FvH4_7g24880
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012871
Physical Location & Seq
Reverse (-)
19111478 .. 19113568
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24880.t1

Sequence Viewer

Length: 1179 bp
ATGTTCATCTCAAGATCCAGCAATACTGAGATCAAGCAAAACAGAAAGAGATCGATGAAGAAATCAAGTGAAGGTACCAGTCAAGCTCCTGAAGCAAGTTTATCATCTTCTAGCCAGAGCAAGAAGGAACACGATGTCGATGAGGAGAAGGAGGAGGAGGATGAGGAGGTGGTGGATAAAGATAGACAGCAGCAGCCCAGCAGCAAGAATGGCGGTGTTAGCTCCAGCAGCAGCACCATCGAAGAGAATGAAAAGTCGAAGGGCGCTTCAGGCGGTGGATCTGTACGACAGTATGTGCGTTCCAAGAACTCAAGGCTTCGATGGACTCCTGATCTCCATCTTCGTTTTATTCATGCGGTTGAAAGATTAGGAGGGCAAGAGAGAGCAACACCAAAATTGGTTCTTCAATTGATGAATATCAAGGGTCTTAGCATAGCTCATGTCAAGAGCCATCTTCAAATGTACAGGAGCAAGAAGATGGAAGACCCAAACCAAGTTCTCTCAGAGCAAGGCTTCTACACAGAAGGTGGAGATAACCATATATACAACCTTACTCAACTCTCCATGCTACAAAGTCTCAACCACCAATGGCCTTCTTCAGGATTAAGATATGGTGCTGATGCCTCTTGGCGCGGCCGCCACGACAACCGCCACCAGATTTATAGCCCTTACAGCAGGACTCAGCTATTTGATCATCATAATACAAGAGTTTCAGGACTTTATGGTTCAGTTGCTGAGAGAATATTTGGAAGCAACAACAGTACTAGTACAACAACTACTACCGCTGCTACTGCACCGAACACTATTCAATTTCATACAAATCATATTCAATCGGCTTGGAGATCAAGGCATCAAATCAGTATTCGAGTCCACGATGAGCTCCGACCTTTCAACAGGCACTCATGGCAAGATCACAGTCGCTTGGACAACAGTAATGAAACTCGAAACACACTGAAAAGAAAGGCTCCGGAATCTTCAGATAATACTTCTGATTTGGATTTGAACTTATCACTGAAAGTTCCCGCAACAGAAGAAAAGGTACTGGGATTCGGTCTGTCTCTTTCTCTTTCCCCATCTTCATCGTCCTCGAAGCTCGGCTTGATGAAGAAGCAAGAAGGTAATGGTGATCCTGATAGGGAGCATGGGAGAAACGCAAGTACTCTGGACCTCACTCTATGA

Protein Analysis

393

Amino Acids

44.05

Weight (kDa)

