Rorug01G0359400
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012871
Physical Location & Seq
Forward (+)
47534504 .. 47535610
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0359400.1

Sequence Viewer

Length: 1041 bp
ATGAAGGATTTCTATGCTTTTGGAGGAGTTTGCAGATCATGGAGATCAGCAGCGATCAAGGAAAACTCTAATACAGGTCTGAGACTACAGCATAAAGTTCCAGTCCTCCTTCTTCCAAAGGAGATCAATGCTCCCATCCGCAATTTTTACAGCTTGACAAAAGGTCAGATTTACCAACTTGATTTACCAGAAACTATGGGCAAGTTTTGCTATTCTTCTTTAGGATGGTTATTGACTGTATTCGAAGATTTTTCCAAACTTCATCTTTTTAATCCACTAACCCATGTCCAAATTGAGCTGCCTCGTCTGCGGCCAAAAATCATGAATCTTCGAAATATAAACAAGTTTGTATTATCATCGAGTCCTTCTTGGACATCGAATTATGGGGTCATGATTGTATCATATCAGAAATTGGCATTTTACAAGCCGGGGTACAACAATGACAAATGGACTTCTGTATCTTTAGGGCCATTAATAATTTTAACGGATGCAATTTATTATAAGGGCCAATTTTATGTCGTGGACTATCTTGGTATGGTTTTTGCCTGTGAGATAGAAGATCCTAAAAATGCACAAATCAGGGTTGTTGCTGCAGAGATTCCAAAGGAAGTACTGTTCGATCCTGAGATTCATTTTAAATTACCATGTTTAGTGGAATCTGCAACAGGGACCTTGTTATTGGTTATCTCTTTATTTGAAGAAGGCAAAACTGAATCAACTGTCGGTTGTAGGGTGTTCGAGGTGCCATTTGATGATGGCAATTCATGGGCAAAATCAGAAGTAAAGAATTTGGGGAATAGAACCTTATTTTTGGGTGCAAACAATTCTTCATTCTCGATTGAGGCTTTAGATGATTCTATATGCAAAGCCAATTGTATTTATTTCTTAAATCGGAGTCATGTCTCCGATGAAGGGCACATCGACATTGGCATTTACTATATGAAGGATGCAAAAATAGAGCGACACTTTGAAGCATTTCCAGATTTTCAGTACAAAGGCAGATCAATAACATCGCATTCATGGCTTCAACCGAGTTTCTAA

Protein Analysis

346

Amino Acids

39.46

Weight (kDa)

