MD01G1156500.v1.1
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0012871
Physical Location & Seq
Reverse (-)
26395113 .. 26396838
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1156500.v1.1.491

Sequence Viewer

Length: 1110 bp
ATGGAAGAAGTTTCTAAATCAAGCCCTTCTACCAGCAAGAAGGAATACGATCATGAAGACGATGAGGGTGAAGAGGATGAGGTGGATGAAGATGGCCTTCAGCTGAGCAATAACGGTGTCAGCTCCAGCAATAGCACCATTGACGAAAACCATGAAAAGAAGGGAGCTTCTGGATCTGTAAGGCAGTATGTTCGTTCCAAGACATCGCGGCTTCGATGGACACCTGATCTCCATCTTCGCTTTGTTCATGCAGTTGAAAGATTAGGTGGACAAGAAAGAGCAACTCCTAAGTTGGTTCTTCAATTGATGAATGTTAAGGGTCTTAGTATAGCTCATGTCAAGAGCCATCTTCAAATGCATAGGAGCAAGAAGATGGAAGACCCCAATCAAGATCATGCAGGATTTTTTATGGAAGGTGGAGATAACCAACTTTACAACCTTACTCAACTCTCCATGCTACAAAGCTTAAAAAAATGGCCTTCTTCCGGATTAAGATATGGTGCTACAGATCATTCCTCGTGGCAAGGCCGCCACCACCACCACCAGATATACGGCCCATACCGTTCAAGTAGGACTACTGCACTACTTGATCATAATACCAGAAATATTGAACTTTATGGTTCAGTTGCTGAAAGAATACTTGGAAGCAACAATAACAATATTAGGACTACTTCAGCAAATCAGTTACATACAAATCTTCCATCTCCCAACCCTGGACAAATCACTTGGAGAAGGCATCAAATTACTCGGGATGAGTCATGTCAAACTGTGATCCACAGGCCATGCCAAGATCATCATAGTTGGAGTGCAGCGATTCGAGATCATCAAGGGCAAAACATGCTGAAAAGAATGGCTTTCGACACAGACAACAGTGACTTGGATTTAAATCTGTCACTAAAAGTTCCACCAAAACATGGTCATGGATTCGGAAAAGGTTTACAGTGTGGTGGTGATAATCATCAAAAACTACACATGGGTTGTAGTTTATCTCTCTCTTTGTCCTCGTCGTCATCTTCGAAACTTGGCGTGAAGAAATTAGAAGGTACTACTGGTTACGGTGACAGCAAGCACGGGAAGAACATGGCAAGTACTCTGGACCTCACTCTATGA

Protein Analysis

370

Amino Acids

41.26

Weight (kDa)