9.26

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 105 - 156 1.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 633
AccIII TCCGGA 1 cut(s) 967
AciI CCGC 8 cut(s) 213, 273, 356, 633, 637, 649, 783, 1023
AclWI GGATC 3 cut(s) 9, 286, 1121
AcoI YGGCCR 1 cut(s) 634
AcuI CTGAAG 4 cut(s) 111, 252, 582, 960
AfaI GTAC 7 cut(s) 76, 285, 464, 763, 769, 1041, 1159
AfiI CCNNNNNNNGG 1 cut(s) 599
AgsI TTSAA 7 cut(s) 362, 407, 458, 809, 830, 892, 1003
AhlI ACTAGT 1 cut(s) 764
AluBI AGCT 6 cut(s) 86, 222, 437, 685, 880, 1093
AluI AGCT 6 cut(s) 86, 222, 437, 685, 880, 1093
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 2 cut(s) 581, 1062
AlwI GGATC 3 cut(s) 9, 286, 1121
AlwNI CAGNNNCTG 1 cut(s) 734
Aor13HI TCCGGA 1 cut(s) 967
AoxI GGCC 2 cut(s) 590, 634
ApeKI GCWGC 6 cut(s) 190, 193, 201, 228, 231, 785
Asp718I GGTACC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 266, 633
AspS9I GGNCC 1 cut(s) 1165
AsuHPI GGTGA 1 cut(s) 1136
AvaII GGWCC 1 cut(s) 1165
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 882
BarI GAAGNNNNNNTAC 2 cut(s) 1023, 1055
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 6 cut(s) 202, 205, 213, 240, 243, 772
BccI CCATC 6 cut(s) 245, 315, 345, 459, 472, 1081
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 2 cut(s) 581, 1062
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 2 cut(s) 111, 765
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 8 cut(s) 191, 194, 202, 229, 232, 634, 637, 786
BlsI GCNGC 8 cut(s) 192, 195, 203, 230, 233, 635, 638, 787
BmcAI AGTACT 2 cut(s) 763, 1159
Bme18I GGWCC 1 cut(s) 1165
BmgT120I GGNCC 1 cut(s) 1165
BmiI GGNNCC 2 cut(s) 76, 966
BmrI ACTGGG 1 cut(s) 1052
BmsI GCATC 2 cut(s) 610, 859
BmuI ACTGGG 1 cut(s) 1052
BpiI GAAGAC 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 295
Bsa29I ATCGAT 1 cut(s) 53
BsaBI GATNNNNATC 2 cut(s) 336, 416
BsaWI WCCGGW 1 cut(s) 967
Bsc4I CCNNNNNNNGG 1 cut(s) 599
Bse1I ACTGG 2 cut(s) 78, 1047
Bse8I GATNNNNATC 2 cut(s) 336, 416
BseAI TCCGGA 1 cut(s) 967
BseCI ATCGAT 1 cut(s) 53
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 2 cut(s) 336, 416
BseLI CCNNNNNNNGG 1 cut(s) 599
BseMII CTCAG 4 cut(s) 18, 516, 695, 726
BseNI ACTGG 2 cut(s) 78, 1047
BseRI GAGGAG 4 cut(s) 158, 167, 170, 179
BseX3I CGGCCG 1 cut(s) 634
BseXI GCAGC 6 cut(s) 202, 205, 213, 240, 243, 772
BseYI CCCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 1 cut(s) 633
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 2 cut(s) 592, 636
BshNI GGYRCC 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 882
BsiSI CCGG 1 cut(s) 968
BslI CCNNNNNNNGG 1 cut(s) 599
BsmAI GTCTC 2 cut(s) 581, 1062
BsnI GGCC 2 cut(s) 592, 636
Bsp1286I GDGCHC 1 cut(s) 882
Bsp13I TCCGGA 1 cut(s) 967
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 9 cut(s) 14, 30, 50, 278, 331, 691, 842, 910, 1126
BspACI CCGC 8 cut(s) 213, 273, 356, 633, 637, 649, 783, 1023
BspANI GGCC 2 cut(s) 592, 636
BspCNI CTCAG 4 cut(s) 19, 515, 694, 727
BspDI ATCGAT 1 cut(s) 53
BspEI TCCGGA 1 cut(s) 967
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 2 cut(s) 76, 966
