(s) 584, 1126
ScaI AGTACT 1 cut(s) 1120
SchI GAGTC 1 cut(s) 794
ScrFI CCNGG 1 cut(s) 744
SfaNI GCATC 1 cut(s) 775
SfcI CTRYAG 1 cut(s) 534
SfuI TTCGAA 2 cut(s) 1046, 1068
SinI GGWCC 1 cut(s) 1126
SmiI ATTTAAAT 1 cut(s) 915
SmiMI CAYNNNNRTG 2 cut(s) 20, 948
Sse9I AATT 4 cut(s) 323, 771, 829, 1064
SsiI CCGC 2 cut(s) 229, 559
SspI AATATT 2 cut(s) 637, 691
StyD4I CCNGG 1 cut(s) 742
SwaI ATTTAAAT 1 cut(s) 915
TaaI ACNGT 6 cut(s) 137, 593, 799, 902, 972, 1088
TaqI TCGA 4 cut(s) 235, 847, 1046, 1068
TasI AATT 4 cut(s) 323, 771, 829, 1064
TatI WGTACW 1 cut(s) 1118
TauI GCSGC 2 cut(s) 232, 561
TfiI GAWTC 2 cut(s) 844, 954
Tru1I TTAA 3 cut(s) 336, 521, 914
Tru9I TTAA 3 cut(s) 336, 521, 914
TscAI CASTG 2 cut(s) 907, 977
TseFI GTSAC 3 cut(s) 902, 921, 1088
TseI GCWGC 1 cut(s) 839
Tsp45I GTSAC 3 cut(s) 902, 921, 1088
TspDTI ATGAA 6 cut(s) 17, 90, 123, 189, 257, 344
TspRI CASTG 2 cut(s) 907, 977
Van91I CCANNNNNTGG 1 cut(s) 944
VpaK11BI GGWCC 1 cut(s) 1126
XapI RAATTY 1 cut(s) 1064
XceI RCATGY 2 cut(s) 722, 871
XmnI GAANNNNTTC 1 cut(s) 1064
ZrmI AGTACT 1 cut(s) 1120
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.