8.26

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 70 - 121 4.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 914
AccII CGCG 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 485
AciI CCGC 2 cut(s) 208, 529
AclWI GGATC 2 cut(s) 181, 766
AcuI CTGAAG 2 cut(s) 83, 657
AfaI GTAC 2 cut(s) 1045, 1090
AfiI CCNNNNNNNGG 3 cut(s) 485, 713, 914
AgsI TTSAA 5 cut(s) 257, 302, 353, 567, 611
AjnI CCWGG 1 cut(s) 712
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
AluBI AGCT 5 cut(s) 103, 123, 167, 332, 465
AluI AGCT 5 cut(s) 103, 123, 167, 332, 465
AlwI GGATC 2 cut(s) 181, 766
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 747
Aor13HI TCCGGA 1 cut(s) 485
AoxI GGCC 5 cut(s) 94, 476, 526, 553, 779
ApeKI GCWGC 1 cut(s) 809
AspS9I GGNCC 2 cut(s) 554, 1096
AsuHPI GGTGA 3 cut(s) 80, 962, 1070
AsuII TTCGAA 1 cut(s) 1016
AvaI CYCGRG 1 cut(s) 747
AvaII GGWCC 1 cut(s) 1096
BauI CACGAG 1 cut(s) 517
BbsI GAAGAC 2 cut(s) 63, 384
BbvI GCAGC 1 cut(s) 821
BccI CCATC 6 cut(s) 86, 210, 240, 354, 367, 709
BceAI ACGGC 1 cut(s) 568
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 714
BclI TGATCA 1 cut(s) 589
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 3 cut(s) 209, 529, 810
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 3 cut(s) 210, 530, 811
BmcAI AGTACT 1 cut(s) 1090
Bme1390I CCNGG 1 cut(s) 714
Bme18I GGWCC 1 cut(s) 1096
BmeT110I CYCGRG 1 cut(s) 747
BmgT120I GGNCC 2 cut(s) 554, 1096
BmrFI CCNGG 1 cut(s) 714
BmsI GCATC 1 cut(s) 745
BpiI GAAGAC 2 cut(s) 63, 384
BpmI CTGGAG 1 cut(s) 109
Bpu1102I GCTNAGC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 1016
BsaBI GATNNNNATC 3 cut(s) 231, 885, 957
BsaJI CCNNGG 1 cut(s) 712
BsaWI WCCGGW 1 cut(s) 485
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 3 cut(s) 485, 713, 914
Bse1I ACTGG 1 cut(s) 1054
Bse8I GATNNNNATC 3 cut(s) 231, 885, 957
BseAI TCCGGA 1 cut(s) 485
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 1 cut(s) 712
BseGI GGATG 3 cut(s) 82, 91, 757
BseJI GATNNNNATC 3 cut(s) 231, 885, 957
BseLI CCNNNNNNNGG 3 cut(s) 485, 713, 914
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 1054
BseXI GCAGC 1 cut(s) 821
BsgI GTGCAG 2 cut(s) 564, 828
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 5 cut(s) 96, 478, 528, 555, 781
BsiHKCI CYCGRG 1 cut(s) 747
BsiSI CCGG 1 cut(s) 486
BslI CCNNNNNNNGG 3 cut(s) 485, 713, 914
BsnI GGCC 5 cut(s) 96, 478, 528, 555, 781
BsoBI CYCGRG 1 cut(s) 747
Bsp119I TTCGAA 1 cut(s) 1016
Bsp13I TCCGGA 1 cut(s) 485
Bsp143I GATC 9 cut(s) 49, 173, 226, 391, 508, 589, 771, 790, 820
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 2 cut(s) 208, 529
BspANI GGCC 5 cut(s) 96, 478, 528, 555, 781
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 485
BspFNI CGCG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 52
BspPI GGATC 2 cut(s) 181, 766
BspT104I TTCGAA 1 cut(s) 1016
BsrI ACTGG 1 cut(s) 1054
BssECI CCNNGG 1 cut(s) 712
BssMI GATC 9 cut(s) 49, 173, 226, 391, 508, 589, 771, 790, 820
BssSI CACGAG 1 cut(s) 517
Bst2BI CACGAG 1 cut(s) 517
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 6 cut(s) 116, 563, 769, 872, 942, 1058
Bst6I CTCTTC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 838
BstBI TTCGAA 1 cut(s) 1016
BstC8I GCNNGC 1 cut(s) 1067
BstDEI CTNAG 3 cut(s) 104, 288, 323
BstF5I GGATG 3 cut(s) 82, 91, 757
BstFNI CGCG 1 cut(s) 208
BstKTI GATC 9 cut(s) 52, 176, 229, 394, 511, 592, 774, 793, 823
BstMBI GATC 9 cut(s) 49, 173, 226, 391, 508, 589, 771, 790, 820
BstMWI GCNNNNNNNGC 1 cut(s) 838
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 1 cut(s) 712
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 821
BstV2I GAAGAC 2 cut(s) 63, 384
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 5 cut(s) 96, 478, 528, 555, 781
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 82, 91, 757
BtsIMutI CAGTG 2 cut(s) 877, 947
Cac8I GCNNGC 1 cut(s) 1067
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 554, 1096
Csp6I GTAC 2 cut(s) 1044, 1089