BspPI GGATC 3 cut(s) 9, 286, 1121
BspT107I GGYRCC 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 2 cut(s) 78, 1047
BssMI GATC 9 cut(s) 14, 30, 50, 278, 331, 691, 842, 910, 1126
Bst4CI ACNGT 4 cut(s) 291, 761, 917, 932
Bst6I CTCTTC 1 cut(s) 237
BstAUI TGTACA 1 cut(s) 462
BstDEI CTNAG 5 cut(s) 27, 428, 502, 681, 735
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 1 cut(s) 633
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 2 cut(s) 266, 633
BstKTI GATC 9 cut(s) 17, 33, 53, 281, 334, 694, 845, 913, 1129
BstMAI GTCTC 2 cut(s) 581, 1062
BstMBI GATC 9 cut(s) 14, 30, 50, 278, 331, 691, 842, 910, 1126
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 8 cut(s) 92, 210, 219, 228, 270, 672, 791, 904
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 6 cut(s) 202, 205, 213, 240, 243, 772
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 2 cut(s) 14, 278
BstYI RGATCY 2 cut(s) 14, 278
BstZI CGGCCG 1 cut(s) 634
Bsu15I ATCGAT 1 cut(s) 53
BsuRI GGCC 2 cut(s) 592, 636
BsuTUI ATCGAT 1 cut(s) 53
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 950, 1010
CaiI CAGNNNCTG 1 cut(s) 734
CciNI GCGGCCGC 1 cut(s) 634
CfoI GCGC 2 cut(s) 266, 633
Cfr13I GGNCC 1 cut(s) 1165
ClaI ATCGAT 1 cut(s) 53
Csp6I GTAC 7 cut(s) 75, 284, 463, 762, 768, 1040, 1158
CviAII CATG 5 cut(s) 353, 440, 565, 903, 1142
CviQI GTAC 7 cut(s) 75, 284, 463, 762, 768, 1040, 1158
DdeI CTNAG 5 cut(s) 27, 428, 502, 681, 735
DpnI GATC 9 cut(s) 16, 32, 52, 280, 333, 693, 844, 912, 1128
DpnII GATC 9 cut(s) 14, 30, 50, 278, 331, 691, 842, 910, 1126
EaeI YGGCCR 1 cut(s) 634
EagI CGGCCG 1 cut(s) 634
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 880
EclXI CGGCCG 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 882
Eco47I GGWCC 1 cut(s) 1165
Eco52I CGGCCG 1 cut(s) 634
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 4 cut(s) 111, 252, 582, 960
EcoICRI GAGCTC 1 cut(s) 880
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoT38I GRGCYC 1 cut(s) 882
FaeI CATG 5 cut(s) 356, 443, 568, 906, 1145
FalI AAGNNNNNCTT 2 cut(s) 1082, 1114
FatI CATG 5 cut(s) 352, 439, 564, 902, 1141
FauI CCCGC 1 cut(s) 1030
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 8 cut(s) 191, 194, 202, 229, 232, 634, 637, 786
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 8 cut(s) 191, 194, 202, 229, 232, 634, 637, 786
FspBI CTAG 2 cut(s) 111, 765
GlaI GCGC 2 cut(s) 265, 632
GluI GCNGC 8 cut(s) 191, 194, 202, 229, 232, 634, 637, 786
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 2 cut(s) 592, 636
HapII CCGG 1 cut(s) 968
HhaI GCGC 2 cut(s) 266, 633
Hin1II CATG 5 cut(s) 356, 443, 568, 906, 1145
Hin6I GCGC 2 cut(s) 264, 631
HinP1I GCGC 2 cut(s) 264, 631
HinfI GANTC 5 cut(s) 325, 679, 867, 971, 1047
HpaII CCGG 1 cut(s) 968
HphI GGTGA 1 cut(s) 1136
Hpy166II GTNNAC 1 cut(s) 871
Hpy188I TCNGA 4 cut(s) 505, 884, 979, 991
Hpy188III TCNNGA 9 cut(s) 12, 89, 329, 445, 600, 714, 968, 1130, 1163
Hpy8I GTNNAC 1 cut(s) 871
HpyAV CCTTC 7 cut(s) 65, 118, 142, 253, 518, 603, 1109
