Rh1CG346100
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012871
Physical Location & Seq
Reverse (-)
62343366 .. 62344958
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG346100.1

Sequence Viewer

Length: 822 bp
ATGAAGATATCAAGTGAAGGTACCAGTCAAGCTTCTAAAGCAAGTTTATCATCTTCTAGCCAGAGCAAGAAGGAACGTGGTGACGATGAGGAGGAGGATGAGAAGGTGGTGGATAAGGATAGCCAGCAGCAGCCCAGCAGCAAGAATGGTGTTAGCTCCAGTAGCAGCACCATCGAAGAGAACGAAAAGTCGAACGGTGCTTCAGGTGGATCTGTACGACAGTATGTGCGTTCCAAGACTTCAAGGCTTCGATGGACTCCTGATCTCCATCTTTGCTTTATTCATGCGGTTGAAAGATTAGGAGGGCAAGAGAGGGCAACACCAAAATTAGTTCTTCAATTGATGAATGTCAAGGGTCTCAGCATAGCTCATGTCAAGAGCCATCTTCAAATGTATAGGAGCAAGAAGATGGAAGACCCAAATCAAGTTCTCCCAGAGCAAGGCTTCTACATTGAAGGTGGAGATAATCATATATACAACCTTACTCAACTCTCCGTGCTACAAAGTTTCAACCACCAATGGCCTTCTTCAGGATTAAGGCAGTCATGGCAAGATCACAGTTGGTTGGACAACAGTATCGCCACTCGAAACACACTGAAAAGAAAGGCTCCGGATTCTTCAGATAATACTTCTAATTTGGATTTGAACTTATCACTGAAAGTTCCAGCAACAGAAGAAAAGGTACTGGGATTTGGTCTGTCTCTTTCTCTTTCTCCAGCTTCAGCGTCCTCGAAGCTCGGCTTGATGAAGAAGCTAGAAGGTAATGGTGGTCATGATAGGGAGCATGGGAGAAAGGCAAGTACTCTGGACCTCACTCTATGA

Protein Analysis

273

Amino Acids

30.05

Weight (kDa)

8.51

Isoelectric Point (pI)