7.07

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 49 - 312 1.6e-47 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AccB1I GGYRCC 1 cut(s) 742
AciI CCGC 2 cut(s) 139, 310
AclWI GGATC 2 cut(s) 554, 614
AcoI YGGCCR 1 cut(s) 311
AcsI RAATTY 1 cut(s) 787
AfaI GTAC 3 cut(s) 434, 612, 992
AfiI CCNNNNNNNGG 1 cut(s) 912
AgsI TTSAA 3 cut(s) 698, 971, 1028
AhdI GACNNNNNGTC 1 cut(s) 162
AloI GAACNNNNNNTCC 2 cut(s) 599, 631
AluBI AGCT 2 cut(s) 153, 298
AluI AGCT 2 cut(s) 153, 298
Alw26I GTCTC 2 cut(s) 76, 907
AlwI GGATC 2 cut(s) 554, 614
AoxI GGCC 3 cut(s) 311, 467, 505
ApeKI GCWGC 3 cut(s) 50, 298, 590
ApoI RAATTY 1 cut(s) 787
AseI ATTAAT 1 cut(s) 473
Asp700I GAANNNNTTC 2 cut(s) 8, 975
AspS9I GGNCC 3 cut(s) 467, 505, 669
AsuC2I CCSGG 1 cut(s) 429
AsuII TTCGAA 2 cut(s) 243, 331
AvaII GGWCC 1 cut(s) 669
BaeGI GKGCMC 1 cut(s) 918
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BanI GGYRCC 1 cut(s) 742
BbvI GCAGC 3 cut(s) 62, 285, 577
BccI CCATC 3 cut(s) 143, 219, 749
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 2 cut(s) 76, 907
BfmI CTRYAG 2 cut(s) 86, 591
BisI GCNGC 4 cut(s) 51, 299, 311, 591
BlsI GCNGC 4 cut(s) 52, 300, 312, 592
BmcAI AGTACT 1 cut(s) 612
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 669
BmeRI GACNNNNNGTC 1 cut(s) 162
BmgT120I GGNCC 3 cut(s) 467, 505, 669
BmiI GGNNCC 2 cut(s) 670, 744
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 478, 937
Bpu14I TTCGAA 2 cut(s) 243, 331
BpuMI CCSGG 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 428
Bsc4I CCNNNNNNNGG 1 cut(s) 912
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 4 cut(s) 135, 230, 493, 952
BseLI CCNNNNNNNGG 1 cut(s) 912
BseMII CTCAG 2 cut(s) 71, 615
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 918
BseXI GCAGC 3 cut(s) 62, 285, 577
BshFI GGCC 3 cut(s) 313, 469, 507
BshNI GGYRCC 1 cut(s) 742
BsiSI CCGG 1 cut(s) 428
BslFI GGGAC 1 cut(s) 682
BslI CCNNNNNNNGG 1 cut(s) 912
BsmAI GTCTC 2 cut(s) 76, 907
BsmFI GGGAC 1 cut(s) 682
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 3 cut(s) 313, 469, 507
Bsp119I TTCGAA 2 cut(s) 243, 331
Bsp1286I GDGCHC 1 cut(s) 918
Bsp143I GATC 7 cut(s) 35, 44, 54, 123, 559, 619, 1001
BspACI CCGC 2 cut(s) 139, 310
BspANI GGCC 3 cut(s) 313, 469, 507
BspCNI CTCAG 2 cut(s) 72, 616
BspHI TCATGA 2 cut(s) 321, 390
BspLI GGNNCC 2 cut(s) 670, 744
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 2 cut(s) 554, 614
BspT104I TTCGAA 2 cut(s) 243, 331
BspT107I GGYRCC 1 cut(s) 742
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 7 cut(s) 35, 44, 54, 123, 559, 619, 1001
Bst4CI ACNGT 3 cut(s) 238, 615, 721
BstAPI GCANNNNNTGC 1 cut(s) 207
BstBI TTCGAA 2 cut(s) 243, 331
BstDEI CTNAG 2 cut(s) 80, 624
BstF5I GGATG 4 cut(s) 135, 230, 493, 952
BstKTI GATC 7 cut(s) 38, 47, 57, 126, 562, 622, 1004
BstMAI GTCTC 2 cut(s) 76, 907
BstMBI GATC 7 cut(s) 35, 44, 54, 123, 559, 619, 1001
BstMWI GCNNNNNNNGC 3 cut(s) 207, 307, 1021
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 2 cut(s) 86, 591
BstSLI GKGCMC 1 cut(s) 918
BstV1I GCAGC 3 cut(s) 62, 285, 577
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 3 cut(s) 313, 469, 507
BtgZI GCGATG 1 cut(s) 996
BtsCI GGATG 4 cut(s) 135, 230, 493, 952
CciI TCATGA 2 cut(s) 321, 390
Cfr13I GGNCC 3 cut(s) 467, 505, 669
Csp6I GTAC 3 cut(s) 433, 611, 991
CviAII CATG 8 cut(s) 39, 284, 322, 391, 645, 765, 899, 1020
CviJI RGCY 9 cut(s) 153, 298, 313, 427, 469, 507, 845, 869, 1024
CviKI_1 RGCY 9 cut(s) 153, 298, 313, 427, 469, 507, 845, 869, 1024
CviQI GTAC 3 cut(s) 433, 611, 991
DdeI CTNAG 2 cut(s) 80, 624
DpnI GATC 7 cut(s) 37, 46, 56, 125, 561, 621, 1003
DpnII GATC 7 cut(s) 35, 44, 54, 123, 559, 619, 1001
DraI TTTAAA 1 cut(s) 637
DriI GACNNNNNGTC 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 311
