AT2G40935

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005474
Physical Location & Seq
Forward (+)
17082745 .. 17084376
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40935.3

Sequence Viewer

Length: 573 bp
ATGAAAGAGAAGAAGGGTCATTACGTGCCACCATCTTATATTCCATTAACACAGTCAGATGCTGATACTGAAGTAGAGACCACTACTCCAAATCTGGAAATTGCTGTTTCTGAAAGCACAAAAGATGATCCGAGACAATGGTCATCTGGTATATGCGCTTGCTTCGACGATATGCAGAGCTGTTGTGTAGGTTTGTTCTGTCCTTGTTATATCTTTGGCAAAAACGCAGAGCTTCTGGGGTCTGGAACATTTGCAGGACCCTGCTTAACCCATTGCATCTCCTGGGCTTTGGTCAATACCATTTGCTGCTTTGCAACTAATGGCGCATTGCTCGGTCTACCGGGATGCTTTGTGTCATGTTATGCTTGCGGGTACCGCAAATCATTAAGAGCCAAGTACAATTTACAGGAGGCTCCATGTGGGGATTTTGTAACACACTTCTTCTGTCACTTGTGTGCCATTTGCCAAGAATACAGAGAGATTCGAGAACAAAGCAGTGGTTCATATCCTCTTGACATGAAGATGGCTATCACCAATGCCCCCTTGGCTCAAACCATGGAATCAGCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

190

Amino Acids

20.8

Weight (kDa)

5.14

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 47 - 149 4.6e-23 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AccI GTMKAC 1 cut(s) 337
AciI CCGC 2 cut(s) 369, 376
AclWI GGATC 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 2 cut(s) 374, 398
AjnI CCWGG 1 cut(s) 281
AleI CACNNNNGTG 1 cut(s) 453
AluBI AGCT 3 cut(s) 180, 232, 566
AluI AGCT 3 cut(s) 180, 232, 566
Alw26I GTCTC 2 cut(s) 71, 127
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 306
Asp718I GGTACC 1 cut(s) 372
AspLEI GCGC 2 cut(s) 158, 326
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 523
AvaII GGWCC 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BanI GGYRCC 1 cut(s) 372
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 293
BccI CCATC 2 cut(s) 40, 517
BciT130I CCWGG 1 cut(s) 283
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 71, 127
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 283, 342
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 3 cut(s) 259, 374, 414
BmrFI CCNGG 2 cut(s) 283, 342
BmsI GCATC 3 cut(s) 49, 285, 335
BoxI GACNNNNGTC 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 3 cut(s) 282, 543, 555
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bse3DI GCAATG 2 cut(s) 271, 326
Bse8I GATNNNNATC 1 cut(s) 527
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 3 cut(s) 282, 543, 555
BseGI GGATG 1 cut(s) 350
BseJI GATNNNNATC 1 cut(s) 527
BseMI GCAATG 2 cut(s) 271, 326
BseXI GCAGC 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 372
BsiSI CCGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 71, 127
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 127
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 2 cut(s) 369, 376
BspLI GGNNCC 3 cut(s) 259, 374, 414
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 271, 326
BssECI CCNNGG 3 cut(s) 282, 543, 555
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 2 cut(s) 543, 555
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 160, 367
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 350
BstHHI GCGC 2 cut(s) 158, 326
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 2 cut(s) 71, 127
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 375, 545
BstNI CCWGG 1 cut(s) 283
BstPAI GACNNNNGTC 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 281, 340
BstV1I GCAGC 1 cut(s) 293
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 1 cut(s) 350
BtsI GCAGTG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 160, 367
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 2 cut(s) 158, 326
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 373, 397
CviAII CATG 4 cut(s) 357, 417, 517, 556
CviJI RGCY 8 cut(s) 180, 232, 287, 392, 413, 527, 548, 566
CviKI_1 RGCY 8 cut(s) 180, 232, 287, 392, 413, 527, 548, 566
CviQI GTAC 2 cut(s) 373, 397
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco130I CCWWGG 2 cut(s) 543, 555
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 2 cut(s) 543, 555
ErhI CCWWGG 2 cut(s) 543, 555
FaeI CATG 4 cut(s) 360, 420, 520, 559
FatI CATG 4 cut(s) 356, 416, 516, 555
FauI CCCGC 1 cut(s) 362
FblI GTMKAC 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 307
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 307
GlaI GCGC 2 cut(s) 157, 325
GluI GCNGC 1 cut(s) 307
HapII CCGG 1 cut(s) 341
HhaI GCGC 2 cut(s) 158, 326
Hin1II CATG 4 cut(s) 360, 420, 520, 559
Hin6I GCGC 2 cut(s) 156, 324
HinP1I GCGC 2 cut(s) 156, 324
HinfI GANTC 2 cut(s) 481, 560
HpaII CCGG 1 cut(s) 341
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 3 cut(s) 58, 112, 132
Hpy188III TCNNGA 4 cut(s) 95, 243, 485, 512
Hpy8I GTNNAC 1 cut(s) 338
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 4 cut(s) 175, 254, 276, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 375, 545
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 4 cut(s) 360, 420, 520, 559
HspAI GCGC 2 cut(s) 156, 324
KpnI GGTACC 1 cut(s) 376
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 3 cut(s) 49, 285, 335
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 430, 446
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 3 cut(s) 22, 433, 532
MluCI AATT 2 cut(s) 99, 400
MnlI CCTC 2 cut(s) 403, 519
MseI TTAA 3 cut(s) 47, 266, 386
MslI CAYNNNNRTG 2 cut(s) 453, 521
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 2 cut(s) 283, 342
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 2 cut(s) 375, 545
NciI CCSGG 1 cut(s) 342
NcoI CCATGG 1 cut(s) 555
NdeII GATC 1 cut(s) 127
NlaIII CATG 4 cut(s) 360, 420, 520, 559
NlaIV GGNNCC 3 cut(s) 259, 374, 414
NmuCI GTSAC 1 cut(s) 446
OliI CACNNNNGTG 1 cut(s) 453
PfeI GAWTC 2 cut(s) 481, 560
PkrI GCNGC 1 cut(s) 308
Ppu21I YACGTR 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 3 cut(s) 259, 374, 414
PspPI GGNCC 1 cut(s) 257
PspPPI RGGWCCY 1 cut(s) 257
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 374, 398
RsaNI GTAC 2 cut(s) 373, 397
RseI CAYNNNNRTG 2 cut(s) 453, 521
SaqAI TTAA 3 cut(s) 47, 266, 386
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 283, 342
SetI ASST 5 cut(s) 27, 182, 193, 234, 568
SfaNI GCATC 3 cut(s) 49, 285, 335
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 453, 521
Sse9I AATT 2 cut(s) 99, 400
SsiI CCGC 2 cut(s) 369, 376
StyD4I CCNGG 2 cut(s) 281, 340
StyI CCWWGG 2 cut(s) 543, 555
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 165, 484
TaqII GACCGA 1 cut(s) 323
TasI AATT 2 cut(s) 99, 400
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 2 cut(s) 481, 560
Tru1I TTAA 3 cut(s) 47, 266, 386
Tru9I TTAA 3 cut(s) 47, 266, 386
TscAI CASTG 1 cut(s) 502
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 3 cut(s) 17, 492, 533
TspRI CASTG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.