HpyCH4III ACNGT 4 cut(s) 291, 761, 917, 932
HpyCH4V TGCA 1 cut(s) 794
HpyF10VI GCNNNNNNNGC 8 cut(s) 92, 210, 219, 228, 270, 672, 791, 904
HpyF3I CTNAG 5 cut(s) 27, 428, 502, 681, 735
Hsp92II CATG 5 cut(s) 356, 443, 568, 906, 1145
HspAI GCGC 2 cut(s) 264, 631
Kpn2I TCCGGA 1 cut(s) 967
KpnI GGTACC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 9 cut(s) 14, 30, 50, 278, 331, 691, 842, 910, 1126
LmnI GCTCC 6 cut(s) 91, 227, 468, 885, 970, 1138
Lsp1109I GCAGC 6 cut(s) 202, 205, 213, 240, 243, 772
LweI GCATC 2 cut(s) 610, 859
MaeI CTAG 2 cut(s) 111, 765
MalI GATC 9 cut(s) 16, 32, 52, 280, 333, 693, 844, 912, 1128
MboI GATC 9 cut(s) 14, 30, 50, 278, 331, 691, 842, 910, 1126
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 2 cut(s) 14, 278
MhlI GDGCHC 1 cut(s) 882
MluCI AATT 3 cut(s) 395, 407, 809
MlyI GAGTC 3 cut(s) 319, 673, 876
MmeI TCCRAC 1 cut(s) 907
MroI TCCGGA 1 cut(s) 967
MseI TTAA 1 cut(s) 605
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 1 cut(s) 968
MunI CAATTG 1 cut(s) 407
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 8 cut(s) 92, 210, 219, 228, 270, 672, 791, 904
NdeII GATC 9 cut(s) 14, 30, 50, 278, 331, 691, 842, 910, 1126
NlaIII CATG 5 cut(s) 356, 443, 568, 906, 1145
NlaIV GGNNCC 2 cut(s) 76, 966
NmeAIII GCCGAG 1 cut(s) 1074
NotI GCGGCCGC 1 cut(s) 634
PfeI GAWTC 2 cut(s) 971, 1047
PkrI GCNGC 8 cut(s) 192, 195, 203, 230, 233, 635, 638, 787
PleI GAGTC 3 cut(s) 319, 673, 875
PpsI GAGTC 3 cut(s) 319, 673, 875
Psp124BI GAGCTC 1 cut(s) 882
PspFI CCCAGC 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 76, 966
PspPI GGNCC 1 cut(s) 1165
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 2 cut(s) 14, 278
RsaI GTAC 7 cut(s) 76, 285, 464, 763, 769, 1041, 1159
RsaNI GTAC 7 cut(s) 75, 284, 463, 762, 768, 1040, 1158
SacI GAGCTC 1 cut(s) 882
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 8 cut(s) 191, 194, 202, 229, 232, 634, 637, 786
Sau3AI GATC 9 cut(s) 14, 30, 50, 278, 331, 691, 842, 910, 1126
Sau96I GGNCC 1 cut(s) 1165
ScaI AGTACT 2 cut(s) 763, 1159
SchI GAGTC 3 cut(s) 319, 673, 876
SduI GDGCHC 1 cut(s) 882
SfaNI GCATC 2 cut(s) 610, 859
SinI GGWCC 1 cut(s) 1165
SmlI CTYRAG 2 cut(s) 10, 310
SmoI CTYRAG 2 cut(s) 10, 310
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 3 cut(s) 395, 407, 809
SsiI CCGC 8 cut(s) 213, 273, 356, 633, 637, 649, 783, 1023
SspI AATATT 1 cut(s) 744
SspMI CTAG 2 cut(s) 111, 765
SstI GAGCTC 1 cut(s) 882
TaaI ACNGT 4 cut(s) 291, 761, 917, 932
TaqI TCGA 8 cut(s) 53, 138, 240, 257, 319, 865, 943, 1088
TaqII GACCGA 1 cut(s) 1040
TasI AATT 3 cut(s) 395, 407, 809
TatI WGTACW 4 cut(s) 462, 761, 767, 1157
TauI GCSGC 2 cut(s) 636, 639
TfiI GAWTC 2 cut(s) 971, 1047
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 2 cut(s) 957, 1017
TseI GCWGC 6 cut(s) 190, 193, 201, 228, 231, 785
TspDTI ATGAA 8 cut(s) 71, 264, 341, 428, 803, 951, 1068, 1118
TspRI CASTG 2 cut(s) 957, 1017
VpaK11BI GGWCC 1 cut(s) 1165
XagI CCTNNNNNAGG 1 cut(s) 597
XspI CTAG 2 cut(s) 111, 765
ZrmI AGTACT 2 cut(s) 763, 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.