CviQI GTAC 2 cut(s) 1044, 1089
DdeI CTNAG 3 cut(s) 104, 288, 323
DpnI GATC 9 cut(s) 51, 175, 228, 393, 510, 591, 773, 792, 822
DpnII GATC 9 cut(s) 49, 173, 226, 391, 508, 589, 771, 790, 820
DraI TTTAAA 1 cut(s) 885
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 1096
Eco57I CTGAAG 2 cut(s) 83, 657
Eco88I CYCGRG 1 cut(s) 747
EcoRII CCWGG 1 cut(s) 712
EcoT22I ATGCAT 1 cut(s) 360
FalI AAGNNNNNCTT 4 cut(s) 81, 113, 838, 870
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 3 cut(s) 209, 529, 810
FokI GGATG 3 cut(s) 89, 98, 764
Fsp4HI GCNGC 3 cut(s) 209, 529, 810
GluI GCNGC 3 cut(s) 209, 529, 810
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 5 cut(s) 96, 478, 528, 555, 781
HapII CCGG 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 3 cut(s) 755, 814, 924
HpaII CCGG 1 cut(s) 486
HphI GGTGA 3 cut(s) 80, 962, 1070
Hpy166II GTNNAC 2 cut(s) 269, 938
Hpy188I TCNGA 1 cut(s) 929
Hpy188III TCNNGA 8 cut(s) 53, 171, 340, 389, 486, 749, 818, 1094
Hpy8I GTNNAC 2 cut(s) 269, 938
Hpy99I CGWCG 1 cut(s) 1009
HpyAV CCTTC 8 cut(s) 34, 36, 107, 154, 407, 489, 726, 1034
HpyCH4III ACNGT 6 cut(s) 116, 563, 769, 872, 942, 1058
HpyCH4V TGCA 5 cut(s) 251, 358, 398, 581, 809
HpyF10VI GCNNNNNNNGC 1 cut(s) 838
HpyF3I CTNAG 3 cut(s) 104, 288, 323
Kpn2I TCCGGA 1 cut(s) 485
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 9 cut(s) 49, 173, 226, 391, 508, 589, 771, 790, 820
LmnI GCTCC 3 cut(s) 128, 164, 363
Lsp1109I GCAGC 1 cut(s) 821
LweI GCATC 1 cut(s) 745
MaeIII GTNAC 5 cut(s) 684, 872, 891, 1052, 1058
MalI GATC 9 cut(s) 51, 175, 228, 393, 510, 591, 773, 792, 822
MboI GATC 9 cut(s) 49, 173, 226, 391, 508, 589, 771, 790, 820
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 1 cut(s) 173
MluCI AATT 3 cut(s) 302, 741, 1034
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 1 cut(s) 782
MnlI CCTC 6 cut(s) 58, 67, 73, 526, 1012, 1109
Mph1103I ATGCAT 1 cut(s) 360
MroI TCCGGA 1 cut(s) 485
MseI TTAA 4 cut(s) 315, 467, 491, 884
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 1 cut(s) 486
MspR9I CCNGG 1 cut(s) 714
MunI CAATTG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 838
NdeII GATC 9 cut(s) 49, 173, 226, 391, 508, 589, 771, 790, 820
NmuCI GTSAC 3 cut(s) 872, 891, 1058
NsiI ATGCAT 1 cut(s) 360
NspI RCATGY 1 cut(s) 841
NspV TTCGAA 1 cut(s) 1016
PagI TCATGA 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 1013
PfeI GAWTC 2 cut(s) 814, 924
PflMI CCANNNNNTGG 1 cut(s) 914
PkrI GCNGC 3 cut(s) 210, 530, 811
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 712
PspPI GGNCC 2 cut(s) 554, 1096
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 2 cut(s) 1045, 1090
RsaNI GTAC 2 cut(s) 1044, 1089
RseI CAYNNNNRTG 1 cut(s) 918
SaqAI TTAA 4 cut(s) 315, 467, 491, 884
SatI GCNGC 3 cut(s) 209, 529, 810
Sau3AI GATC 9 cut(s) 49, 173, 226, 391, 508, 589, 771, 790, 820
Sau96I GGNCC 2 cut(s) 554, 1096
ScaI AGTACT 1 cut(s) 1090
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 1 cut(s) 714
SfaNI GCATC 1 cut(s) 745
SfcI CTRYAG 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 1016
SinI GGWCC 1 cut(s) 1096
SmiI ATTTAAAT 1 cut(s) 885
SmiMI CAYNNNNRTG 1 cut(s) 918
Sse9I AATT 3 cut(s) 302, 741, 1034
SsiI CCGC 2 cut(s) 208, 529
SspI AATATT 2 cut(s) 607, 661
StyD4I CCNGG 1 cut(s) 712
SwaI ATTTAAAT 1 cut(s) 885
TaaI ACNGT 6 cut(s) 116, 563, 769, 872, 942, 1058
TaqI TCGA 4 cut(s) 214, 817, 858, 1016
TasI AATT 3 cut(s) 302, 741, 1034
TatI WGTACW 1 cut(s) 1088
TauI GCSGC 2 cut(s) 211, 531
TfiI GAWTC 2 cut(s) 814, 924
Tru1I TTAA 4 cut(s) 315, 467, 491, 884
Tru9I TTAA 4 cut(s) 315, 467, 491, 884
TscAI CASTG 2 cut(s) 877, 947
TseFI GTSAC 3 cut(s) 872, 891, 1058
TseI GCWGC 1 cut(s) 809
Tsp45I GTSAC 3 cut(s) 872, 891, 1058
TspDTI ATGAA 5 cut(s) 69, 102, 168, 236, 323
TspRI CASTG 2 cut(s) 877, 947
Van91I CCANNNNNTGG 1 cut(s) 914
VpaK11BI GGWCC 1 cut(s) 1096
XceI RCATGY 1 cut(s) 841
ZrmI AGTACT 1 cut(s) 1090
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.