Eam1105I GACNNNNNGTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 669
EcoO109I RGGNCCY 1 cut(s) 669
FaeI CATG 8 cut(s) 42, 287, 325, 394, 648, 768, 902, 1023
FaqI GGGAC 1 cut(s) 682
FatI CATG 8 cut(s) 38, 283, 321, 390, 644, 764, 898, 1019
Fnu4HI GCNGC 4 cut(s) 51, 299, 311, 591
FokI GGATG 4 cut(s) 122, 237, 500, 959
Fsp4HI GCNGC 4 cut(s) 51, 299, 311, 591
GluI GCNGC 4 cut(s) 51, 299, 311, 591
HaeIII GGCC 3 cut(s) 313, 469, 507
HapII CCGG 1 cut(s) 428
Hin1II CATG 8 cut(s) 42, 287, 325, 394, 648, 768, 902, 1023
HinfI GANTC 8 cut(s) 325, 361, 598, 628, 656, 713, 854, 895
HpaII CCGG 1 cut(s) 428
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 6 cut(s) 81, 168, 408, 778, 894, 907
Hpy188III TCNNGA 5 cut(s) 322, 391, 623, 835, 980
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 5 cut(s) 119, 375, 695, 905, 937
HpyCH4III ACNGT 3 cut(s) 238, 615, 721
HpyCH4V TGCA 8 cut(s) 33, 491, 572, 593, 662, 818, 864, 950
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 307, 1021
HpyF3I CTNAG 2 cut(s) 80, 624
Hsp92II CATG 8 cut(s) 42, 287, 325, 394, 648, 768, 902, 1023
Kzo9I GATC 7 cut(s) 35, 44, 54, 123, 559, 619, 1001
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 9 cut(s) 60, 114, 201, 441, 559, 565, 636, 651, 993
Lsp1109I GCAGC 3 cut(s) 62, 285, 577
LweI GCATC 2 cut(s) 478, 937
MalI GATC 7 cut(s) 37, 46, 56, 125, 561, 621, 1003
MboI GATC 7 cut(s) 35, 44, 54, 123, 559, 619, 1001
MboII GAAGA 7 cut(s) 104, 207, 257, 320, 569, 710, 819
MfeI CAATTG 1 cut(s) 871
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 918
MlyI GAGTC 2 cut(s) 370, 904
MnlI CCTC 5 cut(s) 17, 116, 312, 733, 835
MroXI GAANNNNTTC 2 cut(s) 8, 975
MseI TTAA 5 cut(s) 270, 473, 482, 636, 887
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 1 cut(s) 871
Mva1269I GAATGC 1 cut(s) 1015
MwoI GCNNNNNNNGC 3 cut(s) 207, 307, 1021
NciI CCSGG 1 cut(s) 429
NdeII GATC 7 cut(s) 35, 44, 54, 123, 559, 619, 1001
NlaIII CATG 8 cut(s) 42, 287, 325, 394, 648, 768, 902, 1023
NlaIV GGNNCC 2 cut(s) 670, 744
NspV TTCGAA 2 cut(s) 243, 331
PagI TCATGA 2 cut(s) 321, 390
PctI GAATGC 1 cut(s) 1015
PdmI GAANNNNTTC 2 cut(s) 8, 975
PfeI GAWTC 6 cut(s) 325, 598, 628, 656, 713, 854
PkrI GCNGC 4 cut(s) 52, 300, 312, 592
PleI GAGTC 2 cut(s) 369, 903
PpsI GAGTC 2 cut(s) 369, 903
PpuMI RGGWCCY 1 cut(s) 669
PshBI ATTAAT 1 cut(s) 473
PsiI TTATAA 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 669
PspN4I GGNNCC 2 cut(s) 670, 744
PspPI GGNCC 3 cut(s) 467, 505, 669
PspPPI RGGWCCY 1 cut(s) 669
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 3 cut(s) 434, 612, 992
RsaNI GTAC 3 cut(s) 433, 611, 991
SaqAI TTAA 5 cut(s) 270, 473, 482, 636, 887
SatI GCNGC 4 cut(s) 51, 299, 311, 591
Sau3AI GATC 7 cut(s) 35, 44, 54, 123, 559, 619, 1001
Sau96I GGNCC 3 cut(s) 467, 505, 669
ScaI AGTACT 1 cut(s) 612
SchI GAGTC 2 cut(s) 370, 904
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 918
SetI ASST 7 cut(s) 79, 155, 166, 300, 674, 744, 806
SfaNI GCATC 2 cut(s) 478, 937
SfcI CTRYAG 2 cut(s) 86, 591
SfuI TTCGAA 2 cut(s) 243, 331
SinI GGWCC 1 cut(s) 669
SsiI CCGC 2 cut(s) 139, 310
StyD4I CCNGG 1 cut(s) 427
TaaI ACNGT 3 cut(s) 238, 615, 721
TaqI TCGA 8 cut(s) 243, 331, 359, 377, 618, 738, 836, 921
TatI WGTACW 2 cut(s) 610, 990
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 6 cut(s) 325, 598, 628, 656, 713, 854
Tru1I TTAA 5 cut(s) 270, 473, 482, 636, 887
Tru9I TTAA 5 cut(s) 270, 473, 482, 636, 887
TseI GCWGC 3 cut(s) 50, 298, 590
TspDTI ATGAA 9 cut(s) 17, 251, 338, 620, 753, 819, 924, 956, 1008
TspGWI ACGGA 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 669
VspI ATTAAT 1 cut(s) 473
XapI RAATTY 1 cut(s) 787
XmnI GAANNNNTTC 2 cut(s) 8, 975
ZrmI AGTACT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.