58.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 82 - 133 1.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40260 AT2G40260
fragaria_vesca FvH4_7g24880
malus_domestica MD01G1156500.v1.1 MD07G1225200.v1.1
prunus_persica Prupe.2G253700_v2.0.a1
pyrus_communis pycom01g17330
rosa_chinensis RchiOBHm_Chr1g0370761
rosa_laevigata RLG00000027012
rosa_multiflora Rmu_sc0009474.1_g000002 Rmu_sc0009615.1_g000002
rosa_roxburghii Rroxscaffold_4G00286260
rosa_rugosa Rorug01G0359400
rosa_samantha Rh1AG368600 Rh1BG332200 Rh1CG346100 Rh1DG363600
rosa_wichuraiana Rw1G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 610
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 4 cut(s) 186, 513, 603, 705
AfaI GTAC 4 cut(s) 22, 216, 684, 802
AfiI CCNNNNNNNGG 2 cut(s) 440, 530
AgsI TTSAA 7 cut(s) 243, 293, 338, 389, 455, 511, 646
AluBI AGCT 6 cut(s) 32, 156, 368, 719, 736, 754
AluI AGCT 6 cut(s) 32, 156, 368, 719, 736, 754
Alw26I GTCTC 2 cut(s) 362, 705
AlwI GGATC 1 cut(s) 217
Aor13HI TCCGGA 1 cut(s) 610
AoxI GGCC 1 cut(s) 521
ApeKI GCWGC 4 cut(s) 127, 130, 138, 165
Asp718I GGTACC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 808
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 808
BaeI ACNNNNGTAYC 2 cut(s) 559, 592
BanI GGYRCC 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 666, 698
BbsI GAAGAC 1 cut(s) 420
BbvI GCAGC 4 cut(s) 139, 142, 150, 177
BccI CCATC 5 cut(s) 179, 246, 276, 390, 403
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BcoDI GTCTC 2 cut(s) 362, 705
BfaI CTAG 2 cut(s) 57, 755
BisI GCNGC 4 cut(s) 128, 131, 139, 166
BlsI GCNGC 4 cut(s) 129, 132, 140, 167
BmcAI AGTACT 1 cut(s) 802
Bme18I GGWCC 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 808
BmiI GGNNCC 2 cut(s) 22, 609
BmrI ACTGGG 1 cut(s) 695
BmuI ACTGGG 1 cut(s) 695
BpiI GAAGAC 1 cut(s) 420
BpmI CTGGAG 2 cut(s) 142, 699
BsaBI GATNNNNATC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 610
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 530
Bse1I ACTGG 3 cut(s) 24, 159, 690
Bse8I GATNNNNATC 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 610
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 440, 530
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 3 cut(s) 24, 159, 690
BseRI GAGGAG 2 cut(s) 104, 107
BseXI GCAGC 4 cut(s) 139, 142, 150, 177
BseYI CCCAGC 1 cut(s) 134
BshFI GGCC 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 440, 530
BsmAI GTCTC 2 cut(s) 362, 705
BsnI GGCC 1 cut(s) 523
Bso31I GGTCTC 1 cut(s) 362
Bsp13I TCCGGA 1 cut(s) 610
Bsp143I GATC 3 cut(s) 209, 262, 553
BspACI CCGC 1 cut(s) 287
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 1 cut(s) 372
BspEI TCCGGA 1 cut(s) 610
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 2 cut(s) 22, 609
BspPI GGATC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 362
BsrI ACTGG 3 cut(s) 24, 159, 690
BssMI GATC 3 cut(s) 209, 262, 553
Bst4CI ACNGT 4 cut(s) 197, 222, 560, 575
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 528
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 3 cut(s) 212, 265, 556
BstMAI GTCTC 2 cut(s) 362, 705
BstMBI GATC 3 cut(s) 209, 262, 553
BstMWI GCNNNNNNNGC 3 cut(s) 38, 162, 547
BstV1I GCAGC 4 cut(s) 139, 142, 150, 177
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 1 cut(s) 523
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 593, 653
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 772
Cfr13I GGNCC 1 cut(s) 808
CseI GACGC 1 cut(s) 714
Csp6I GTAC 4 cut(s) 21, 215, 683, 801
CviAII CATG 5 cut(s) 284, 371, 546, 773, 785
CviQI GTAC 4 cut(s) 21, 215, 683, 801
DdeI CTNAG 1 cut(s) 359
DpnI GATC 3 cut(s) 211, 264, 555
DpnII GATC 3 cut(s) 209, 262, 553
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 808
Eco57I CTGAAG 4 cut(s) 186, 513, 603, 705
EcoNI CCTNNNNNAGG 1 cut(s) 528
EcoRV GATATC 1 cut(s) 9
FaeI CATG 5 cut(s) 287, 374, 549, 776, 788
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FatI CATG 5 cut(s) 283, 370, 545, 772, 784
Fnu4HI GCNGC 4 cut(s) 128, 131, 139, 166
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 4 cut(s) 128, 131, 139, 166
FspBI CTAG 2 cut(s) 57, 755
GluI GCNGC 4 cut(s) 128, 131, 139, 166
GsaI CCCAGC 1 cut(s) 138
GsuI CTGGAG 2 cut(s) 142, 699
HaeIII GGCC 1 cut(s) 523
HapII CCGG 1 cut(s) 611
HgaI GACGC 1 cut(s) 714
Hin1II CATG 5 cut(s) 287, 374, 549, 776, 788
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 2 cut(s) 256, 614
HpaII CCGG 1 cut(s) 611
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 622
Hpy188III TCNNGA 6 cut(s) 260, 376, 531, 611, 773, 806
HpyAV CCTTC 6 cut(s) 11, 64, 97, 449, 534, 752
HpyCH4III ACNGT 4 cut(s) 197, 222, 560, 575
HpyCH4IV ACGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 162, 547
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 5 cut(s) 287, 374, 549, 776, 788
Kpn2I TCCGGA 1 cut(s) 610
KpnI GGTACC 1 cut(s) 24
Kzo9I GATC 3 cut(s) 209, 262, 553
LmnI GCTCC 4 cut(s) 161, 399, 613, 781
Lsp1109I GCAGC 4 cut(s) 139, 142, 150, 177
MaeI CTAG 2 cut(s) 57, 755
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 80
MalI GATC 3 cut(s) 211, 264, 555
MboI GATC 3 cut(s) 209, 262, 553
MfeI CAATTG 1 cut(s) 338
MflI RGATCY 1 cut(s) 209
MluCI AATT 3 cut(s) 326, 338, 634
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 7 cut(s) 82, 85, 88, 296, 306, 739, 821
MroI TCCGGA 1 cut(s) 610
MseI TTAA 1 cut(s) 536
MspI CCGG 1 cut(s) 611
MunI CAATTG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 38, 162, 547
NdeII GATC 3 cut(s) 209, 262, 553
NlaIII CATG 5 cut(s) 287, 374, 549, 776, 788
NlaIV GGNNCC 2 cut(s) 22, 609
NmeAIII GCCGAG 1 cut(s) 717
NmuCI GTSAC 1 cut(s) 80
PagI TCATGA 1 cut(s) 772
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 1 cut(s) 614
PkrI GCNGC 4 cut(s) 129, 132, 140, 167
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 22, 609
PspPI GGNCC 1 cut(s) 808
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 4 cut(s) 22, 216, 684, 802
RsaNI GTAC 4 cut(s) 21, 215, 683, 801
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 4 cut(s) 128, 131, 139, 166
Sau3AI GATC 3 cut(s) 209, 262, 553
Sau96I GGNCC 1 cut(s) 808
ScaI AGTACT 1 cut(s) 802
SchI GAGTC 1 cut(s) 250
SinI GGWCC 1 cut(s) 808
Sse9I AATT 3 cut(s) 326, 338, 634
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 57, 755
TaaI ACNGT 4 cut(s) 197, 222, 560, 575
TaiI ACGT 1 cut(s) 79
TaqI TCGA 5 cut(s) 174, 191, 250, 586, 731
TasI AATT 3 cut(s) 326, 338, 634
TatI WGTACW 1 cut(s) 800
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 2 cut(s) 600, 660
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 4 cut(s) 127, 130, 138, 165
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 17, 272, 359, 761
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 2 cut(s) 600, 660
VpaK11BI GGWCC 1 cut(s) 808
XagI CCTNNNNNAGG 1 cut(s) 528
XspI CTAG 2 cut(s) 57, 755
ZrmI AGTACT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.